Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0252681,292,9820AG49.1% 34.4 / inf 309noncoding (55/132 nt)CXP41_RS06835RtT sRNA
Reads supporting (aligned to +/- strand):  ref base A (37/111);  new base G (77/66);  total (120/189)
Fisher's exact test for biased strand distribution p-value = 6.86e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.28e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 312 total aligned reads displayed.

CCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTG  >  NZ_CP025268/1292843‑1293112
                                                                                                                                           |                                                                                                                                  
cccGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGa                                                                                                                                    <  1:4249953/140‑1 (MQ=255)
    cttGGGCATAATATTTTATTGCGGATTCGTTTGAGAATTCCTGTGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCt                                                                                                                                <  1:7436565/138‑1 (MQ=14)
    cttGGGCAGAATATTTGATTTCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCt                                                                                                                                <  2:6055125/138‑1 (MQ=255)
    cttGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCTCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGGGGCATAGCGCTCTCGCTCAcccg                                                                                                                                >  1:2369167/3‑137 (MQ=14)
    cttGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTAGCCCTTCGGGTCGTTGCCTGAGGCAAAGCTCTCTCTCTGACGca                                                                                                                                >  1:9863778/3‑139 (MQ=14)
     ttGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATACCGGGGCTTTTGAAAGTGATGGTGGTGGTGGAAGGATTACACAGCGCTGCGCGCTACGCCCTTCGGGTCGTTTCCAGCGGCAACGCACACTCGCAGaagaac                                                                                                                               >  2:591215/2‑135 (MQ=14)
      tGGGCTGAATTTTTGATTGGGGATTCGTTTGAGAATTCCGGGGATTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCg                                                                                                                              <  2:885547/140‑1 (MQ=14)
       gggCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCCTCAGAGCTGCGCCCTTCGCCCATCTGTTCGTTGCATGAGGCAACGCTCTCTCTCTCACGCTAGa                                                                                                                             >  2:10401694/1‑140 (MQ=14)
        ggCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAg                                                                                                                            >  2:1740229/1‑140 (MQ=255)
        ggCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCGGACGCGCGAg                                                                                                                            >  1:3569168/1‑140 (MQ=255)
               tatTTGATTTCGGATTCGTTTGAGTATTCCGGGTCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAAcc                                                                                                                     <  2:4268858/140‑1 (MQ=255)
               tatTTGATTGCGGATTCGTTTGAGTATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAAcc                                                                                                                     <  1:8222133/140‑1 (MQ=255)
               tatTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAAcc                                                                                                                     <  2:1869753/140‑1 (MQ=255)
               tatTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAAcc                                                                                                                     <  1:4110700/140‑1 (MQ=255)
                  ttGATTGCGGAGTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTa                                                                                                                  <  1:8703600/140‑1 (MQ=255)
                    gATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCATCGGGGCGTTTCCTGTGGCAACGTGCTCTCGCTTACGCACGAAACGAACCGTagt                                                                                                                >  1:11211983/1‑138 (MQ=14)
                       tGCGGATTCGTTTGAGAATTNCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCCGCAAAGNACGCTCGNGCACCCACCAGCCGAACCATATTCGa                                                                                                             >  1:6240208/1‑140 (MQ=14)
                       tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTTCCTGCGGCAACGCGCTCTCGCTGACGCTCGAGCCGAACCATagtaga                                                                                                             >  1:10791859/1‑135 (MQ=14)
                       tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGGCGAACCTTAGTCGa                                                                                                             >  2:5714579/1‑140 (MQ=255)
                       tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                             <  1:3883575/140‑1 (MQ=255)
                       tGCGGATTCGTTTGAGAATTCCGGGGCTGATGCAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                             <  2:9649587/140‑1 (MQ=14)
                        gctgATTCGTTTGAGAATTCGGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGaa                                                                                                            <  1:10093434/137‑1 (MQ=255)
                        gCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGaa                                                                                                            <  2:3716774/140‑1 (MQ=255)
                        gCGGATTCGTTTGAGAATTCCGGGCCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGaa                                                                                                            <  1:5714580/140‑1 (MQ=11)
                         cGGATTCGTTTGAGAATTCCTGGGCTTTTGCAAGTGATGGTGGTGGGGGAAGGAGTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAg                                                                                                           <  2:123339/140‑1 (MQ=14)
                         cGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCAATCGGGTCGTAGACTGACGCAACCCACTATCCCTGAAGAGAGAGCCGATCATTAGTCGAAg                                                                                                           >  2:8167726/1‑140 (MQ=9)
                           gATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCt                                                                                                         <  1:1914813/140‑1 (MQ=255)
                             ttCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTtc                                                                                                       <  2:5762932/140‑1 (MQ=255)
                              tCGTTTGAGAAGTCCGGGGCTTTTGCAAGTGATGGTGGTGGGGGAAGGATTCCTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTtct                                                                                                      <  2:9838509/140‑1 (MQ=14)
                                gtttGAGAATTCCTGTTATTTTGTAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCa                                                                                                    <  1:4968771/138‑1 (MQ=11)
                                gtttGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCa                                                                                                    <  2:3379992/138‑1 (MQ=255)
                                gtttGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCa                                                                                                    <  1:7389839/138‑1 (MQ=255)
                                 tttGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGTATTAAACAGCGCTGCGACGATCCCCCATCTTGTCGTTGCCGGCGGCACCGCGCTCTCGCGAACGCACGAGGCGAACCTTGGTCGAAGCTTCTCAt                                                                                                   >  2:5042228/2‑140 (MQ=9)
                                 gtggagaAGTCCGGGGCTTTTGCAAGGGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCAt                                                                                                   <  2:8065855/137‑1 (MQ=14)
                                 attGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCAt                                                                                                   <  1:5240942/139‑1 (MQ=255)
                                  ttGAGTATTCCGGTGCGTTTGCTAGTGATGGTGGTGGGGGACGGATTACTCAGCGCTTCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCTACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATc                                                                                                  <  1:784553/140‑1 (MQ=14)
                                   tGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATcc                                                                                                 <  2:7826290/140‑1 (MQ=255)
                                    gagaATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCCTGCCGAAACTAATTAGAAGCTTCGCAAcca                                                                                                >  1:6077145/1‑139 (MQ=14)
                                      gaATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTCGTCGAAGCTTCTCATCCTTc                                                                                              <  1:3276786/140‑1 (MQ=255)
                                      gaATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTc                                                                                              <  2:1393328/140‑1 (MQ=255)
                                           ggggttcTTTTGGAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGc                                                                                         <  1:11140936/134‑1 (MQ=255)
                                           cggggttttttGTAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGc                                                                                         <  2:11052857/133‑1 (MQ=255)
                                           ccGGGGCTTTTGAACGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGc                                                                                         <  2:537416/140‑1 (MQ=255)
                                            cGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCa                                                                                        <  2:9230741/140‑1 (MQ=25)
                                             tgtcattttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCAt                                                                                       <  1:8516270/135‑1 (MQ=12)
                                                gCTTTTGTCAGTGATGGTGGTGGGCGAAGTTTTTCATATGGCAGAGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                    <  1:1123323/140‑1 (MQ=11)
                                                gCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                    <  1:8364096/140‑1 (MQ=18)
                                                gCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                    <  2:4571897/140‑1 (MQ=18)
                                                gCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                    <  1:7580209/140‑1 (MQ=18)
                                                gCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                    <  1:5981266/140‑1 (MQ=18)
                                                gCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                    <  1:9524249/140‑1 (MQ=18)
                                                gCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                    <  1:89727/140‑1 (MQ=18)
                                                  ttttGTAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGATCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                  <  1:7649871/140‑1 (MQ=12)
                                                  ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                  <  1:8742470/140‑1 (MQ=17)
                                                  ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                  <  2:3469679/140‑1 (MQ=17)
                                                    ttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGa                                                                                <  1:310717/140‑1 (MQ=17)
                                                           tGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGACGAACCTTAGTCGAAGCTTCTCATCCTTCCACGCATGGGCATAAGAttgg                                                                         >  2:8644386/1‑138 (MQ=11)
                                                            gATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATAtttga                                                                        >  2:2372907/1‑138 (MQ=11)
                                                            gATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCAGCGGCAACGCGCTCTCGCTGACGCACGAGCCGTACCTTATTAGAATCGTCTAATCCCTCCCCGCCGTGGCCGAataaatta                                                                        >  1:1031447/1‑135 (MQ=11)
                                                                          aaGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCACGCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCATATCAAACAACCCCGCAAGGGCAGGAAATTTTGTTGCGGATTCgctt                                                          >  1:4458953/1‑137 (MQ=1)
                                                                           aGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAAACCCCACTCGCGGGCGCACGAGTCGCACCGTGGTCGAAGCTTCTAAAACATACCCGCCAGGGCAGAATATGTAAATGGGGAttggttgg                                                         >  1:2495744/1‑140 (MQ=2)
                                                                             gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCTAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGa                                                       <  2:8787669/140‑1 (MQ=11)
                                                                             gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGa                                                       >  2:7986690/1‑140 (MQ=255)
                                                                             gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCACGAGTCGAAACTTGCTCTAACCAACTCAAACATCCACGAATGGGCAGAATATTTAATTGCGGATTAGTTGGGa                                                       >  2:7538307/1‑140 (MQ=11)
                                                                             gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCAGCGGCAACGCTCACTAGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCAACCTTACCCCCAAGGGCAGAATATTTAATATCGGATTCGTTGGGa                                                       >  1:9294981/1‑140 (MQ=11)
                                                                             gATGACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGa                                                       <  1:6349540/140‑1 (MQ=11)
                                                                              aTTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCATCGCTCTCTCTCTGGCGCTCTAGTCGAACCTTGGTCGAAGCTTATCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGaa                                                      <  1:9814870/140‑1 (MQ=11)
                                                                              aTTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCGTGGTCGAAGGTTCTCATCCTTCCCCGCCGTGGCAGAATATTGAATTTCGGATTGGTTGGGac                                                      >  1:10458486/1‑139 (MQ=11)
                                                                              aTTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATCTTTCATTGCGGATTCgattgtga                                                      >  2:6712358/1‑133 (MQ=11)
                                                                                 aCTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCGTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGtt                                                   >  2:1305281/1‑140 (MQ=11)
                                                                                       cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAAACCACTCACGCTGGCGCGCGAGTAGAACCTTGGTCGAAGCTTCTCATACTTACCCCCAAGGGCAGAAATTTTAATTGCGGATTGGTTGGGTAGTTCAGGGa                                             >  1:9657401/1‑140 (MQ=2)
                                                                                         cTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCCTGGGCAGAATATTTAATTGCGGATGCGTTGGGAAGTTAAGGGACt                                           >  2:10159052/1‑140 (MQ=14)
                                                                                          tGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATAGTTTATTGCGGATTCGGTGGGGAGTTCAGGGACtt                                          >  2:4729373/1‑140 (MQ=11)
                                                                                            cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTGTCTCGCTGGCGCTCGAGTGGAACCTTGGTCGAAGCTTCTCATACTTACCCGCATGGGCAGAATATTTAATTGCGGAGTCGTTGGGAAGGTGAGGGACtttt                                        >  1:10741617/1‑140 (MQ=14)
                                                                                            cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGGGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTACTTGCGGATTCGTTGGGAAGTTCAGGGACtttt                                        <  1:9132821/140‑1 (MQ=14)
                                                                                            cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTggg                                                        >  1:7959556/1‑124 (MQ=255)
                                                                                            cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCACTCTCGCTGGCGCTCGAGTCGAACCTTTGTCGAAGCATCTCATCCTTCCCCGCATGGGCAGAAAATTTAAATGCGGATTCGGTGGGAAGTTCAAGGAAtttg                                        >  2:745630/1‑139 (MQ=11)
                                                                                            cgcgcTTAGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTGACATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGTTGGGACGTTCAGGGCCtttt                                        >  2:5011369/1‑140 (MQ=11)
                                                                                            cgcgcTGCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGCGTCGAACCGTGGTCGAAGCTTCTCATCCATACCCGCAGGGGCAGAATTTTTATTTGCGGATGCGGTGGGAAGTTCCGGGACattt                                        >  2:9344774/1‑140 (MQ=11)
                                                                                             gcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCGTGGTCGAAGCGTCTCAAACTTCCCCGCAAGGGCAGAAAATTTAATTGCGGATTCGTTGGGCAGTTAAGGGACTTTTg                                       >  1:9421295/1‑140 (MQ=11)
                                                                                               gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGTCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGaa                                     <  1:5020857/140‑1 (MQ=255)
                                                                                                 ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCCAGTCGCACCGTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCCGTCTAGTTTATTGCGGATTCGTTGGGGAGTTCAGGGTCTTGTGAAAg                                   >  2:6438203/1‑140 (MQ=11)
                                                                                                   cGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTAGCTGGCGCTCGAGTCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGTAAGTTCAGGGACTTTTGAAAGTg                                 <  1:6966424/140‑1 (MQ=11)
                                                                                                    gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGA                                <  2:3792508‑M1/140‑1 (MQ=255)
                                                                                                    gCCCTTCGGGTAGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGA                                <  1:1617562‑M1/140‑1 (MQ=255)
                                                                                                     cccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTGGAGTCTATCCTTTGTCGAAGCTTATCATCCTTACCCGCTTGGGCAGATTTTTTAATTGCGTATTAGTTGGGTTGTTGTGGTACTTTTGAAAGTGAt                               <  2:2106116/140‑1 (MQ=2)
                                                                                                      ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGACCCTTGGTGGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTTATTGCGGATTCGTTGGGGAGTTCCGGGGCGTTTGAAAGTGATG                              >  2:11511974‑M1/1‑140 (MQ=255)
                                                                                                       cTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGTAGTTCAGGGACTTTTGAAAGTGATGG                             <  1:11487752‑M1/140‑1 (MQ=255)
                                                                                                        ttCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCTAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGT                            <  1:1143431‑M1/140‑1 (MQ=255)
                                                                                                          cGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGG                          <  2:6807585‑M1/140‑1 (MQ=255)
                                                                                                             gTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAAATTCGGAATCGGTGTGAAGTTCAGGGAATTTTGAAAGTGATGGAGGTGG                       >  2:10552495‑M1/1‑140 (MQ=255)
                                                                                                                gTTGCCTGCGGCAACGCTCTCACGCTGGCGCTCGAGTCGAACCGTGGTCGAAGCTTCTCATCCATCCCCGCATGGGCAGAATTTTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGGGGGGG                    >  1:8653038‑M1/1‑140 (MQ=255)
                                                                                                                 ttGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGA                   <  1:7222467‑M1/140‑1 (MQ=255)
                                                                                                                 gtGCCTGCGGCATCGCTCTCGCGCTGCCGCTCCAGTCGAACCTTGGTCGAAGCTTAGAAGCCTGCCCCGCATGGGCAGATCATTGAATTGCGGATTCGTTGGGAAGTTCTGGGACTTTTGAACGTGAAGGTGGTGGGGGa                   <  2:7018354/139‑1 (MQ=255)
                                                                                                                  tGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGTCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAA                  <  1:4639910‑M1/140‑1 (MQ=255)
                                                                                                                  tGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAA                  <  1:1059381‑M1/140‑1 (MQ=255)
                                                                                                                      ggcGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCCTGGGCAGCAGATTTGATTGCGGATTCGGTGGTGAGTTCAGGGACTTGTGAAAGTGAGGGGGGGGGGGGAAGGAT              >  2:7268354‑M1/2‑140 (MQ=255)
                                                                                                                           cAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaa         >  1:1251415‑M1/1‑136 (MQ=255)
                                                                                                                               gCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaacctt     <  1:5419030‑M1/140‑9 (MQ=255)
                                                                                                                                  ctctcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcga  >  1:288166‑M1/1‑129 (MQ=255)
                                                                                                                                           |                                                                                                                                  
CCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTG  >  NZ_CP025268/1292843‑1293112

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑