| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 3,509,139 | +C | pseudogene (137/878 nt) | php ← | phosphotriesterase‑related protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 3,509,136 | 1 | . | C | 96.5% | 2786.0 / 84.0 | 830 | pseudogene (140/878 nt) | php | phosphotriesterase‑related protein |
| Reads supporting (aligned to +/- strand): ref base . (15/14); new base C (421/376); total (438/392) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 906 total aligned reads displayed.
CACATGTTCCGGGAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACG‑CCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTCGGATCAAAA > NZ_CP025268/3508998‑3509270 | cacaTGTTCCGGGAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTacgcacg‑c > 1:9140101/1‑140 (MQ=255) aTGTTCCGGGAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACG‑cccc < 2:7331870/140‑2 (MQ=255) gTTCCGGGAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACG‑CCC‑cgg > 2:9697111/1‑140 (MQ=255) gTTCCGGGAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACG‑CCC‑cgg < 2:9433463/140‑1 (MQ=255) gTTCCGGGAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACG‑CCC‑cgg < 1:8553899/140‑1 (MQ=255) gTTCCGGGAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACG‑CCC‑cgg < 2:4553031/140‑1 (MQ=255) ttCCGGGAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACG‑CCC‑cggg < 2:4398819/140‑2 (MQ=255) tCCGGGAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACG‑CCC‑cgggt < 1:2862891/140‑3 (MQ=255) ggggAAAATCGCGTCGTGGGAATAACCGGTACCGGCCACCACGTTGATCCCCGTCTCGCGCATTCCAGCAAGCATCTATTGCGCATTGCGCCCCTTGTAACGGGTGGGCTTGTCAATCTCATTCCGCACG‑CCC‑cggggcg > 2:1233494/2‑136 (MQ=255) cGGGAAAAACGCGTCCTGGTAATAACCGGTAAAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGGCATCTCAATCCCATTACGCACGCCCC‑GGGtca > 2:1510722/1‑140 (MQ=255) gggAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGtcat > 2:7134359/1‑140 (MQ=255) gggAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGtcat > 2:3883352/1‑140 (MQ=255) gggAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACG‑CCC‑cggg < 2:4986283/136‑2 (MQ=255) aaaaCGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAgg < 1:8694398/140‑1 (MQ=255) aCGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCg > 1:9960423/1‑140 (MQ=255) cgTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTc < 2:3407622/140‑1 (MQ=255) cTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCAtct < 1:2676843/140‑1 (MQ=255) taataaCCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTg < 1:4561458/140‑1 (MQ=255) aCCGGTACGGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCATGGCaaa > 2:5314668/1‑140 (MQ=255) aCCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCaaa < 2:2519657/140‑1 (MQ=255) aCCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCaaa > 2:11285115/1‑140 (MQ=255) aCCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCaaa < 2:3650672/140‑1 (MQ=255) aCCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCaaa < 2:3528148/140‑1 (MQ=255) aCCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGACGTTCATCTCCTGGCaaa < 2:8825404/140‑1 (MQ=255) cGGTACAGGCCCCCACGTTGATCCCCGTCTCGCGCATAACATCCAGAAGACATTGCGCATTTCGCCCCCTGTAACGGTTTTTCATCTCAATCACATTACGCACGACCA‑GGGTCATCAGGTCGTTCCTCTCCGGGCAAATg < 2:7934190/140‑1 (MQ=255) cGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATg < 2:7754943/140‑1 (MQ=255) cGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATg < 1:7543327/140‑1 (MQ=255) tACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACCTCAAGCATAAATTGCGCATTGCGCCCCATGTATCGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAAc < 2:10827506/140‑1 (MQ=255) tACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCACTCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAAc < 1:5582098/140‑1 (MQ=255) tACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAAc > 1:10343792/1‑140 (MQ=255) tACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAAc < 1:7665269/140‑1 (MQ=255) tACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAAc > 1:243417/1‑140 (MQ=255) tACAGGCCACCACGTTGATCCCCGACTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAAc < 2:2886220/140‑1 (MQ=255) ggCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCAt > 1:589362/1‑140 (MQ=255) ggCCACCACGTTGATCCCAGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTAGTTCATCTCCTGGCAAATGAACGctt > 1:5312730/1‑138 (MQ=255) gCCACCCCGATGAGCCCCGTCTCGCGCAGTACATCACGCATAAATGGCGCATTGCGCCCCCTGTAACGGTTGGTCATCTCAATCACTGTTCGCACGACCC‑GGGTCATGTGGTCGTTCATCTCCGGGCAACTGAACGCATa < 2:10675088/140‑1 (MQ=255) gCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATa < 2:2629282/140‑1 (MQ=255) gCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATa > 2:7604500/1‑140 (MQ=255) ccaccaCGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATAc < 2:1916121/140‑1 (MQ=255) caccacGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACt > 1:1536858/1‑140 (MQ=255) caccacGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACt > 2:6562704/1‑140 (MQ=255) cacGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGAt > 1:8229372/1‑140 (MQ=255) cacGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGAt > 1:7238864/1‑140 (MQ=255) cacGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGAt > 2:6083018/1‑140 (MQ=255) cacGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGAt < 1:7943111/140‑1 (MQ=255) gTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCaa > 1:10750748/1‑140 (MQ=255) ttGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAg < 2:6852911/140‑1 (MQ=255) tGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAgg > 2:11096091/1‑140 (MQ=255) aTCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAggcg > 1:11373745/1‑140 (MQ=255) tCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAggcgg < 1:4279509/140‑1 (MQ=255) ccccGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGGAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAggcggc < 2:2273431/140‑1 (MQ=255) cccGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCaaa < 2:10299754/115‑1 (MQ=255) ctcGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCa > 2:5086227/1‑140 (MQ=255) gcgcATTACCTCAAGCAGAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCACTCACCTTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACgt < 2:4817819/140‑1 (MQ=255) gcgcATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACgt < 2:9097104/140‑1 (MQ=255) cgcATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACgtt > 1:1404836/1‑140 (MQ=255) tACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAGGGCGGCAGTCCACGTTGtttt < 2:3061068/140‑1 (MQ=255) tACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGtttt > 1:10028383/1‑140 (MQ=255) tACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGtttt < 2:2101508/140‑1 (MQ=255) tACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGtttt > 1:8064188/1‑140 (MQ=255) tACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGtttt < 2:1015815/140‑1 (MQ=255) aTAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGga > 1:665024/1‑140 (MQ=255) aTAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGga > 2:5573042/1‑140 (MQ=255) aTAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGga > 1:4931253/1‑140 (MQ=255) aaaTTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGTTCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGgaga < 2:5443273/140‑1 (MQ=255) aaaTTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGgaga > 1:3439111/1‑140 (MQ=255) aaaTTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGgaga < 1:8143136/140‑1 (MQ=255) aaaTTGCGAATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GTGTCATCAGTTCGTTCATCTCCTGGAAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGgaga < 2:9521578/140‑1 (MQ=255) aaaGTGCGCATTGCGCCCCATCTAACGGTTGGTCATCTCCATCACATTACGCACGCCCC‑GGGTCATCAGGGCGTTCCACTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGgaga < 2:8285117/140‑1 (MQ=255) attgcgcattgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGgagaga > 1:3259482/1‑140 (MQ=255) ttgcgcattgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGAt < 1:976366/140‑1 (MQ=255) ttgcgcattgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGAt < 1:9600705/140‑1 (MQ=255) cgcattgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCaa > 1:356199/1‑140 (MQ=255) cgcattgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCaa > 2:6694270/1‑140 (MQ=255) gcattgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAat > 2:11392047/1‑140 (MQ=255) gcattgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAat > 2:4229941/1‑140 (MQ=255) cattgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATNAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAata > 1:6311560/1‑140 (MQ=255) cgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAg < 1:9360780/140‑1 (MQ=255) cgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAg > 1:1656961/1‑140 (MQ=255) cgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAg < 1:5725918/140‑1 (MQ=255) cgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAg < 1:1118484/140‑1 (MQ=255) cGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGc > 2:589263/1‑140 (MQ=255) ggTTGGTCATCTCACTCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCg < 1:198123/140‑1 (MQ=255) ggTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCg < 1:1793983/140‑1 (MQ=255) gTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGCTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGa < 2:6287928/140‑1 (MQ=255) ttGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAg > 2:1423288/1‑140 (MQ=255) ttGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAg > 1:4772259/1‑140 (MQ=255) ggTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAggg > 1:6034795/1‑140 (MQ=255) gTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGgt > 2:1757339/1‑140 (MQ=255) tCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGgtg < 1:11001823/140‑1 (MQ=255) aTCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGt < 1:512484/140‑1 (MQ=255) aTCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGt < 2:8612299/140‑1 (MQ=255) aTCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGt < 1:8852024/140‑1 (MQ=255) aTTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTCGGAt > 1:3905698/1‑140 (MQ=255) tACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTCGGATCa > 1:2161102/1‑140 (MQ=255) tACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTCGGATCa > 1:6823451/1‑140 (MQ=255) acgcacgcCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTCGGATCaa < 1:699422/140‑1 (MQ=255) acgcacgcCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTCGGATCaa < 1:11527548/140‑1 (MQ=255) acgcacg‑cCCAGTGTCATCAGGTAGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTCGGATCaa < 1:4053669/140‑1 (MQ=255) cgcacgcCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTCGGAGCaaa > 2:5694391/1‑140 (MQ=255) | CACATGTTCCGGGAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACG‑CCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTCGGATCAAAA > NZ_CP025268/3508998‑3509270 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |