Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0252682,233,2390TA30.5% 321.8 / 69.0 202intergenic (+139/+234)yohP/dusCsmall membrane protein YohP/tRNA dihydrouridine(16) synthase DusC
Reads supporting (aligned to +/- strand):  ref base T (31/99);  new base A (57/0);  total (102/100)
Fisher's exact test for biased strand distribution p-value = 1.02e-25
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 209 total aligned reads displayed.

AATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTT  >  NZ_CP025268/2233101‑2233378
                                                                                                                                           |                                                                                                                                           
  ttaattcaTGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTAATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCa                                                                                                                                          <  2:8322677/140‑1 (MQ=255)
  ttaattaaTGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCa                                                                                                                                          <  2:9408685/140‑1 (MQ=255)
     attaatGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCTGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCAccc                                                                                                                                       <  1:2873426/140‑1 (MQ=255)
      ttaatGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCAcccc                                                                                                                                      <  1:5720975/140‑1 (MQ=255)
          tGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCTGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCggg                                                                                                                                  <  1:5082078/140‑1 (MQ=255)
           gTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCATGGGGCGGCCAAACGCCCCCGCCCCC‑AGCACCCCCGGGc                                                                                                                                 >  2:1486806/1‑140 (MQ=255)
            tcatcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAAACGCCGCCGCCCCC‑GGCAACCCCCGGcg                                                                                                                                >  1:9678615/1‑139 (MQ=255)
               tcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTg                                                                                                                             >  2:5037673/1‑140 (MQ=255)
                    tCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGGCCATCGCCGCCGCCCCC‑AGCACCCCCCGGCGCTGGCGaa                                                                                                                        >  2:11104205/1‑140 (MQ=25)
                      cGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCCGGGGGCGGGCCCACGCCGCCCCCCCC‑AGCACCCCCCGGCGCTGGCGcaca                                                                                                                      >  1:9196456/1‑140 (MQ=25)
                              aCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGGAGGGGGGGGCCAAAAGCCCCCCCCCCC‑CGCACCCCCCCGCTCAGGCGGACaaaaaaacc                                                                                                              >  1:6135615/1‑135 (MQ=255)
                              aCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGGGGCCCATACCCCCCGCCCCC‑CGCACCCCCCGGCTCTGGCGCACAAAATagcc                                                                                                              >  1:7690772/1‑140 (MQ=21)
                               cGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATcgccg                                                                                                             <  1:3987909/140‑1 (MQ=255)
                                 agaATATTTCAGTCTCTCATCCTGGTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCt                                                                                                           <  2:8228539/140‑1 (MQ=255)
                                   aaTATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATAGCCCCCGCCCCC‑AGCCCCCCCGGGCTCAGGCGAACAAAATagccccagc                                                                                                         >  2:1459432/1‑135 (MQ=21)
                                         tCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTg                                                                                                   <  1:11543418/140‑1 (MQ=255)
                                          cAGGCTCGCAGCCGGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCACGGGGCGGGCACTCGGCGGCGCCCCC‑GGCACGCCCGGGCTCTGGCGGACATAATCGCGGGGGCGCGGTGc                                                                                                  >  2:8112137/1‑140 (MQ=18)
                                            gTCTCTCATCCTGTTGCGCTCCTGTCCTGTGCATTGCTTCATATAATCACTGGCGCCAGGAGCGCGCCGGGGGCGGCCACGCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCGGCGCGGTGccc                                                                                                <  2:1627125/140‑1 (MQ=18)
                                            gTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGccc                                                                                                <  2:3316720/140‑1 (MQ=255)
                                             tctctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGGCGGGGGCGGCCAAACGCCCCCCCCCCC‑AACACCCCCCGGCACAGGCCAAAAAAAACGCCCCAGCGCCGTGcccc                                                                                               >  1:6983980/1‑139 (MQ=255)
                                             tctctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCt                                                                                               <  1:8493293/140‑1 (MQ=255)
                                             tctctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCC‑AGCACCCCCGGGCTCTGGCGAACAAAAACGCCGCAGCGCGGTGCCCt                                                                                               >  2:6986245/1‑140 (MQ=255)
                                                 tcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGGGGGGGGCGGCCCCACCACCCCCCCCCC‑CCCACCCCCCCCCACAGGCGAACCAAAACACCCCAGCGCGGGGcccaccgc                                                                                           >  1:2942681/1‑135 (MQ=16)
                                                 tcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGc                                                                                           <  1:6474130/140‑1 (MQ=255)
                                                 tcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGc                                                                                           <  2:3944956/140‑1 (MQ=255)
                                                 tcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAAACGCCGCCCCCCCC‑AGCACCCCCCCGCACATGCGAACAAAAAACCCCCAGCGCGCTGcccaccgc                                                                                           >  1:8866510/1‑135 (MQ=18)
                                                    tCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTa                                                                                        <  1:4708925/140‑1 (MQ=255)
                                                      cTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGGAGGGGGGGGCCAAAACCCCCCCCCCCC‑AGCACCCCCCGGCTCAGGCGCAAAAAAAAACCCCAGCGCGGTGGCCACCGCTTAta                                                                                      >  1:11299562/1‑139 (MQ=255)
                                                         ttGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCCATAGCCGCCCCCCCC‑AGCCCCCCCCGGCACAGGCGAACAAAAACCCCGCTGCGCGGTGCCCACGGCATATacca                                                                                   >  2:5724595/1‑139 (MQ=18)
                                                         ttGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCCAAACCCCCCCCCCCC‑AGCACCCCCCGGCACAAGCGAACAAAAACACCCCAGCGCGGGGCCCACGGCatataaca                                                                                   >  2:1277278/1‑136 (MQ=16)
                                                         ttGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCACTAGCCGCCGCCCCC‑AGCACCCCCCGGCTCTGGCGAACAAAATACCCCCTGCGCGGTGCCCACGGCGTATccca                                                                                   >  2:7548049/1‑139 (MQ=18)
                                                         ttGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAAAAGCCCCCCCCCCC‑AGCACCCCCCCGCGCAGGCGAACAAAAAAGCCCCAGCGCGGTGCCCGCGGCGTATacca                                                                                   >  1:10699196/1‑139 (MQ=18)
                                                           gcgcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTa                                                                                 <  1:10035075/140‑1 (MQ=255)
                                                              cTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCACGGCTTATCCCTTACgg                                                                              >  2:11501089/1‑140 (MQ=255)
                                                              cTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATAGCCGCCGCCCCC‑AGCACCCCCGGGCTCTGGCGAACAAAATAGCCGCGGCGCGGTGCCCTCGGCTTATCCCATACgg                                                                              >  2:7628885/1‑140 (MQ=18)
                                                              cTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCACGGGGCGGCCCAACGCCCCCGCCCCC‑AGCACCCCCGGGCTCTGGCGAACAAAATAGCCGCTGCGCGGTGACCTCGGCTTATCCCATAAgg                                                                              >  2:10051053/1‑140 (MQ=18)
                                                               tCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCTGGGGGGGGGCCATCGCCCCCGCCCCCATCCACCCCC‑GGCGCTGGCGTAAAAAATAGCCGCAGGGCGGTGGCCACGGCTTTTACCTTAgggg                                                                             >  2:1376588/1‑139 (MQ=12)
                                                                   gTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGGGGGCAAAATCCCCCGCCCCC‑ACCCCCCCCCGGCGCTTGCGGACCAAAAAACCCCAGCGCCGGGCCCACGGCGTATACCATAAGGCAAcc                                                                         >  2:5421685/1‑140 (MQ=255)
                                                                       tgtgCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCC‑AGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCATACGGCTACCgggg                                                                     >  2:8580440/1‑139 (MQ=255)
                                                                         tgCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGGCGGGGGCGGCCAAAAGCCGCCCCCCCC‑CGCACCCCCGCGCTCTGGCGAACAAACAACCCCCAGCGCCGTGCCCACGGCATAACACAGACGGCGAACCGGTCg                                                                   >  2:6328184/1‑140 (MQ=9)
                                                                         tgCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAAACGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCCGCTTATCCCGTACGGCTACCGGGTCg                                                                   >  2:10385932/1‑140 (MQ=255)
                                                                           cATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCggg                                                                 <  2:2105165/140‑1 (MQ=255)
                                                                           cATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCggg                                                                 <  1:2299058/140‑1 (MQ=255)
                                                                           cATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCggg                                                                 <  1:8933304/140‑1 (MQ=255)
                                                                           cATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCCCCGCCGCCCCC‑AGCACCCCCCGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCACCGCTTATCCCATACGGCTAACGGGTCggg                                                                 >  2:9305292/1‑140 (MQ=14)
                                                                             ttGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcg                                                               <  2:10191302/140‑1 (MQ=255)
                                                                             ttGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcg                                                               <  2:9227458/140‑1 (MQ=255)
                                                                             ttGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcg                                                               <  1:11086359/140‑1 (MQ=255)
                                                                              tGCTTCATATAATCACTGGCGCAAGGAGCGCGGAGGGGGCGGCCAAACGCCGCCGCCCCC‑AGCACCCCCCCGCACATGCGAACAAAAAATCCCCGGCGCGGTGCCCACCGCATATAACATAACGCTAACCGGGCGGgcgc                                                              >  2:8073454/1‑140 (MQ=255)
                                                                              tGCTTCATATAATCACTGGCGCAAGGAGCGCGCCGGGGGGGGCCCAACGCCGCCGCCCCC‑AGCACCCCCCGGCTCTGGGGCACAAAAACGCCGCGGCGCGGTGCCCGAGGCTTTTACCATAAGGCTACCCGGTCgggggg                                                              >  2:9068543/1‑137 (MQ=9)
                                                                              tGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcgc                                                              <  1:6048318/140‑1 (MQ=255)
                                                                                cTTCATATAATCACTGGCGCAAGGAGCGCGGGGGGGGGGGCCCAAAGCCCCCGCCCCC‑AGCAACCCCCGGCAAAGGCGCACAAAAAACCCCCAGCGCGGGGGCCACAGCGTATACCATACGGCGAACCGGGCGGGGGCGa                                                            >  2:5604228/1‑140 (MQ=255)
                                                                                cTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGa                                                            <  1:1212306/140‑1 (MQ=255)
                                                                                cTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAAACGCCGCCGCCCCC‑AGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCAGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcgcca                                                            >  2:8799009/1‑138 (MQ=255)
                                                                                cTTCATATAATCACTGGCGCAAGGAGCGCGCACGGGGCGGCCAATAGCCCCCCCCCCC‑TGCACCCCCGGGGGCTGGCGCACAAAATCGCCGCTGCGCGGTGCCCTCGGCGGATCCCTTACGGCGACCCGGTCGGGcgcgc                                                            >  2:5053298/1‑139 (MQ=14)
                                                                                  tCATATAATCACTGGCGCAAGGAGCGCGCCGGGGGCGGCCAAACGCCCCCGCCCCC‑AGCACCCCCCGGCTCTGGCGAACAAAATAGCCGCATCGCGGTGCCCACCGCATATCCCATACGGCGACCCGGTCGGGcgcgccg                                                          >  2:687809/1‑137 (MQ=14)
                                                                                   cATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCCGGCTATGGCCAAAAAAATAGCCGCAGCGCGGGGCCCACGGCATATCCCATAAGGCTACCGGGTCGGGCGCGAGGt                                                         >  2:7717648/1‑140 (MQ=14)
                                                                                        aaTCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACAt                                                    <  2:3914946/140‑1 (MQ=34)
                                                                                        aaTCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAAACGCCGCCGCCCCC‑AGCAACCCCGGGCTCTGGCGAACAAAAACGCCCCTGCGCCGTGCCCTCCGCTTATCCCGTACGGCAACCCGGTCGGGCCCGCGGTAACaa                                                    >  2:9838476/1‑139 (MQ=11)
                                                                                         aTCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATc                                                   <  1:5037331/140‑1 (MQ=33)
                                                                                          tCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCCATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCACGGCTTATACCATACGGCAACCCGGTCGGGCGCGAGGTAACAAcc                                                  >  2:7873455/1‑140 (MQ=11)
                                                                                          tCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCCAAAGCCCCCCCCCCC‑AGCCCCCCCCCGCACTGGCGCACAAAATACCCCCGGCGCGGGGGCCACCGCATATCCCAAAACGCAACCCGGTCCGGCGCGCGGTAACAAcc                                                  >  2:4816052/1‑140 (MQ=2)
                                                                                          tCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAAACGCCCCCGCCCCC‑AGCACCCCCCGGCTCAGGCGAACAAAAAAGCCGCGGCGCGGGGCCCGCGGCTTATCCCATAAGGCGACCCGGTAGGGCGCGAGGTAACAAcc                                                  >  2:6219559/1‑140 (MQ=11)
                                                                                               ggCGCAAGGAGCGCGCAGGGGGCGGCCAATAGCCGCCGCCCCC‑TGCACCCCCCGGCTCTGGCGAACAAAAAAGCCGCTGCGCGGTGCCCTCGGCTTATCCCATTCGGCTACCCGGTCGGGCGCGAGGTACCATCCCTGtc                                             >  2:7672550/1‑139 (MQ=11)
                                                                                                   cAAGGAGCGCGCAGGGGGCGGCCAAAAGCCGACCCCCCC‑AGCAACCCCCGGCACTAGCGAACAAAATAGCCCCTGCGCGGTGCCCACCGCTTAACCCATAAGGCTAACGCGTCCGGCGCGAGGTAACATCCCATTAAAAc                                         >  2:903414/1‑140 (MQ=2)
                                                                                                    aaGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAcg                                        <  1:1935014/140‑1 (MQ=32)
                                                                                                    aaGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAcg                                        <  1:7862976/140‑1 (MQ=32)
                                                                                                     aGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAcgc                                       <  2:8642917/140‑1 (MQ=32)
                                                                                                        aGCGCGGAGGGGGCGGGCCATCGCCGCCGCCCCC‑TGCCCCCCCCGGCTCTGGCGAACCAAATCGCCGCTGCGCGGTGCCCTCGGGCTATCCCATACGGCTACCCGGGCGGGCGCGCGGGAACAAACCGGGAAAAAGCGcc                                    >  2:10259663/1‑140 (MQ=2)
                                                                                                        aGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGcc                                    <  2:9094999/140‑1 (MQ=32)
                                                                                                          cgcgcAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt                                  <  1:3372444/140‑1 (MQ=32)
                                                                                                          cgcgcAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt                                  <  2:2804687/140‑1 (MQ=32)
                                                                                                          cgcgcAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt                                  <  2:6135614/140‑1 (MQ=32)
                                                                                                          cgcgcAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt                                  <  2:3512714/140‑1 (MQ=32)
                                                                                                           gcgcAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTc                                 <  2:287789/140‑1 (MQ=32)
                                                                                                            cgcAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCa                                <  1:3285458/140‑1 (MQ=32)
                                                                                                            cgcAGGGGGCGGCCAATCGCCGCCGCCCCC‑ATCACCCCCGGGCACTGGCGAACAAAAAAGCCGCAGCGCGGGGCCCACGGCAAATACCATAACGCAAACCGGTCGGGCGCCAGGTAACAACCCAGTAAAAAGCGcccccc                                >  2:10697106/1‑137 (MQ=2)
                                                                                                               aGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGcc                             <  2:11213251/140‑1 (MQ=32)
                                                                                                                gggggCGGCCTATCGCCGCCGCCCCC‑TGCACCCCCGGGCTGTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGccc                            <  1:1804471/140‑1 (MQ=17)
                                                                                                                 ggggCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCca                           <  1:5592359/140‑1 (MQ=32)
                                                                                                                   ggcggcCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca                         <  1:6219560/140‑1 (MQ=32)
                                                                                                                   ggcggcCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca                         <  1:4646747/140‑1 (MQ=32)
                                                                                                                   ggcggcCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca                         <  2:1986553/140‑1 (MQ=32)
                                                                                                                   ggcggcCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca                         <  1:9305293/140‑1 (MQ=32)
                                                                                                                   ggcggcCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca                         <  2:5862039/140‑1 (MQ=32)
                                                                                                                      ggcCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATcc                      >  2:10910540/1‑140 (MQ=32)
                                                                                                                      ggcCAAAAGCCGCCGCCCCC‑TGCACCCCCCGGCTCTGGCGAAAAAAAAACCCGCTGCGCGGTGCCCACGGCATATACCTTACGGCAACCCGGTCGGGCGCGAGGTAACATACCAGTAAAACGCGCCCACAGCCCACAAcc                      >  1:6621536/1‑140 (MQ=11)
                                                                                                                       gcCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCa                     <  1:7405965/140‑1 (MQ=32)
                                                                                                                       gcCAATCGCCGCCGCCCCC‑AGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCATAAGGCTACCCGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCa                     >  1:3670131/1‑140 (MQ=255)
                                                                                                                        ccAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAt                    >  1:8311362/1‑140 (MQ=32)
                                                                                                                           aTCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAtgtg                 >  2:9721659/1‑140 (MQ=32)
                                                                                                                             cgccgccgcCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTGATCCCGTAGGGCTACCGGGTCGGGCGCGAGGGAACATCCCTGTAAAGCGCGCCCTCAGCCCACAGCCCTGTggg               >  2:4234025/1‑140 (MQ=11)
                                                                                                                                  ccgccCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTATATGGCGCCGTCGGCCCACTTCCATGTGGGCGGcc          >  2:11618378/1‑140 (MQ=11)
                                                                                                                                  ccgccCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGcc          <  1:7162617/140‑1 (MQ=32)
                                                                                                                                  ccgccCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGcc          <  1:4778709/140‑1 (MQ=32)
                                                                                                                                    gccCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGcccc        <  1:10042595/140‑1 (MQ=32)
                                                                                                                                       ccc‑TGCACCCCCGGGCTCTGGCGTACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGc     >  2:4144906/1‑140 (MQ=17)
                                                                                                                                           tGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCtt  >  1:4859508/1‑140 (MQ=32)
                                                                                                                                           tGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCtt  >  1:4933373/1‑140 (MQ=32)
                                                                                                                                           tGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCtt  >  2:6717949/1‑140 (MQ=32)
                                                                                                                                           |                                                                                                                                           
AATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCC‑TGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTT  >  NZ_CP025268/2233101‑2233378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑