BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	1,293,160	G→A	noncoding (55/132 nt)	CXP41_RS06840 ←	RtT sRNA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,293,160	0	G	A	85.3%	367.9 / 13.7	200	noncoding (55/132 nt)	CXP41_RS06840	RtT sRNA
Reads supporting (aligned to +/- strand): ref base G (18/3); major base A (113/38); minor base T (22/4); total (155/45)
Fisher's exact test for biased strand distribution p-value = 3.29e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 201 total aligned reads displayed.

GTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGA  >  NZ_CP025268/1293061‑1293299

gTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCGTCGGCAACGCGCTATCGCTGGCGCTCGATGAGAACCATGTTCGAACCGTCTAAGCCTAccc                                                                                                     >  1:153588/1‑140 (MQ=11)

                                        tACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCGCGCTGACGCTCGAGACGAACCTTAGTCGAAGGTTCTCAACCTTCCCCGCTGGTGGAGGATATTAGATTGCGGGTGCGCTGGAGAGt                                                             >  1:985487/1‑140 (MQ=11)

                                         aCTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGGCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCCGAATATTTGATTGCGGAATCGTTTgagcata                                                            >  2:5993568/1‑136 (MQ=1)

                                         aCTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCGTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGTGAGtt                                                            >  1:7011601/1‑140 (MQ=255)

                                            cAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAg                                                         <  2:9284336/140‑1 (MQ=18)

                                            cAGCGCGGCGCGCGTCGCCCTGCGGCTCGTTGCCTGCGGCACCGCTCTCTCGCCGACGCTCGAGCCGCACCTAAGACGCAGCGTCTCATCCTTCCCCGCATGGGCAGACTATTTGATTGCGGAGGCGCTTGAGAGTTCAg                                                         <  2:6705854/140‑1 (MQ=11)

                                              gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                       <  1:6496884/140‑1 (MQ=21)

                                              gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                       <  1:9193532/140‑1 (MQ=21)

                                              gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCAGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                       <  1:6593144/140‑1 (MQ=255)

                                               cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGACGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGGTTGAGATTTCAgggc                                                      >  2:8332126/1‑139 (MQ=11)

                                               cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCCTGGGCAGAATATTTGATTGCGGATTCGCTTGTGAGTTCAGGGa                                                      >  2:10656116/1‑140 (MQ=255)

                                               cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGa                                                      <  2:4464038/140‑1 (MQ=25)

                                               cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGa                                                      >  2:10240933/1‑140 (MQ=25)

                                               cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTGGTGAGTTCAGGGa                                                      >  2:4867622/1‑140 (MQ=255)

                                               cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCATCCCCGCATGGGGAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGa                                                      >  2:3243186/1‑140 (MQ=255)

                                               cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCATGGTCGAAGATTCACAACCGTCCCCCCAGGGGCAGGCTAATTGATTGCGGATTCGCTTGAGAGGTAAgggc                                                      >  1:6902502/1‑139 (MQ=11)

                                               cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCGGCGGCAACGCTCTCTCGCTGACGCTCGTGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAGATTTGATTGCGGAGTCGCGGGAGAGTGCAGGGa                                                      >  2:11054705/1‑140 (MQ=11)

                                               cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCGGCGGCAACGCTCTCTCCCTGGCGCTCAATTCGAACCGTTGTGGAAGCATCTCATACTTCCCCGCCTGGGCAGTATATTTTGTTGCGGGTTCGGTTGGGAGTTCAgggg                                                      >  1:4485328/1‑139 (MQ=2)

                                                gcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCGGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCCGAATATTTGATTGCGGATTCGCTTGGGAGTTCAGGGAc                                                     >  2:2978724/1‑140 (MQ=11)

                                                    cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCTCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACtttt                                                 <  2:9490775/140‑1 (MQ=255)

                                                    cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCGCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCCTGGGCGGAATATTTTTTTGGGGATTCGGGTGGGAGTTGAGGGGCttgg                                                 >  2:6349539/1‑138 (MQ=11)

                                                    cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGTAGCTTCTCATCCTTACCCGCATGGGCAGAATATTTGGTTTGGGATTCGCTTTAGAGTTCAGGGaatgtt                                                 >  1:11522482/1‑135 (MQ=11)

                                                    cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACtttt                                                 <  1:9379385/140‑1 (MQ=255)

                                                    cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCACTCGCTGACGCTCGAGCCGAAACTTAGTCGAATCATGACATCCTTACCCGCATGGGCCGAATAATTTATTGCGGATTCGGTTGTGAGTTGAGGGGCtttt                                                 >  1:3334881/1‑140 (MQ=11)

                                                    cgcgcTTCGCCCTTCGGGTCGTTGCCGGCGGCAACGCTCTCTCGCTGGCGCTCACGTCGAACCTTGGTCGAAGCTTCTCATACTTACCCGCATGGGCAGAATATTTGATTGCGGGTTCGGGTGGGAGTTCAGGGGCtttt                                                 >  1:7544134/1‑140 (MQ=11)

                                                     gcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTg                                                <  1:10552510/140‑1 (MQ=255)

                                                       gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaa                                              <  1:1851143/140‑1 (MQ=255)

                                                       gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaa                                              <  2:5858867/140‑1 (MQ=255)

                                                       gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaa                                              <  1:9650905/140‑1 (MQ=255)

                                                        cTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaaa                                             <  1:10123429/140‑1 (MQ=255)

                                                         ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTCGGCGAAGCTTCTCATCCTTCCCCGCATGGGCCGAATATTTGATTGCGGATTCGGTTGGAAGTTAAGGGACTTTTGAAAg                                            >  2:2845429/1‑140 (MQ=11)

                                                           cGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTg                                          >  1:8718166‑M2/1‑139 (MQ=255)

                                                            gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTGGCTGACGCTAGAGCCGAACCTTAGTCTCAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTga                                         >  2:3048914‑M2/1‑138 (MQ=255)

                                                            gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCTAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTga                                         >  1:10935288‑M2/1‑138 (MQ=255)

                                                            gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGTCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTga                                         >  2:2568001‑M2/1‑138 (MQ=255)

                                                            gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTga                                         >  2:6430009‑M2/1‑138 (MQ=255)

                                                            gCCCTTCGGGTCGTAGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTga                                         >  1:9651851‑M2/1‑138 (MQ=255)

                                                            gCCCTTCGGGTCGGTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCGTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTga                                         >  2:897161‑M2/1‑138 (MQ=255)

                                                             cccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgat                                        >  2:554239‑M2/1‑137 (MQ=255)

                                                             cccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGACGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgat                                        >  1:3034270‑M2/1‑137 (MQ=255)

                                                             cccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgat                                        >  1:4811677‑M2/1‑137 (MQ=255)

                                                             cccTTCGGGTCGTTGCCGGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgat                                        >  1:11027710‑M2/1‑137 (MQ=255)

                                                             cccTTCGGGTCGTGGCCTGCGGCACCGCTCTCGCGCTGACGCGCGCGCCGAACCTTAGTCGAAGCTTCTCTTCCTTCCCCGCATGGGCAGAATATTTGCTTGCGGTGTCGCTTGATAGTTCAGGGACTATTGAAAGTGAt                                        <  2:11543187/140‑1 (MQ=11)

                                                              ccTTCGGGTCGTTGCCTGCGGCACCGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGTCTTTTGAAAGTgatg                                       >  1:8794070‑M2/1‑136 (MQ=255)

                                                              ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatg                                       >  2:10703714‑M2/1‑136 (MQ=255)

                                                              ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatg                                       >  1:5225917‑M2/1‑136 (MQ=255)

                                                               cTTCGGGTCGTTGCCTGCGGCACCGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCGTCTCATCCGTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatgg                                      >  2:10198405‑M2/1‑135 (MQ=255)

                                                               cTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatgg                                      >  1:1651464‑M2/1‑135 (MQ=255)

                                                                gtcGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGTGCAGAATAATTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggt                                     >  2:6883656‑M2/2‑134 (MQ=255)

                                                                 tCGTGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATTTTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtg                                    >  1:4708309‑M2/1‑133 (MQ=255)

                                                                 tCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtg                                    >  1:686253‑M2/1‑133 (MQ=255)

                                                                 tCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGCAGCGTCTCATCCTTCCCCGCAGGGGCAGACTAGTTGATTGCGGATTCGCTGGAGAGTTCAGGGACTTTTGAAAGTgatggtg                                    <  2:5729583‑M2/140‑8 (MQ=255)

                                                                   gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTCGTCGAAGCTTCTCATCCGTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggt                                  >  2:4037226‑M2/1‑131 (MQ=255)

                                                                   gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggt                                  >  2:5253662‑M2/1‑131 (MQ=255)

                                                                   gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggt                                  >  1:9313305‑M2/1‑131 (MQ=255)

                                                                   gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggt                                  >  2:9814459‑M2/1‑131 (MQ=255)

                                                                   gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggt                                  >  1:6589674‑M2/1‑131 (MQ=255)

                                                                   gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggt                                  >  2:5590828‑M2/1‑131 (MQ=255)

                                                                   gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggt                                  >  1:6699611‑M2/1‑131 (MQ=255)

                                                                   gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCGTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggt                                  >  2:781221‑M2/1‑131 (MQ=255)

                                                                     gTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGATTGAGAGTTCAGGGACTTTTGAAAGTgatggtgttgg                                <  2:7374103‑M2/140‑12 (MQ=255)

                                                                       cGTTGCCTGCGGCAACGCTCTCTCGCTGAAGCACGAGCCCAACCTTAGTCGAAGCTTCTAATCCGTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGGTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggggggg                              <  2:1259642‑M2/140‑14 (MQ=255)

                                                                        gtgccctgcgGCAACGCTCTCTCGCTGANGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCCTGGGCAGAATATTTGATTGCGGAGTCGATTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtggggg                             >  1:6291297‑M2/5‑126 (MQ=255)

                                                                        gTTGCCTTCGTCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGAATTTTGAAAGTgatggtggtggggg                             >  1:9890620‑M2/1‑126 (MQ=255)

                                                                        gTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGATCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGTGACTTTTGAAAGTgatggtggtggggg                             >  1:2230781‑M2/1‑126 (MQ=255)

                                                                        gTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGACGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtggggg                             >  1:2646314‑M2/1‑126 (MQ=255)

                                                                        gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtggggg                             >  2:11213783‑M2/1‑126 (MQ=255)

                                                                        gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGAGTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtggggg                             >  2:3466178‑M2/1‑126 (MQ=255)

                                                                        gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCGTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtggggg                             >  1:4108547‑M2/1‑126 (MQ=255)

                                                                         ttGCCGGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCATAGTCGAAGCTTCTCAACCTTCCCCCCCTGGGCAGAATATTTGATTGCGGATTCGCTTGGGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggg                            <  1:6722135‑M2/140‑16 (MQ=255)

                                                                           gCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaag                          >  2:10368288‑M2/1‑123 (MQ=255)

                                                                           gCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaag                          >  1:3748369‑M2/1‑123 (MQ=255)

                                                                           gCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaag                          >  1:4690633‑M2/1‑123 (MQ=255)

                                                                             cTGCGTCAACGCTCTCTCGCTGACGCTCGACCCGAACCTTCGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGCCTAATTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTAGAAAGTgatggtggtgggggaagga                        >  1:2767547‑M2/1‑121 (MQ=255)

                                                                             cTGCGTAAACGCTCTCTCGCTGACGCTCGAGCAGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggttggggaagga                        >  1:9777286‑M2/1‑121 (MQ=255)

                                                                             cTGCGGCAACGCTCTCTCGCTGTCGCTCTAGTCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaagga                        >  1:2611339‑M2/1‑121 (MQ=255)

                                                                             cTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaagga                        >  2:1790752‑M2/1‑121 (MQ=255)

                                                                             cTGCGGCAACGCTCTCTCGCTGGCGCTCTAGTCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaagga                        >  1:4947369‑M2/1‑121 (MQ=255)

                                                                             cTGCGGCAACGCTCTCTCGCTGGCGCTCGAGACGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaagga                        >  1:7693405‑M2/1‑121 (MQ=255)

                                                                             cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaagga                        >  1:2067995‑M2/1‑121 (MQ=255)

                                                                             cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCGTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaagga                        >  2:502280‑M2/1‑121 (MQ=255)

                                                                             cTGCGGCAACGCTCTCGCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATATGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaagga                        >  2:9535232‑M2/1‑121 (MQ=255)

                                                                              tGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAAACTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCCGAATATTTGATTGCGGATTCGGTGGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggat                       <  2:2337828‑M2/140‑21 (MQ=255)

                                                                                  gCAACGCTCTCTCGCTGCCGCTCCAGACGAACCTTTGTCGAAGCTTCTCCTCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGATTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattact                   >  1:7994667‑M2/1‑116 (MQ=255)

                                                                                  gCAACGCTCTCTCGCTGACGCTCTAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattact                   >  2:9203283‑M2/1‑116 (MQ=255)

                                                                                  gCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattact                   >  1:10240934‑M2/1‑116 (MQ=255)

                                                                                    aaCGCTCTCTCGCTGACGCTCGAGCCGAACCTGAGTCGAAGCTTCTCAGCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactca                 >  2:11316214‑M2/1‑114 (MQ=255)

                                                                                     aCGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcag                >  2:5650983‑M2/1‑113 (MQ=255)

                                                                                      cGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGTGTGTTCAGGGACTTTTGAAAGTgatggtggtggggggaggattactcagg               <  1:9156249‑M2/140‑29 (MQ=255)

                                                                                      cGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagc               <  2:4337300‑M2/140‑29 (MQ=255)

                                                                                       gCTCTCTCGCTGACGCTCGAGCCGAACGTTAGTCGACGCTTCTCATCCTTCCCCGCATGGGCATTATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcg              >  1:8167727‑M2/1‑111 (MQ=255)

                                                                                       gCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGCATATTTGATTGCGGAGTCGCGGGAGCGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcg              <  1:5891215‑M2/140‑30 (MQ=255)

                                                                                       gCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcg              >  1:8285230‑M2/1‑111 (MQ=255)

                                                                                       gCACTCTCGCAGACGCTCGACCCGAACCTTTGGCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATTTATGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGCAAGTgatggtggtgggggaaggattactcagcg              >  1:7125882‑M2/1‑111 (MQ=255)

                                                                                          ctctcGCTGACGCTCCAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTATGAAAGTgatggtggtgggggaaggattactcagcgctg           >  1:5665077‑M2/1‑108 (MQ=255)

                                                                                            ctcGCTGGCTCTCGCGGCGAACCTTTGTCGCCGCTTCTGAGCCTTCCGCGCTTTGGCAGATTTTTTTATGGCGGAGTCGTTTGAGTGTTGTTTGACTTTAGCAAGAGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAg         <  1:11325908/140‑1 (MQ=9)

                                                                                            ctcGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcg         >  1:8485220‑M2/1‑106 (MQ=255)

                                                                                             tcGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgc        <  2:1681758‑M2/140‑36 (MQ=255)

                                                                                                 tGGCGCTCAAGTCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaa                                              <  1:5494013/98‑1 (MQ=255)

                                                                                                   gcgcTCGAGTCGAACCTTGGTCGAAGCATCTCATCCTTCCCCGCATGGGCAGAATATTTCATTGGGGATTCGGTGGGAAGTTAAGGGACTTTTGAAAGAGATGGTGGTGGGGGAAGGATTCGATCCTTCGAAGTCGATgt  >  2:9924026/1‑139 (MQ=11)

GTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGA  >  NZ_CP025268/1293061‑1293299

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`