| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 2,466,923 | (C)8→9 | intergenic (+242/‑123) | fadL → / → CXP41_RS12955 | long‑chain fatty acid transporter FadL/protein YfdF |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 2,466,915 | 1 | . | C | 93.8% | 876.3 / 51.1 | 279 | intergenic (+234/‑131) | fadL/CXP41_RS12955 | long‑chain fatty acid transporter FadL/protein YfdF |
| Reads supporting (aligned to +/- strand): ref base . (2/15); new base C (37/222); total (39/240) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.39e-01 | |||||||||||
Only 100 of 343 total aligned reads displayed.
TTTTGCAAACAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTGTAACAAATCAATCAAAATGGAATAAAATCATGCT > NZ_CP025268/2466776‑2467050 | ttttGCAAACAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACt > 2:1757650/1‑140 (MQ=255) ttGCAAACAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑‑c‑c < 2:4949930/140‑1 (MQ=255) tGCAAACAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑‑c‑cc < 1:3023601/140‑1 (MQ=255) tGCAAACAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑‑c‑cc < 1:10444580/140‑1 (MQ=255) tGCAAACAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑‑c‑cc < 1:6989981/140‑1 (MQ=255) gCAAACAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑‑c‑cc‑c < 2:443486/140‑1 (MQ=255) cAAACAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑‑c‑cc‑c‑c < 1:270410/140‑1 (MQ=255) cAAACAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑‑c‑cc‑c‑c > 1:11596680/1‑140 (MQ=255) caCAGCCTGTTGGCAGCTTGCCCTTTCAACTCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑‑c‑cc‑c‑c‑cc < 2:6444952/139‑1 (MQ=255) aaCAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGACAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑‑c‑cc‑c‑c‑cc < 2:5266119/140‑1 (MQ=255) aaCAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑‑c‑cc‑c‑c‑cc < 1:1476668/140‑1 (MQ=255) aaCAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑‑c‑cc‑c‑c‑cc < 1:213517/140‑1 (MQ=255) aaCAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑‑c‑cc‑c‑c‑cc < 1:3838125/140‑1 (MQ=255) aaCAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑‑c‑cc‑c‑c‑cc < 2:4622547/140‑1 (MQ=255) aaCAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑‑c‑cc‑c‑c‑cc < 1:4627876/140‑1 (MQ=255) aaCAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑‑c‑cc‑c‑c‑cc < 2:906498/140‑1 (MQ=255) aaCAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑‑c‑cc‑c‑c‑cc < 1:9792126/140‑1 (MQ=255) aaCAGCCTGGTGGCAGCTTGCCCTTTCAAATCAATAAGCGGGATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑‑c‑cc‑c‑c‑cc < 1:5064/140‑1 (MQ=255) aCAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑‑c‑cc‑c‑c‑ccc < 1:10282498/140‑1 (MQ=255) cAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑‑c‑cc‑c‑c‑cccc < 2:10200103/140‑2 (MQ=255) aGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑‑c‑cc‑c‑c‑cccct < 2:1055939/140‑3 (MQ=255) aGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑‑c‑cc‑c‑c‑cccct > 2:840750/1‑138 (MQ=255) ccTTTTGGCAGCTTGCCCTTACAAATAAATACGCGTTATCCACAGAAAAACCTTATGGGAATGGCATATTTTCTGGCGTTCTGCTCGTCCTTCACAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑‑c‑cc‑c‑c‑cccctgg < 1:4548416/140‑5 (MQ=255) ccTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATGTCCAGGATACT‑‑C‑CC‑C‑C‑CCCCggg > 1:7599108/1‑139 (MQ=255) gTTGGCTGCTAGCCCTTTCAAATCACTCAGCGGTATCCACAGCCACACCTGAAGGGAAAGGCAAATATTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTa < 2:6796504/140‑1 (MQ=255) ttGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTAt < 1:8564447/140‑1 (MQ=255) tGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTAtt < 1:10940582/140‑1 (MQ=255) ggCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATtg < 2:9358406/140‑1 (MQ=255) ggCAGCTAGCCCTTTCAAATCAATAAGCGGTATCCACAGACACACCTGCAGGGAAAGGCATAGTGTCAGGCGTTCTGCTCGTCCTTCTCACAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATtg < 2:2015863/140‑1 (MQ=255) gCAGCTTGCCCTTTCAAATCAATCAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTACAGGCGGTCTGCTCGTCCTTCTCAAAGAGATTACGTTTCTGCATTTCCAGGATCCT‑‑C‑CC‑C‑C‑CCCTGGCTATtgtg < 2:7028049/140‑1 (MQ=255) cAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGTCTATtgtg > 2:1404017/1‑140 (MQ=255) cAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTagggtg > 1:10273349/1‑135 (MQ=255) cAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATtgtg < 1:6505607/140‑1 (MQ=255) cAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATtgtg < 1:7221425/140‑1 (MQ=255) cAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATtgtg < 1:9301917/140‑1 (MQ=255) cAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATtgtg < 1:962710/140‑1 (MQ=255) cAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATtgtg < 2:2252951/140‑1 (MQ=255) cAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATtgtg < 2:6058332/140‑1 (MQ=255) gCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTgcg < 1:5460043/140‑1 (MQ=255) gCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTgcg < 1:7687908/140‑1 (MQ=255) gCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTgcg < 2:8362575/140‑1 (MQ=255) gCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGTGAAAGGCATATTTTCAGTCGTTCTGCTCGTACTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGTTACT‑‑C‑CC‑C‑CACCCTGGCTATTGTGCGCTCa < 2:3423039/140‑1 (MQ=255) cccTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCAt < 1:5947859/140‑1 (MQ=255) ttCAAATCAATAACCGGACTCCACAGACAAACCTGACGGGAAAGGCATATTTTCAGGCGTACTGCTCGTCCTTCTCAAAGAGATTACTTTTCTGCATTTCCCGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCAAacac < 2:725992/140‑1 (MQ=255) aacAAATCACTCACCGGTATCCACAGACAAACCTGAAGGGAAAGGCATAATTTCAGGCGTTCTGCTCGTCCATCTCAAACAGATTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATGGTGCTCTCATacac < 2:7965687/138‑1 (MQ=255) aTCAATAAGAGGTATCCACAGACAAACCTGAAGTGAAAGGCATATTTTCAGGCGTTCTGCTCGACCTTCTCAAAGAGTTTAATATTCTGCATTTCCTGGATAATC‑C‑CC‑C‑C‑CCCTGGATATTGTGCGCTCATACACTCaaa < 2:10831912/140‑1 (MQ=255) aTAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCaaa > 2:1900920/1‑136 (MQ=255) gCGGTATCCACAGACAAACCTGAAGGGTAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGAt < 1:3607224/140‑1 (MQ=255) gCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGAt < 1:7468187/140‑1 (MQ=255) gCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGAt < 1:10162237/140‑1 (MQ=255) gCGGTATACACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTATCAAAGATTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGAt < 2:2395021/140‑1 (MQ=255) tATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGt > 2:1663391/1‑140 (MQ=255) aTCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGtt < 1:1545317/140‑1 (MQ=255) aTCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGtt < 1:807174/140‑1 (MQ=255) aTCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGtt < 1:2275190/140‑1 (MQ=255) aTCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGtt < 2:5688508/140‑1 (MQ=255) ccAAAGACAAACCTGAAGGGAAAGGAATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCt < 2:7425395/140‑1 (MQ=255) gACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGGTACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACt < 1:1378486/116‑1 (MQ=255) aCCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGa > 1:8694405/1‑140 (MQ=255) ccaccaGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTACTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAg < 2:4008863/135‑1 (MQ=255) ccTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAg < 1:3565845/140‑1 (MQ=255) ccTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAg < 2:1354238/140‑1 (MQ=255) ccTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAg < 1:3167597/140‑1 (MQ=255) ccTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAg < 1:11214857/140‑1 (MQ=255) acTGAAGTGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCAGTTCAAGTATACTC‑C‑CC‑C‑C‑CCCTGTCTATTGTGCGCTCTTACACTCAAATTAAAGATAGGTTCTAAATAATTGAg < 2:7888229/139‑1 (MQ=255) tGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCg < 1:331868/140‑1 (MQ=255) tGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCGCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCg < 1:9090770/140‑1 (MQ=255) aaaGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTg < 2:11069007/140‑1 (MQ=255) cacgCAAATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGACTTTACTTTACTGCATTTCCAGGATACT‑‑CACC‑C‑C‑CCCTGGCTTTTGTGCGCTCATACACTCATATTAAAGATTGGTTCTAAATAAATGAGCGTTTTTTGa < 2:11394553/137‑1 (MQ=255) caGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGa < 2:3795875/139‑1 (MQ=255) aacgCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGAATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGa < 2:9868789/137‑1 (MQ=255) aaGGCATATTTTCTGGCGTTCTGCTCGTACATCTCAAAGTGTTTACTTTTCTGCATTTCCAGTATACT‑‑C‑CC‑CAC‑CCTTTTCTAGTGTGCGCTCATACACTAAAATTAAATTTATGTTCTTCATAAATTAGAGTTTTTTGa < 2:11537023/140‑1 (MQ=255) aaGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGa < 1:3742801/140‑1 (MQ=255) aaGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGa < 1:6616329/140‑1 (MQ=255) aaGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGa < 1:6837226/140‑1 (MQ=255) aaGGCATATTTTCAGGCGTTCTGCTCGTCCTTATCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑‑C‑CCAC‑C‑CCCTGGCTATTGTGCGCTCATACCCTCACATTAAAGATAGGTTCTAAATAAATGAGCGATTTTTGa < 2:1005055/140‑1 (MQ=255) aGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCC‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGa < 1:3396966/140‑1 (MQ=255) ggCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATa < 1:253773/140‑1 (MQ=255) ggCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATa < 1:8928126/140‑1 (MQ=255) tatTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCt < 1:4257668/140‑1 (MQ=255) atTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTa < 1:2046938/140‑1 (MQ=255) atTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTa < 1:1064230/140‑1 (MQ=255) atTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTa < 1:9370933/140‑1 (MQ=255) atTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTa < 1:8405879/140‑1 (MQ=255) atTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTa < 1:5598444/140‑1 (MQ=255) cAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCa < 1:3447465/140‑1 (MQ=255) cAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCa < 1:1757650/140‑1 (MQ=255) cAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCa < 1:5221004/140‑1 (MQ=255) aGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCAt < 2:5930181/140‑1 (MQ=255) ggCGTTCGGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATATCCtt < 2:307651/140‑1 (MQ=255) cGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAg < 2:7783265/140‑1 (MQ=255) tCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTa < 1:5732337/140‑1 (MQ=255) tCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTa < 1:4070508/140‑1 (MQ=255) cTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGAt > 2:4153453/1‑92 (MQ=255) cTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGAt < 1:4153454/92‑1 (MQ=255) cTGCTCGTCCTTCTCAAAGAGTCTACTTTTCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGAt > 2:8941140/1‑92 (MQ=255) gagTTTACTTTTCTGCATTTCCAGGATACTCCC‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTGTAACaaa < 1:1703728/140‑1 (MQ=255) tttCTGCATTTCCAGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGATCATACACTCAAATTAAAGATAGTTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTGTAACAAATCAATCaaaa < 1:11486723/140‑1 (MQ=255) aTTTCCAGGATACTA‑C‑CC‑C‑C‑CCCTGGCTAGTGTGCGATCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATTTTTGTAACAAATCAATCAAAATGGAATa < 2:209451/140‑1 (MQ=255) aGGATACTC‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTGTAACAAATCAATCAAAATGGAATAAAATCa > 2:4669669/1‑140 (MQ=255) | TTTTGCAAACAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑‑C‑CC‑C‑C‑CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTGTAACAAATCAATCAAAATGGAATAAAATCATGCT > NZ_CP025268/2466776‑2467050 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |