BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	1,013,596	T→C	pseudogene (539/542 nt) 370 (TAA→TAG)	zapC → ycbX ←	cell division protein ZapC 6‑N‑hydroxylaminopurine resistance protein YcbX

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,013,596	0	T	C	99.8%	1953.7 / NA	562	pseudogene (539/542 nt) 370 (TAA→TAG)	zapC ycbX	cell division protein ZapC 6‑N‑hydroxylaminopurine resistance protein YcbX
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (318/243); minor base G (1/0); total (319/243)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 562 total aligned reads displayed.

GCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GTT‑GGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTTTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCCATCATCGCCCATTGCTGATTTTTTCAGCGGCGTGACTTCGCCTTCTAAAAGCTGAACACGGCAACTTCCACAAATGCCCG  >  NZ_CP025268/1013460‑1013732

gCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTa                                                                                                                                        <  2:6979947/140‑1 (MQ=255)

    cACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAAcgc                                                                                                                                    >  2:2648952/1‑140 (MQ=255)

       tATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGcc                                                                                                                                 <  2:1853087/140‑1 (MQ=255)

       tATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGcc                                                                                                                                 <  1:11344487/140‑1 (MQ=255)

       tATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGcc                                                                                                                                 >  2:6085712/1‑140 (MQ=255)

       tATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGcc                                                                                                                                 <  2:9287723/140‑1 (MQ=255)

       gaTGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCAGGAACGTCAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGcc                                                                                                                                 <  1:7010123/139‑1 (MQ=255)

            ctgctgGCACAACCCTGCGGTGTTATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACTACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACtt                                                                                                                            <  2:9065193/140‑1 (MQ=255)

              gctgGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCTATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTaa                                                                                                                          >  2:10064063/1‑140 (MQ=255)

              gctgGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTaa                                                                                                                          >  1:4350869/1‑140 (MQ=255)

               ctgGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAg                                                                                                                         >  1:10162689/1‑140 (MQ=255)

               ctgGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAg                                                                                                                         >  2:3496892/1‑140 (MQ=255)

               ctgGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAg                                                                                                                         >  2:4813535/1‑140 (MQ=255)

                 ggCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTg                                                                                                                       >  2:8745559/1‑140 (MQ=255)

                 ggCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTg                                                                                                                       >  2:2926596/1‑140 (MQ=255)

                 ggCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTg                                                                                                                       <  2:6262880/140‑1 (MQ=255)

                 ggCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTg                                                                                                                       >  1:8374421/1‑140 (MQ=255)

                 ggCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAAAGACAGGCTGATCCCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTg                                                                                                                       >  2:7469462/1‑140 (MQ=255)

                   cacaACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCa                                                                                                                     <  2:4119069/140‑1 (MQ=255)

                   cacaACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCa                                                                                                                     <  2:5708726/140‑1 (MQ=255)

                   cacaACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCa                                                                                                                     >  1:6608966/1‑140 (MQ=255)

                   cacaACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCa                                                                                                                     >  1:4484017/1‑140 (MQ=255)

                     caACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGt                                                                                                                   <  1:7189068/140‑1 (MQ=255)

                     caACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGt                                                                                                                   <  2:11314347/140‑1 (MQ=255)

                     caACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGt                                                                                                                   <  1:8804320/140‑1 (MQ=255)

                     caACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGt                                                                                                                   <  2:7913695/140‑1 (MQ=255)

                        cccTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCtt                                                                                                                <  1:1468031/140‑1 (MQ=255)

                        cccTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCtt                                                                                                                <  2:8972051/140‑1 (MQ=255)

                        cccTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCtt                                                                                                                <  1:305168/140‑1 (MQ=255)

                        cccTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCtt                                                                                                                >  1:7598143/1‑140 (MQ=255)

                           tGCGTTGTTATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGACACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCgg                                                                                                             >  2:9620164/1‑140 (MQ=255)

                            gCGTTGTTATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGt                                                                                                            >  2:5018146/1‑140 (MQ=255)

                             cGTTGTTATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTa                                                                                                           >  1:5639992/1‑140 (MQ=255)

                              gttgttATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGCCAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTac                                                                                                          <  2:4684565/140‑1 (MQ=255)

                               ttgttATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTaca                                                                                                         <  2:149923/140‑1 (MQ=255)

                                  ttATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAg                                                                                                      >  2:5440479/1‑140 (MQ=255)

                                  ttATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAg                                                                                                      <  1:4837883/140‑1 (MQ=255)

                                  ttATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAg                                                                                                      >  2:3136971/1‑140 (MQ=255)

                                  ttATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCGTCGGTACACAg                                                                                                      >  2:5182926/1‑140 (MQ=255)

                                  ttATTGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCCTCAGCCTCGAACAGGCAGTCTATCGCGCCAACTTAAGTGCAGTCTTCGGTACACAg                                                                                                      >  2:2804452/1‑140 (MQ=255)

                                     ttGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTa                                                                                                   <  1:307141/140‑1 (MQ=255)

                                     ttGCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTa                                                                                                   <  2:4495995/140‑1 (MQ=255)

                                       gCGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTCATGTTGACAGCTTCAGCCTCGAACAGGCAGGCTAACGCGCCAACTTAAGTGCAGTCTGCGGTACACAGCTACa                                                                                                 >  1:3977034/1‑140 (MQ=255)

                                        cGGGTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAg                                                                                                >  1:2000355/1‑140 (MQ=255)

                                          ggTCGCGCGATGCAGGTG‑GGCGCCGGCAGTAAGATCGTGGCCGACAGGCTGAAACCGCAGGGGAGTGGTGACAGCGTCTGCCGCGTACTGGCTGTCTCACGCGCCCTCTTTAGTGCCGTCTTCGGTACACAGCGTCAGct                                                                                              >  2:980420/1‑139 (MQ=255)

                                          ggTCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTa                                                                                                           >  2:5121097/1‑127 (MQ=255)

                                           gTCGCGCGATGCA‑GTTGGGCGACGCCATNAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCaa                                                                                             <  1:6275835/140‑1 (MQ=255)

                                            tCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCaaa                                                                                            >  2:2141144/1‑140 (MQ=255)

                                            tCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCaaa                                                                                            >  1:8987665/1‑140 (MQ=255)

                                            tCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCaaa                                                                                            >  1:1681568/1‑140 (MQ=255)

                                            tCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCaaa                                                                                            >  1:2624161/1‑140 (MQ=255)

                                            tCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCaaa                                                                                            >  2:775559/1‑140 (MQ=255)

                                            tCGCGCGATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCaaa                                                                                            >  1:4665966/1‑140 (MQ=255)

                                              gcgcgATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACCGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGa                                                                                          <  1:3851430/140‑1 (MQ=255)

                                               cgcgATGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGTTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGaa                                                                                         >  1:8073730/1‑140 (MQ=255)

                                                    tGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAATGAATGGTg                                                                                    >  2:10443046/1‑140 (MQ=255)

                                                    tGCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTg                                                                                    <  1:11594237/140‑1 (MQ=255)

                                                    tGCA‑GTTGGGCGAAGACATTTATTTCATTTACGACAGGCTGATACCGCAGTTTAATGTTGACAGATTCAGCCTCTAACAGGCATTCTATCGCGCCAAATTAAGTTCTGTCTTCGGTACACAGCTACAGAAATGATTGGTg                                                                                    <  2:1941498/140‑1 (MQ=255)

                                                     gCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGc                                                                                   <  2:3730952/140‑1 (MQ=255)

                                                     gCA‑GTTGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGc                                                                                   <  1:5124122/140‑1 (MQ=255)

                                                        agttgggCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCca                                                                                 <  1:11011533/135‑1 (MQ=255)

                                                            gggCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCcatcat                                                                             >  1:7864418/2‑140 (MQ=255)

                                                               cGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCCATCATCGc                                                                          >  2:11604998/1‑140 (MQ=255)

                                                               cGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCCATCATCGc                                                                          >  1:5809963/1‑140 (MQ=255)

                                                                gACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCCATCATCGcc                                                                         <  1:10752882/140‑1 (MQ=255)

                                                                    ccATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCCATCATCGCCCAtt                                                                     >  1:10354886/1‑140 (MQ=255)

                                                                    ccATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCCATCATCGCCCAtt                                                                     >  1:3776456/1‑140 (MQ=255)

                                                                      aTTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCCATCATCGCCCATTGc                                                                   >  1:9759709/1‑140 (MQ=255)

                                                                            aTCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCCATCATCGCCCATTGCTGAttt                                                             >  2:8458408/1‑140 (MQ=255)

                                                                               aTGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCCATCATCGCCCATTGCTGAtttttt                                                          >  1:4397252/1‑140 (MQ=255)

                                                                               aTGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCCATCATCGCCCATTGCTGAtttttt                                                          >  1:6104656/1‑140 (MQ=255)

                                                                                      aCAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCCATCATCGCCCATTGCTGATTTTTTCAgcggc                                                   <  1:2862115/140‑1 (MQ=255)

                                                                                      aCAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCCATCATCGCCCATTGCTGATTTTTTCAgcggc                                                   >  1:7365777/1‑140 (MQ=255)

                                                                                         ggCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCCATCATCGCCCATTGCTGATTTTTTCAGCGGCGTg                                                >  1:8528365/1‑140 (MQ=255)

                                                                                                aCCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCCATCATCGCCCATTGCTGATTTTTTCAGCGGCGTGACTTCGc                                         <  1:10566065/140‑1 (MQ=255)

                                                                                                  cGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCCATCATCGCCCATTGCTGATTTTTTCAGCGGCGTGACTTCGCCt                                       >  2:3389494/1‑140 (MQ=255)

                                                                                                    ctggTTAATGGTGACAGCTTCAGCCTCGAACAGGCTGTCTAACGCGCCAACTGAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCCAGCATCGCCCCTTGCTGATTTTTTCAGCGGCGTGACTTCGCCTTc                                     >  2:8579385/3‑140 (MQ=255)

                                                                                                    cAGGTTAATGTTGACAGCTTCAGCCTGGATCAGGCAGTCTAACGGGCCGACTTATGGGCAGTCTGCGGAACTCAGCTCCAGCAAAGAAGGGTGCGATCATCGCCGCTTGGTGAGTTTTGGAGCGGCGTGAGTTCGCCTTc                                     >  2:6787656/1‑140 (MQ=255)

                                                                                                    cAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCCATCATCGCCCATTGCTGATTTTTTCAGCGGCGTGACTTCGCCTTc                                     >  2:10761540/1‑140 (MQ=255)

                                                                                                    cAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCCATCATCGCCCATTGCTGATTTTTTCAGCGGCGTGACTTCGCCTTc                                     >  1:7110923/1‑140 (MQ=255)

                                                                                                    cAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCCATCATCGCCCATTGCTGATTTTTTCAGCGGCGTGACTTCGCCTTc                                     >  2:6581732/1‑140 (MQ=255)

                                                                                                     aGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCCATCATCGCCCATTGCTGATTTTTTCAGCGGCGTGACTTCGCCTTCt                                    <  2:4018039/140‑1 (MQ=255)

                                                                                                     aGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGACATCATCGCCCATTGCTGATTTTTTCAGCGGCGTGACTTCGCCTTCt                                    <  1:7260929/140‑1 (MQ=255)

                                                                                                          aaTGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCCATCATCGCCCATTGCTGATTTTTTCAGCGGCGTGACTTCGCCTTCTAAAAg                               >  2:1648733/1‑140 (MQ=255)

                                                                                                          aaTGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCCATCATCGCCCATTGCTGATTTTTTCAGCGGCGTGACTTCGCCTTCTAAAAg                               >  2:11008177/1‑140 (MQ=255)

                                                                                                             gTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCCATCATCGCCCATTGCTGATTTTTTCAGCGGCGTGACTTCGCCTTCTAAAAGCTg                            <  2:5985561/140‑1 (MQ=255)

                                                                                                             gTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCCATCATCGCCCATTGCTGATTTTTTCAGCGGCGTGACTTCGCCTTCTAAAAGCTg                            <  1:3587410/140‑1 (MQ=255)

                                                                                                              ttGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCCATCATCGCCCATTGCTGATTTTTTCAGCGGCGTGACTTCGCCTTCTAAAAGCTGa                           <  2:5311926/140‑1 (MQ=255)

                                                                                                                 aCAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCCATCATCGCCCAGTGCTGATTTTTTCAGCGGCGTGACTTCGCCTTCTAAAAGCTGAaca                        >  1:941216/1‑140 (MQ=255)

                                                                                                                 aCAGCGTCCGCCTCGAACAGGCAGTCGACCGCGCCAACTTAAGTGCAGTCTTCGGTCCACAGCTACAGCAAAGACTGGTGCCAACATCGCCCATTGCAGATTTTTTCAGCGGCGTGACTTCGCCTTCTAAAAGCTGcaca                        <  2:11433739/140‑1 (MQ=255)

                                                                                                                        cAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCCATCATCGCCCATTGCTGATTTTTTCAGCGGCGTGACTTCGCCTTCTAAAAGCTGAACACGGCAAc                 <  2:7182013/140‑1 (MQ=255)

                                                                                                                        cAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCCATCATCGCCCATTGCTGATTTTTTCAGCGGCGTGACGTCGCCTTCTAAAAGCTGAACACGGCAAc                 >  2:1032870/1‑140 (MQ=255)

                                                                                                                          gCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCCATCATCGCCCATTGCTGATTTTTTCAGCGGCGTGACTTCGCCTTCTAAAAGCTGAACACGGCAACtt               >  1:6428771/1‑140 (MQ=255)

                                                                                                                            cTCGATCAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGACTTGTGCCATAATAGCCCATTGCTGATTTTTTCAGCGGCGTGACTTCGCCTTCTAAAAGCTGAACACGGCAACTTcc             <  2:817904/140‑1 (MQ=255)

                                                                                                                             tCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCCATCATCGCCCATTGCTGATTTTTTCAGCGGCGTGACTTCGCCTTCTAAAAGCTGAACACGGCAACTTCca            >  1:6771315/1‑140 (MQ=255)

                                                                                                                                aaCAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCCATCATCGCCCATTGCTGATTTTTTCAGCGGCGTGACTTCGCCTTCTAAAAGCTGAACACGGCAACTTCCACaa         >  1:2432233/1‑140 (MQ=255)

                                                                                                                                aaCAGGCAGTCTAACGCGCCAACGTAAGTGCAGTCTTCGGTACACAGCTACAGCACAGAATGGTGCCCTCCTCGCCCATTGCTGATTTTTGCCGCGGCGTGACTTCGCCTTCTACAAGCTGAACTCGGCCACTTCCACaa         >  2:1377043/1‑140 (MQ=255)

                                                                                                                                     gCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCCATCATCGCCCATTGCTGATTTTTTCAGCGGCGTGACTTCGCCTTCTAAAAGCTGAACACGGCAACTTCCACAAATGcc    >  1:9571296/1‑140 (MQ=255)

                                                                                                                                     gCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCCATCATCGCCCATTGCTGATTTTTTCAGCGGCGTGACTTCGCCTTCTAAAAGCTGAACACGGCAACTTCCACAAATGcc    >  1:3324360/1‑140 (MQ=255)

                                                                                                                                       aGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCCATCATCGCCCATTGCTGATTTTTTCAGCGGCGTGACTTCGCCTTCTAAAAGCTGAACACGGCAACTTCCACAAATGCCcg  <  1:425921/140‑1 (MQ=255)

GCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GTT‑GGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTTTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCCATCATCGCCCATTGCTGATTTTTTCAGCGGCGTGACTTCGCCTTCTAAAAGCTGAACACGGCAACTTCCACAAATGCCCG  >  NZ_CP025268/1013460‑1013732

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`