BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	1,293,001	A→G	noncoding (36/132 nt)	CXP41_RS06835 ←	RtT sRNA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,293,001	0	A	G	98.5%	980.5 / NA	344	noncoding (36/132 nt)	CXP41_RS06835	RtT sRNA
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (125/213); minor base T (5/0); total (131/213)
Fisher's exact test for biased strand distribution p-value = 7.45e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 344 total aligned reads displayed.

TGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGT  >  NZ_CP025268/1292866‑1293134

tGCGGATTCGTTTGAGTATTCCGGGGCTTTTGACAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                                                   <  1:947966/140‑1 (MQ=255)

tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                                                   <  1:3883575/140‑1 (MQ=255)

tGCGGATTCGTTTGAGAATTCCGGGGCTGATGCAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                                                   <  2:9649587/140‑1 (MQ=14)

agCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                                                   <  1:142938/139‑1 (MQ=255)

 gctgATTCGTTTGAGAATTCGGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGaa                                                                                                                                  <  1:10093434/137‑1 (MQ=255)

 gCGGATTCGTTTGAGAATTCGGGGTCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGaa                                                                                                                                  <  1:8201227/140‑1 (MQ=255)

 gCGGATTCGTTTGAGAATTCCGGGTCTTTTGTAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGaa                                                                                                                                  <  1:5930330/140‑1 (MQ=255)

 gCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGaa                                                                                                                                  <  2:3716774/140‑1 (MQ=255)

 gCGGATTCGTTTGAGAATTCCGGGCCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGaa                                                                                                                                  <  1:5714580/140‑1 (MQ=11)

  cGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGTGGCAACGATCTCTCGCTTACGCACGAATCGAACCTTAGTCGAAg                                                                                                                                 >  1:5159263/1‑140 (MQ=14)

    gATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCt                                                                                                                               <  1:1914813/140‑1 (MQ=255)

      ttCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTtc                                                                                                                             <  2:5762932/140‑1 (MQ=255)

           ttGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATc                                                                                                                        <  2:4980400/140‑1 (MQ=255)

           atGAGAATTAGGGGGCTTTTGTAAGTGATGGTGGTGGGGGATGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATc                                                                                                                        <  1:10601155/139‑1 (MQ=11)

             gagaATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCCTGCCGAAACTAATTAGAAGCTTCGCAAcca                                                                                                                      >  1:6077145/1‑139 (MQ=14)

               gaATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTc                                                                                                                    <  2:1393328/140‑1 (MQ=255)

               gaATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTc                                                                                                                    <  1:6427044/140‑1 (MQ=255)

                    cggtggCTTTAGTAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGc                                                                                                               <  2:11582699/136‑1 (MQ=255)

                    ccGGGGCTTTTGACAGGGATGGTGGTGGGGGAAGGATTACTCCGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGc                                                                                                               <  1:9066135/140‑1 (MQ=255)

                    ccGGGGCTTTTGAACGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGc                                                                                                               <  2:537416/140‑1 (MQ=255)

                    ccGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGc                                                                                                               <  2:1248916/140‑1 (MQ=37)

                    ccGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGc                                                                                                               <  1:7702123/140‑1 (MQ=37)

                      ggtttttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCAt                                                                                                             <  2:9260426/135‑1 (MQ=12)

                         gCTTTTGTCAGTGATGGTGGTGGGCGAAGTTTTTCATATGGCAGAGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                          <  1:1123323/140‑1 (MQ=11)

                         gCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                          <  1:89727/140‑1 (MQ=18)

                         gCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                          <  1:8364096/140‑1 (MQ=18)

                           ttttGTAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                        <  2:8795657/140‑1 (MQ=17)

                           ttttGAAAGGGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                        <  2:432271/140‑1 (MQ=17)

                             ttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGa                                                                                                      <  1:310717/140‑1 (MQ=17)

                                taaGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAata                                                                                                   <  1:9297870/139‑1 (MQ=17)

                                     gATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCAGCGGCAACGCGCTCTCGCTGACGCACGAGCCGTACCTTATTAGAATCGTCTAATCCCTCCCCGCCGTGGCCGAataaatta                                                                                              >  1:1031447/1‑135 (MQ=11)

                                                    aGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAAACCCCACTCGCGGGCGCACGAGTCGCACCGTGGTCGAAGCTTCTAAAACATACCCGCCAGGGCAGAATATGTAAATGGGGAttggttgg                                                                               >  1:2495744/1‑140 (MQ=2)

                                                      gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGa                                                                             <  1:2330548/140‑1 (MQ=255)

                                                      gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCGTGGTCGAAGCTTCTCAGCCTTCCCCGCATGGGCCGAAGTTTGAATTGCGGAGGCGTTGGGa                                                                             >  2:10636977/1‑140 (MQ=11)

                                                       aTTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCGTGGTCGAAGGTTCTCATCCTTCCCCGCCGTGGCAGAATATTGAATTTCGGATTGGTTGGGac                                                                            >  1:10458486/1‑139 (MQ=11)

                                                       aTTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCGTGGTCGAAGCTTCTCATCCATCCCCCCATGGGCAGAATATTTAATTTCGGATTCGGTGGGaa                                                                            >  1:9155952/1‑140 (MQ=11)

                                                              aGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCACCGCTCTCTCGCTGGCGCTCGAGTCGACCCGTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCCGAATATTTAATAGCGGATTCGTGGGGAAGTTCAgg                                                                     >  2:8209710/1‑140 (MQ=14)

                                                              aGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAgg                                                                     <  1:4164778/140‑1 (MQ=255)

                                                                cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGATTCGAACCGTGGTCGAAGCTTCTCAACCGTCCCCGCAGGGGCCGAAGATTTAAATTCGGAGGCGTTGGGAAGTTCAGGGa                                                                   >  1:4980599/1‑140 (MQ=14)

                                                                cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCAAACTTCCCCGCCTGGGCAGAATATTTAATTGCGGAGTAGTTGGGTAGTTAAGGGa                                                                   >  1:7394326/1‑140 (MQ=11)

                                                                cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAAACCACTCACGCTGGCGCGCGAGTAGAACCTTGGTCGAAGCTTCTCATACTTACCCCCAAGGGCAGAAATTTTAATTGCGGATTGGTTGGGTAGTTCAGGGa                                                                   >  1:9657401/1‑140 (MQ=2)

                                                                 gcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGCATATTTAATGGCGGATTCGTTGGGAAGTTCAGGGAc                                                                  >  2:7813165/1‑140 (MQ=14)

                                                                  cTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCCTGGGCAGAATATTTAATTGCGGATGCGTTGGGAAGTTAAGGGACt                                                                 >  2:10159052/1‑140 (MQ=14)

                                                                   tGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATAGTTTATTGCGGATTCGGTGGGGAGTTCAGGGACtt                                                                >  2:4729373/1‑140 (MQ=11)

                                                                     cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTGTCTCGCTGGCGCTCGAGTGGAACCTTGGTCGAAGCTTCTCATACTTACCCGCATGGGCAGAATATTTAATTGCGGAGTCGTTGGGAAGGTGAGGGACtttt                                                              >  1:10741617/1‑140 (MQ=14)

                                                                     cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCACGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGGCtttt                                                              >  1:8600046/1‑140 (MQ=14)

                                                                     cgcgcTGCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGCGTCGAACCGTGGTCGAAGCTTCTCATCCATACCCGCAGGGGCAGAATTTTTATTTGCGGATGCGGTGGGAAGTTCCGGGACattt                                                              >  2:9344774/1‑140 (MQ=11)

                                                                        gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACGTAGGTCGATGCTTCTCATAGTTCCCCGCATGGGCATTATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGaa                                                           <  1:2890947/140‑1 (MQ=14)

                                                                        gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGaa                                                           <  2:8155597/140‑1 (MQ=255)

                                                                          ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGGGTCGAACCTGGGTCGAAGCGTCTCATCCGTCCCCGCATGGGGAGAATTTTGAATTGCGGATTGGGGGGGAAGTTGAGGGACTTTTgtagg                                                         >  2:1676408/1‑136 (MQ=11)

                                                                          ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCCAGTCGCACCGTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCCGTCTAGTTTATTGCGGATTCGTTGGGGAGTTCAGGGTCTTGTGAAAg                                                         >  2:6438203/1‑140 (MQ=11)

                                                                            cGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTAGCTGGCGCTCGAGTCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGTAAGTTCAGGGACTTTTGAAAGTg                                                       <  1:6966424/140‑1 (MQ=11)

                                                                             gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGA                                                      <  2:2061903‑M1/140‑1 (MQ=255)

                                                                              cccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGAT                                                     <  1:9816329‑M1/140‑1 (MQ=255)

                                                                                cTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGTAGTTCAGGGACTTTTGAAAGTGATGG                                                   <  1:11487752‑M1/140‑1 (MQ=255)

                                                                                 ttCGGGTCGTTGCCTGCGTCAACGCTCTCTCGCTGTCGCTCGAGACGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGT                                                  <  1:8678476‑M1/140‑1 (MQ=255)

                                                                                 ttCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCTAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGT                                                  <  1:1143431‑M1/140‑1 (MQ=255)

                                                                                 ttCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGT                                                  <  1:7610384‑M1/140‑1 (MQ=255)

                                                                                  tCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCCGAATATTTAATTGCGGATTCGGTGGGGAGTTCAGGGACTTTTGAAAGTGAGGGTG                                                 >  2:5725552‑M1/1‑140 (MQ=255)

                                                                                   cGGTTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTTGTCGAAGCTTCTCATCCTTCGCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGTGACTTTTGAAAGTGATGGTGG                                                <  2:6721330‑M1/140‑1 (MQ=255)

                                                                                   cGGGTCGTTGCCAGCGGCAACGCTATCTCGCTTGCGCTCGAGTCGAACCTTGGTCGATGCTTCTCATCATTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGG                                                <  2:7974361‑M1/140‑1 (MQ=255)

                                                                                      ggcGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGGGTCGAACCTTGGGCGAAGCGTCTCATCCTTCCCCGCCTGGGCAGAATATTTAAGTGCGGCTTCGGGGGGGCGGTCCGGGACTTGTGAAAGTGAgggtggggg                                             >  1:11204231/3‑140 (MQ=2)

                                                                                      gTCGTTGCCTGCGGCAACGCTCTCACGCTGGCGCTCAAGTCGACCCGTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGACTATTTTATTGCGGATTCGTTGGGGAGTTCAGGGGCGTTTGAAAGTGATGGTGGTGG                                             >  2:6052044‑M1/1‑140 (MQ=255)

                                                                                         gTTGCCTGCGGCAACGCTCTCTCGCTTGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCAACCTTCCCCGCATGGGCAGAATATTTAATTTCGGATTCGGTGGGAAGTTCAGGGCCTTTTGAAAGTGTTGGTGGTggggg                                          >  1:730552/1‑140 (MQ=11)

                                                                                         gTTGCCTGCGGCAAAGCTCTCTCGCTGGCGCTCAAGTCGAACGTTGGTCGAAGCTTCACATCCTTACCCGGATGGGCAGAATATTTAATTTGTGTGTCGGTGGGAAGTTCAGGGCGTTATGAAAGTGTTGGTGGTggggg                                          >  2:219318/1‑140 (MQ=2)

                                                                                          ttGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGA                                         <  2:7421729‑M1/140‑1 (MQ=255)

                                                                                          ttGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGA                                         <  1:4877785‑M1/140‑1 (MQ=255)

                                                                                          ttGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGA                                         <  2:3462944‑M1/140‑1 (MQ=255)

                                                                                          ttGCCTGCGGAATCGCTCTCTCGCTGGCTCTCGAGTCTTCTGTTTGTCTATTGGTCTCTTAGTTCAGCGTATGGGCATTATATTTTATTGCGGATTCGTTTGGAAGTTCAGGGTCTTTTGAAAGTGATGGTGGTGGGGGa                                         <  1:5367166/140‑1 (MQ=2)

                                                                                                 cGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAAACTTGGTCGAAGCTTCAAATCCATCCCCGCATGGGCAGAATATTTAATTGAGGATTAGTTGGGAAGTTAAGGGACTTTTGAAAGTGATGGTGGTGGGGGTAGGAttc                                  >  1:2857833/1‑139 (MQ=14)

                                                                                                    cAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCNCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaa                               >  1:6309687‑M1/1‑136 (MQ=255)

                                                                                                       cGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAACGTGATGGTGGTGGGGGAAGGATTcgaacct                            >  2:10550575‑M1/1‑133 (MQ=255)

                                                                                                             ctcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaag                      <  2:11432832‑M1/140‑14 (MQ=255)

                                                                                                                gCTGGCGCTCGAGTCGAACCGTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATGCGTTGGGACGTTCAGGGACTGGTGAAAGTGATGGTGGTGGGGGACGGATTcgaaccttcgaagtcg                   >  2:2374859‑M1/1‑124 (MQ=255)

                                                                                                                  tggcgctCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaa                               >  1:4429837‑M1/4‑122 (MQ=255)

                                                                                                                   ggcgcTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTG                                                 <  2:6815129‑M1/105‑1 (MQ=255)

                                                                                                                    gcgCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatga               >  2:9704426‑M1/2‑120 (MQ=255)

                                                                                                                    gcgCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaacttctaagacgatga               >  2:11014255‑M1/2‑120 (MQ=255)

                                                                                                                     cGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgac              <  1:7098116‑M1/140‑22 (MQ=255)

                                                                                                                      gCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGAGGATTCGTTGGGAAGTTCAGGGACTTATGAAAGTGATGGTGGTGGGGGAAGGATTctaaaattcgaagtcgatgtcg             >  2:11227868‑M1/1‑118 (MQ=255)

                                                                                                                      gCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGTTTGGAAGTTCAGGGCCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagacgatgacg             >  2:3208427‑M1/1‑118 (MQ=255)

                                                                                                                      gCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacg             >  1:7917760‑M1/1‑118 (MQ=255)

                                                                                                                      gCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATG                                                    <  1:8818294‑M1/101‑1 (MQ=255)

                                                                                                                       cTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgg            <  1:1595168‑M1/140‑24 (MQ=255)

                                                                                                                       cTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgg            <  1:8026067‑M1/140‑24 (MQ=255)

                                                                                                                       cTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgg            <  1:8505871‑M1/140‑24 (MQ=255)

                                                                                                                       cTCCAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGCAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgg            <  1:11319128‑M1/140‑24 (MQ=255)

                                                                                                                         cGAGTCGCACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTTATGGCGGATTCGTTGGGCAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggca          <  2:4017477‑M1/140‑26 (MQ=255)

                                                                                                                         cGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGTAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggca          <  2:6862481‑M1/140‑26 (MQ=255)

                                                                                                                         cGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggca          <  1:4563709‑M1/140‑26 (MQ=255)

                                                                                                                         cGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggca          <  1:10962628‑M1/140‑26 (MQ=255)

                                                                                                                         cGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggca          <  2:7148130‑M1/140‑26 (MQ=255)

                                                                                                                         cGAGCCGAACCTTCGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGTTAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggca          <  1:11133215‑M1/140‑26 (MQ=255)

                                                                                                                            gtcgaACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagat       >  2:8031869‑M1/3‑112 (MQ=255)

                                                                                                                              cGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagattt     >  1:3240865‑M1/1‑110 (MQ=255)

                                                                                                                               gAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagattta    >  2:4585497‑M1/1‑109 (MQ=255)

                                                                                                                                aaCCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGaa                                                                            <  2:5024440/67‑1 (MQ=255)

                                                                                                                                aaCCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGa                                                                             <  2:3770024/66‑1 (MQ=255)

                                                                                                                                aaCCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGa                                                                             >  1:3770025/1‑66 (MQ=255)

                                                                                                                                 aCCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaggtcgatgacggcagatttaca  >  2:9124931‑M1/1‑107 (MQ=255)

TGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGT  >  NZ_CP025268/1292866‑1293134

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`