Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP025268164,4440TA20.1% 345.5 / 17.9 149intergenic (+79/‑117)hrpB/mrcBATP‑dependent helicase HrpB/bifunctional glycosyl transferase/transpeptidase
Reads supporting (aligned to +/- strand):  ref base T (29/90);  new base A (29/1);  total (58/91)
Fisher's exact test for biased strand distribution p-value = 1.07e-13
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 176 total aligned reads displayed.

GTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCC  >  NZ_CP025268/164306‑164583
                                                                                                                                          |                                                                                                                                           
gtggggccggccGCCCCGGCAAATCCTCCACCGACGCGCCGGACTAAAATTTTTTCGTCGGTTTGTTTTTCCCCCTCCCCGTGGGGGTGGGGGCGGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCctc                                                                                                                                            <  1:7403260/136‑1 (MQ=255)
ggcTGGCCGGACGACCCGGCAAATACTGCACCGACGCGCCGGACGACAAAGTATTCGTAAGGTTGGTTTTCTCCCTCACCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCctc                                                                                                                                            <  2:6887935/138‑1 (MQ=255)
gTCTGGCCGGCCGACCCGCCAAATACTCCACCGACGCGACGGACTAAAAATTATTCGTATGGTTGGTTTTCACCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCctc                                                                                                                                            <  1:9732643/140‑1 (MQ=37)
gTCTGGCCGGACGCCCCGTCAAATACTGCACCGACGCGACGGCCGAAAAAGTATTCGTAAGGTTGGTTTTCGCCCTCTCCCTGGGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCctc                                                                                                                                            <  2:7824639/140‑1 (MQ=39)
gTCTGGCCGGACGCCCCGGCAAATACTGCCCCGACGCGAGGGACTAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGTGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCctc                                                                                                                                            <  2:1398613/140‑1 (MQ=38)
gTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGGTCACCCTCACCCTAACCctc                                                                                                                                            >  2:10270599/1‑140 (MQ=255)
gTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCACCCACACCCTAACCctc                                                                                                                                            >  2:9251952/1‑140 (MQ=255)
gTCGGGCCGGCCGCCCCGGCAAATACTGCACCCACGCGAGGGACGAAAATGTATTCGTAAGTTTGGTTTTCGCCCTCTCCGTGTGGTTGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCctc                                                                                                                                            <  2:5718077/140‑1 (MQ=255)
atcgggCGGGCCGACCCGCAAAATCCTCCACCGACGCGAGGGACTAAAATTTTTTCTTATGGTTGGTTTACCCCCTCTCCGTGTGGGAGCGGGCGGGGGTGAGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCctc                                                                                                                                            <  1:5494758/136‑1 (MQ=255)
  cTGGCCGGCCGACCGGGAAAATCCTGCACCGACGCGAGGGAATAAATATTATTTGTATGGTTGTTTTTCTCCCTCCCCGTGTGGGCGTGGGCGGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCtctc                                                                                                                                          <  1:6023922/140‑1 (MQ=255)
   gggCCGCACGACCCGGCAAATACGGCACCCCCGCGACGGACCAAAAAGTATTCGTACGGTTGTTTTTCGCCCTCCCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTcc                                                                                                                                         <  1:10956881/139‑1 (MQ=37)
       cGGACGCCCCTGAAAATCCTGCCCCCAGGCGACGTACGAAAATGTTTGCTTAAGGTTGTTTTTCTCCCACTCCGGGGGGTCGCGGGCGGGGGTGGGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCa                                                                                                                                     <  1:3887415/140‑1 (MQ=255)
        ggACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGCGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGGCCCGCACCCCAACCCACAcccccca                                                                                                                                    >  1:2590493/1‑136 (MQ=37)
         gacgacCCGGCAAATACTCCACCGACGCGCCGTACGAAAAATTATTCGTAAGTTTGGTTTACTCCCTCACCCTGTGGGAGAGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAg                                                                                                                                   <  2:5865312/140‑1 (MQ=38)
         gacgacCCGGAAAATCCTGCACCGCCGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCGCTCCCGGGGGGAGCGGGCCGGGGTGCGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAg                                                                                                                                   <  2:5865271/140‑1 (MQ=255)
         gacgacCCGGAAAATCCTGCACCGACGCGACGGACGAAAAAGTTTTCGTATGGTTGTTTTTCTCCCTCACCCTGTGGGAGAGGGCCGGGGTGTGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAg                                                                                                                                   <  1:8816661/140‑1 (MQ=38)
         gacgacCCGGAAAATCCGGCCCCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCACACCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAg                                                                                                                                   <  2:8400094/140‑1 (MQ=38)
         gacgacCAGGAAAATCCTTCACCGACGCGACTTACGAAAATGTATTCTTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGTGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAg                                                                                                                                   <  2:7514590/140‑1 (MQ=37)
         gaccacCCGCCACATCCGGCACCGACGCGACGGACTAAAACGTAGTCGTTAGGTGTGTTTTATCCCTCTCCCTTTGTTATAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAg                                                                                                                                   <  2:9555950/140‑1 (MQ=25)
             ccccGGAAAATACTGCACCTCCGCGACGTACTAAAATGTATTCGTAAGGTTGTTTTTCCCCCTCACCCTGTGGGTGAGGGCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGgag                                                                                                                               <  1:8930186/139‑1 (MQ=255)
             acCCGGCAAATACGGCACCGACGCGACGTAAGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCACCCTGTGGTAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGgag                                                                                                                               <  2:520847/140‑1 (MQ=38)
               ccgcaaaaTACTGCCCCGCCGCTACGGACTAAAATTTATTCTTATGTTGGGTTTTCTCCCCCCCCCTGGGGTTGTGGGCGGGGTTGAGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGagag                                                                                                                             <  1:789010/135‑1 (MQ=255)
               ccGGCAAATACGGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGGGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCGCCCTCAAGGGagag                                                                                                                             <  2:10198764/140‑1 (MQ=255)
                    aattACTCCACCGCCGCGCGGTACTAAAAATTATTCTTATGTTTGTTTTTCACCCCCCCCTTGTGGTTTCGGGCGGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGAc                                                                                                                        <  1:9056838/137‑1 (MQ=255)
                        aCTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCACCCTCACCCTCACCCTCTCCCGCACGGGAGTGGGGGCCggt                                                                                                                    >  2:9106997/1‑138 (MQ=37)
                        aCTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCACCCTCACCCAAAACCACACCCGCAAGGGGGAGGGGGCCgct                                                                                                                    >  1:7622857/1‑138 (MQ=37)
                         cTGCACCGACGCGACGGACGTAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAGCCGCGCGCACGGTCCCCCTCACCCAAACCCTCTCCCTCAAGGGCGAGGGGACCGagc                                                                                                                   >  2:7764670/1‑138 (MQ=37)
                          tGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACTGTCACCCTCACCCAAAAACACTCCCCCCAAGGCGAGGGGAACgcaca                                                                                                                  >  2:2333246/1‑136 (MQ=21)
                            cACCGACGCGACGGACGAAATAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTGACCCTCACCCTAAACCACTCCCTCTAGGGTGAGGGGACCGATagag                                                                                                                >  2:1907864/1‑140 (MQ=37)
                            cACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGGCCCGCCCCCAAAACCACACCCACAACGGGGAGGGGGcccaaagag                                                                                                                >  2:2247674/1‑133 (MQ=21)
                               cgacgcgacgGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTGACCCACCACCAAACCCACACCCACAAGGGGGTGGGGGCCGAAAGAGcac                                                                                                             >  2:4312125/1‑140 (MQ=21)
                               cgacgcgacgGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCCCCCACAACCAAAACCACACCCACAAAGGAGTGGGGACCCAACCAGcac                                                                                                             >  2:831458/1‑140 (MQ=21)
                                gacgcgacgGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGcaca                                                                                                            <  2:10479663/140‑1 (MQ=255)
                                 acgcgacgGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACGTTGACCCTCACCCAAACCCACTCCCTCAAGGGGGCGGGGGCCGATAGAGcacca                                                                                                           >  2:9071681/1‑138 (MQ=37)
                                 acgcgacgGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACGTGCTCCCTCACCCTAACCCACTCCCGCAAGGGAGAGGGGGCCGATCGAGCCCaa                                                                                                           >  2:2071585/1‑140 (MQ=37)
                                 acgcgacgGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCCCACCCAAAACCAGAACCACACGGGCGCGGGGACCGCACGAGgacca                                                                                                           >  1:8783217/1‑138 (MQ=21)
                                 acgcgacgGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCACCCGCACCCGAACCCACACCCACAAGGGGGAGGGGACCCATCGAGCACaa                                                                                                           >  2:4723994/1‑140 (MQ=37)
                                  cgcgacgGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGGGAGGGGTCCGATCGAGCACaaa                                                                                                          >  2:4989899/1‑140 (MQ=255)
                                      cctgacgAAAAATTATTCTGATGGTTGGTTTTCGCCCTCTCCGTGTGGTTGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAAtttt                                                                                                      <  1:173692/137‑1 (MQ=37)
                                      acggacgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCAACCGCACCCGAAACCTCTCCCACAAGGGAGATGGGACCGATCGAGGCCAAAtttt                                                                                                      >  2:1655457/1‑140 (MQ=37)
                                           ctaaaatGTATTCGTATGGTTGTTTTTCTCCCTCTCCGTGTGGGAGCGGGCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTgagag                                                                                                 <  1:4921274/138‑1 (MQ=39)
                                           cgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTgagag                                                                                                 <  2:10994185/140‑1 (MQ=255)
                                              caatgTATTGGTACGGTGGGTTTTCTCCCTCTCCCTGTGGGTGTGGGCGGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGata                                                                                              <  1:151059/136‑1 (MQ=38)
                                               aatgTATCCTTACGGTTGGTTTACCCCCTCTCCCTGGGGGTGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGatat                                                                                             <  1:5458394/137‑1 (MQ=38)
                                                aaGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCACAGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtc                                                                                            <  2:2595759/140‑1 (MQ=255)
                                                    aTTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACACCCAAACCCACACCCCCAAAGGAGCGGGGACCCCACGCGCACAAAAATTGTGAGataaaataa                                                                                        >  1:9624178/1‑134 (MQ=18)
                                                     tacGTAAGGTGGGTTTACGCCCTCTCCCTGTGGGAGAGGGCCGGGTTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtcttctt                                                                                       <  1:10309565/138‑1 (MQ=39)
                                                      tcttAAGGTGGTTTGTCTCCCTATCCCTGTGGGATTGGGCGGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtcttcttc                                                                                      <  1:4610587/137‑1 (MQ=38)
                                                      tCGTATGTTTGGTTTTCTCCCTCGCCCTGTGGGTGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtcttcttc                                                                                      <  1:10494345/140‑1 (MQ=255)
                                                      tCGTATGTTTGGTTTTCTCCCACTCCCGGTGGGTGAGGGCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtcttcttc                                                                                      <  1:11414870/140‑1 (MQ=39)
                                                      tCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtcttcttc                                                                                      <  2:7582589/140‑1 (MQ=255)
                                                      tCGTAAGGTTGGATTTCGCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtcttcttc                                                                                      <  2:11491177/140‑1 (MQ=255)
                                                      gcGTATGGTTGGTTTCCCCCCTCTCCCTGGGGGTGAGGGCGGGGGGGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtcttcttc                                                                                      <  1:190200/139‑1 (MQ=38)
                                                      gcGTACGGTTGGTTTTCTCCCACGCCCAGGCGGTGAGGGCCGTGGTTCAGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCACTCCCTCAAGGGAGAGGGGACCGAACGCGCACAAATATTGAGAGATAtcgtcttc                                                                                      <  2:6394461/139‑1 (MQ=255)
                                                        ttaggggtggttTTCGCCCGCTCCGTGGGGGCGTGGGCCGGGGTGCGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTg                                                                                    <  1:4520079/133‑1 (MQ=37)
                                                           aGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCt                                                                                 <  2:10362651/140‑1 (MQ=255)
                                                                 gttTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACACCCAAAACCACACCCACAACGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTATGTCtttttaa                                                                           >  2:7941227/1‑135 (MQ=25)
                                                                      ctccctctccctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACACCCTAAACCAAACCCACAAGGGGGAGGGGGCCGGTCGTGCACAAAATTTGAGAGATATATTATTATGTGTTGTAACagaag                                                                      >  2:6208550/1‑140 (MQ=21)
                                                                      ctccctcgccctGGGGGAGAGGGCCGGGGTGCGGCCCTCAGCGCGCACGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACagaag                                                                      <  1:8657591/140‑1 (MQ=39)
                                                                           tctccctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCACCAGGGAGAGGGGGCCGCTCGAGCCCCAATTTTGTGAGATATATTATTCTGTAGTGTAAAAGAATAACac                                                                 >  2:1756852/1‑139 (MQ=25)
                                                                                   tgGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTGCACCCGCACCCAAACCCTCTCCCACAAGGGAGTTGGGACCGATCGAGCCCAAAATTTGAGAGATATAATAATATGTCTTGTAAAAGAAGAACAGAAAATCgg                                                         >  2:2981526/1‑140 (MQ=255)
                                                                                       agagGGCCGGGGTGAGGGCATCCGCGCGCACGTTCACCCACACCCGAAACCTATCCCACCAGGGTGAGGGGACCGCTCGAGCCCAAAATTTGTGAGATATATTATTAAGTGTTGTTACAGAAGGACAGGAAAACGGGcgt                                                     >  2:7922881/1‑138 (MQ=255)
                                                                                       agagGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAAACCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTTTGAGATATCTTCTTCTTTCTTGTAACAGAAGAAAAGAAAATCGGGCtt                                                     >  2:9687811/1‑140 (MQ=255)
                                                                                        gtgggCCGGGGTGTGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTATTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCttt                                                    <  2:10315524/138‑1 (MQ=255)
                                                                                         agGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCTTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCtttt                                                   >  2:5821249/1‑140 (MQ=255)
                                                                                          gggCCGGGGTTCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTg                                                  <  1:10768091/140‑1 (MQ=255)
                                                                                          gggCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTg                                                  <  2:10815098/140‑1 (MQ=255)
                                                                                           ggCCGGGGTGAGGGCATCAGCGCGCACGGGGACCCACACCCTAACCCACTCCCGCAAGGGCGGGGGGACCCATCGCGCACAAATTTTGAGAGCTATCTTATTGTGTGTGGGAACCGAAGAACAGCAAATAGGGCGTTTgc                                                 >  2:8837982/1‑140 (MQ=255)
                                                                                             ccGGGGTGAGGGCATCAGCGCGCACGTTGACCCCCCCCCGAACCCTCTACCGCCAGGGCGAGGGGACCCCTCGCGCGCCAAATTTGGGAGAAAAAATCATCTGTCTTGTTACAGAAGAACAGAAAATCTGGCtttttagc                                               >  2:11448207/1‑136 (MQ=255)
                                                                                               ggggTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTACCCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCt                                             <  2:5052142/140‑1 (MQ=255)
                                                                                               ggggTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCt                                             <  1:4793181/140‑1 (MQ=255)
                                                                                               ggggTGAGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCt                                             <  2:3867458/140‑1 (MQ=255)
                                                                                                     aGGGCATCAGCGCGCACGTTCCCCCCCAACCAAACCCACAACCACAACGGAGTGGGGCCCGATCGAGCACAAAATTTGTGAGATATATTATTATGTATTGTAACAGAAGAACACAAAATAGGGCGTTTGCGCCGGAataa                                       >  2:10353182/1‑139 (MQ=255)
                                                                                                         cctCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCg                                   <  2:416748/138‑1 (MQ=255)
                                                                                                         cctCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCg                                   <  1:2071585/138‑1 (MQ=255)
                                                                                                         cctCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCg                                   <  1:6334842/138‑1 (MQ=255)
                                                                                                         cATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCg                                   <  1:3984627/140‑1 (MQ=255)
                                                                                                          aTCAGCGCGCACGTTCACCCACACCCGAACCCACACCCACCACGGTGAGGGGGCCGCACCAGCACAAATTTTGATTTATAAAATCTTATGTGTTGTAAAACAATCACACAAAAAACGGCTTTTTCGCCGGGATATTGAgg                                  >  2:1789086/1‑140 (MQ=255)
                                                                                                             cgcgcgcACGTTCACCCTCACCCTAACCCTCACCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGACTATTGCGgaga                               <  2:4711273/139‑1 (MQ=255)
                                                                                                             aGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGgaga                               <  1:8731973/140‑1 (MQ=255)
                                                                                                             aGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGgaga                               <  1:1521461/140‑1 (MQ=255)
                                                                                                                   cACGTTCACCCTCACCCTAACCCTCTCCCTCCAGGGAGAGGGGACCGCTCGAGCACAAACTTTGAGAGATATCTTCGTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc                         <  2:7003069/140‑1 (MQ=255)
                                                                                                                   cACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc                         <  2:1734906/140‑1 (MQ=255)
                                                                                                                   cACGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAACTTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc                         <  2:10202278/140‑1 (MQ=255)
                                                                                                                    aCGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCa                        <  1:908349/140‑1 (MQ=255)
                                                                                                                                    tAACGCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACcg        <  2:8516210/140‑1 (MQ=255)
                                                                                                                                    tAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACcg        <  1:2455150/140‑1 (MQ=255)
                                                                                                                                      aaccTCTCCCTCAAGGGAGAGGGGACCGATCGTGCACAAATTTTGAGAGATATCTTATTCTGTCTTGTAACAGAAGAACAGAAAATCTGGCTTTTGCGACTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACcgcg      >  2:656198/3‑140 (MQ=255)
                                                                                                                                      aCCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTgagag                                                                                                 <  1:5271765/49‑1 (MQ=255)
                                                                                                                                      aCCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATCTCTTCTTCTGTCTTGTAACAGAAGACCAGAAAATCGGGCTTTTGCGCCTGAAGATTGCGGAGAAAAAGCATGGCCGGGACTGACcgcg      >  2:2758275/1‑140 (MQ=255)
                                                                                                                                      aCCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGTAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGTCcgcg      >  1:11011363/1‑140 (MQ=255)
                                                                                                                                      aCCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACcgcg      >  2:8428917/1‑140 (MQ=255)
                                                                                                                                      aCCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACcgcg      >  2:7469392/1‑140 (MQ=255)
                                                                                                                                      aCCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACcgcg      >  2:2916065/1‑140 (MQ=255)
                                                                                                                                      aCCCTCTCCCTCAAGGGAGAGAGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGACTATTGCGGAGAAAAAGCATGGCCGGGAATGACcgcg      >  1:3734980/1‑140 (MQ=255)
                                                                                                                                          tctcCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGACGAACAGAAAATCGGGCTTTTGCGCATGAATATTGAGGAGAACAAGCATGGCCGGGCATGACCGCGAGcc  >  2:6539263/1‑140 (MQ=255)
                                                                                                                                          tctcCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc                         <  1:10244372/117‑1 (MQ=255)
                                                                                                                                          tctcCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGcc  >  1:2132150/1‑140 (MQ=255)
                                                                                                                                          tctcCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGcc  >  1:5809034/1‑140 (MQ=255)
                                                                                                                                          tctcCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGcc  >  1:11204902/1‑140 (MQ=255)
                                                                                                                                          |                                                                                                                                           
GTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCC  >  NZ_CP025268/164306‑164583

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑