BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	1,293,179	A→G	noncoding (36/132 nt)	CXP41_RS06840 ←	RtT sRNA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,293,179	0	A	G	99.1%	687.5 / NA	230	noncoding (36/132 nt)	CXP41_RS06840	RtT sRNA
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (165/62); minor base T (1/1); total (167/63)
Fisher's exact test for biased strand distribution p-value = 4.75e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 230 total aligned reads displayed.

GTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCT  >  NZ_CP025268/1293061‑1293316

                                        tACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCGCGCTGACGCTCGAGACGAACCTTAGTCGAAGGTTCTCAACCTTCCCCGCTGGTGGAGGATATTAGATTGCGGGTGCGCTGGAGA‑Gt                                                                              >  1:985487/1‑140 (MQ=11)

                                         aCTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGGCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCCGAATATTTGATTGCGGAATCGTTTgagcata                                                                              >  2:5993568/1‑136 (MQ=1)

                                         aCTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCGTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGTGA‑Gtt                                                                             >  1:7011601/1‑140 (MQ=255)

                                             aGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGTGA‑GTTCAgg                                                                         >  1:9484829/1‑140 (MQ=255)

                                              gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCCGAATATTTGATTGCGGCTTCGCTGGAGA‑GTTCAggg                                                                        >  2:11133214/1‑140 (MQ=11)

                                              gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAggg                                                                        <  2:2926006/140‑1 (MQ=21)

                                              gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAggg                                                                        <  1:6496884/140‑1 (MQ=21)

                                              gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAggg                                                                        <  1:9193532/140‑1 (MQ=21)

                                              gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGAGTCGCTTGAGA‑GTTCAggg                                                                        <  2:6413566/140‑1 (MQ=255)

                                               cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAATCTTCTCAACCTTACCCGCATGGGGAGAATATTTGATTGCGGGTTCGCTTGTGA‑GTTAAGGGa                                                                       >  1:9737482/1‑140 (MQ=11)

                                               cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCGTGCGA‑GGTCAGGGa                                                                       >  2:4629498/1‑140 (MQ=11)

                                               cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGATTGAGA‑GTTCAGGGa                                                                       >  2:5159430/1‑140 (MQ=255)

                                               cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCATCCCCGCATGGGGAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGa                                                                       >  2:3243186/1‑140 (MQ=255)

                                               cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCATGGTCGAAGATTCACAACCGTCCCCCCAGGGGCAGGCTAATTGATTGCGGATTCGCTTGAGA‑GGTAAgggc                                                                       >  1:6902502/1‑139 (MQ=11)

                                               cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCATAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGGTTGTGA‑GTTCAGGGa                                                                       >  1:6721331/1‑140 (MQ=11)

                                                gcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCACCGCTCACTCGCGGGCGCTCCAGTCGAACCGTGGTCGAAGCTTCTCAACCTTCCCCGCAGGGGCCGAATATTTTTTTGCGGATTCGGTTGGGA‑TTTCAgggtg                                                                      >  1:9357350/1‑138 (MQ=11)

                                                gcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGCACCTTAGTCGAAGCATCTCATCCTTCCCCGCATGGGCAGAAAATTTGATTGCGGAGTAGATTGGGA‑GTTCAGGGaa                                                                      >  2:2979475/1‑139 (MQ=11)

                                                    cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTTGTCGAAGCTTCTCATACTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGTGA‑GTTAAGGGACtttt                                                                  >  2:11283288/1‑140 (MQ=11)

                                                    cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGTAGCTTCTCATCCTTACCCGCATGGGCAGAATATTTGGTTTGGGATTCGCTTTAGA‑GTTCAGGGaatgtt                                                                  >  1:11522482/1‑135 (MQ=11)

                                                    cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCACTCGCTGACGCTCGAGCCGAAACTTAGTCGAATCATGACATCCTTACCCGCATGGGCCGAATAATTTATTGCGGATTCGGTTGTGA‑GTTGAGGGGCtttt                                                                  >  1:3334881/1‑140 (MQ=11)

                                                    cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCGCTCACGCGGTCGCTCGAGCCGAACCTTAGGCGAAGCTTCGCATCCTTCCCCGCCTGGGCAGAATATTTGTTTGCGGCTTCGCTTGTGA‑GTTCAGGGACgttt                                                                  >  2:1067098/1‑140 (MQ=11)

                                                    cgcgcTTCGCCCTTCGGGTCGTTGCCGGCGGCAACGCTCTCTCGCTGGCGCTCACGTCGAACCTTGGTCGAAGCTTCTCATACTTACCCGCATGGGCAGAATATTTGATTGCGGGTTCGGGTGGGA‑GTTCAGGGGCtttt                                                                  >  1:7544134/1‑140 (MQ=11)

                                                    cgcgcTTCGCCCTTCGGGTCGTTGCCAGCGGCAACGCTCTCACGCTGACGCTCGAGCCGAACCGTAGTCGAAGCTTCTCATCCTTCCCCGCAGGGGCCGAAAATTTGATAGCGGAGTCGCTTGAGA‑GTTGAGGGACgttt                                                                  >  1:7829307/1‑140 (MQ=11)

                                                     gcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTg                                                                 <  1:10552510/140‑1 (MQ=255)

                                                      cgcTTCGCCCTTTGGGTCGGTGACTGGGGCAACGCTCTCTCGCTGACGCTCGAGACGCACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGT‑GTTCAGGGACTTTTGa                                                                <  2:6761847/140‑1 (MQ=11)

                                                       gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGaa                                                               <  2:5858867/140‑1 (MQ=255)

                                                       gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCGTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGaa                                                               <  2:9223393/140‑1 (MQ=255)

                                                        cTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGaaa                                                              <  1:10123429/140‑1 (MQ=255)

                                                           cGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTg                                                           >  1:8718166‑M2/1‑139 (MQ=255)

                                                            gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCTAGACGAACCTTAGTCGAAGCTTCTCATCCGTCCCCGCATGGGCATAATATTTGATTGCGGATTCGCTTGAGT‑GTTCAGTGACTTTTGAAAGTga                                                          >  1:9651617‑M2/1‑138 (MQ=255)

                                                            gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGTCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTga                                                          >  2:2568001‑M2/1‑138 (MQ=255)

                                                            gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTga                                                          >  2:3048940‑M2/1‑138 (MQ=255)

                                                            gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTga                                                          >  2:10844970‑M2/1‑138 (MQ=255)

                                                            gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTga                                                          >  1:4706689‑M2/1‑138 (MQ=255)

                                                             cccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgat                                                         >  2:554239‑M2/1‑137 (MQ=255)

                                                             cccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGACGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgat                                                         >  1:3034270‑M2/1‑137 (MQ=255)

                                                             cccTTCGGGTCGTTGCCGGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgat                                                         >  1:11027710‑M2/1‑137 (MQ=255)

                                                               cTTCGGGTCGTTGCCTGCGGCACCGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCGTCTCATCCGTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatgg                                                       >  2:10198405‑M2/1‑135 (MQ=255)

                                                               cTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCACGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatgg                                                       >  2:9146756‑M2/1‑135 (MQ=255)

                                                                ttCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggt                                                      >  1:2372907‑M2/1‑134 (MQ=255)

                                                                   gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggt                                                   >  1:8818951‑M2/1‑131 (MQ=255)

                                                                   gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggt                                                   <  2:6594627‑M2/140‑10 (MQ=255)

                                                                   gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggt                                                   >  2:5590828‑M2/1‑131 (MQ=255)

                                                                   gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggt                                                   >  1:6589824‑M2/1‑131 (MQ=255)

                                                                   gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggt                                                   >  2:9814459‑M2/1‑131 (MQ=255)

                                                                   gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCGTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggt                                                   >  2:781221‑M2/1‑131 (MQ=255)

                                                                     gTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGATTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtgttgg                                                 <  2:7374103‑M2/140‑12 (MQ=255)

                                                                      tCGTTGCCTGCGGCAACGCTCCCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtggg                                                >  1:6725706‑M2/1‑128 (MQ=255)

                                                                       cGTTGCCTGCGGCAACGCTCTCTCGCTGAAGCACGAGCCCAACCTTAGTCGAAGCTTCTAATCCGTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGGTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggggggg                                               <  2:1259642‑M2/140‑14 (MQ=255)

                                                                        ggtgcCTGCGGCAACGCTCTCGCGCTGTCGCTCTAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGATTGAGA‑TTTCAGGGACTTTTGAAAGTgatggtggtggggg                                              >  2:9314286‑M2/3‑126 (MQ=255)

                                                                        gTTGCCTTCGTCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGAATTTTGAAAGTgatggtggtggggg                                              >  1:9890620‑M2/1‑126 (MQ=255)

                                                                        gTTGCCTGGCGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtggggg                                              >  1:10883114‑M2/1‑126 (MQ=255)

                                                                        gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtggggg                                              >  1:2758431‑M2/1‑126 (MQ=255)

                                                                        gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtggggg                                              >  2:11538577‑M2/1‑126 (MQ=255)

                                                                        gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtggggg                                              >  1:1626929‑M2/1‑126 (MQ=255)

                                                                        gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCGTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtggggg                                              >  1:4108547‑M2/1‑126 (MQ=255)

                                                                        gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGACGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtggggg                                              >  2:4110540‑M2/1‑126 (MQ=255)

                                                                           gCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaag                                           >  1:5242818‑M2/1‑123 (MQ=255)

                                                                           gCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaag                                           >  1:3748369‑M2/1‑123 (MQ=255)

                                                                           gCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATNTGATTGCGGAGTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaag                                           >  1:6308604‑M2/1‑123 (MQ=255)

                                                                             cTGCGTCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGTAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGAGTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaagga                                         >  2:441593‑M2/1‑121 (MQ=255)

                                                                             cTGCGGCAACGCTCTCTCGCTGTCGCTCTAGTCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaagga                                         >  1:2611339‑M2/1‑121 (MQ=255)

                                                                             cTGCGGCAACGCTCTCTCGCTGTCGCTCTAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaagga                                         >  1:8087413‑M2/1‑121 (MQ=255)

                                                                             cTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaagga                                         >  2:1790752‑M2/1‑121 (MQ=255)

                                                                             cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaagga                                         >  2:10339559‑M2/1‑121 (MQ=255)

                                                                             cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaagga                                         >  1:4870929‑M2/1‑121 (MQ=255)

                                                                             cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCCTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaagga                                         >  1:4717221‑M2/1‑121 (MQ=255)

                                                                             cTGCGGCAACGCTCTCGCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATATGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaagga                                         >  2:9535232‑M2/1‑121 (MQ=255)

                                                                              tGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAAACTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCCGAATATTTGATTGCGGATTCGGTGGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggat                                        <  2:2337828‑M2/140‑21 (MQ=255)

                                                                                  gCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattact                                    >  1:10240934‑M2/1‑116 (MQ=255)

                                                                                     aCGCTCTCTCGCTGTCGCTCCAGACGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑CTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcag                                 >  1:2156710‑M2/1‑113 (MQ=255)

                                                                                     aCGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGGCGAAGCTTCTCATCCGTCCCCGCATGGGCAGCATATGTGAGTGAGGAGT‑GGTGGGGACGTTCCGGGACTGGTGAGAGTGATGGTGGGGGGGGAAGGAtgaggacg                                 >  2:10578948/1‑133 (MQ=2)

                                                                                     aCGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcag                                 >  2:5650983‑M2/1‑113 (MQ=255)

                                                                                       gCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGCATATTTGATTGCGGAGTCGCGGGAGC‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcg                               <  1:5891215‑M2/140‑30 (MQ=255)

                                                                                       gCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcg                               >  1:8285230‑M2/1‑111 (MQ=255)

                                                                                       gCACTCTCGCAGACGCTCGACCCGAACCTTTGGCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATTTATGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGCAAGTgatggtggtgggggaaggattactcagcg                               >  1:7125882‑M2/1‑111 (MQ=255)

                                                                                        ctctctCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGGTTGTGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattacaaacatc                              <  2:3957181‑M2/140‑31 (MQ=255)

                                                                                          ctctcGCTGGCGCTCAAGTCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑TTTCAGGGCCTTTTGAAAGTgatggtggtgggggaaggattactcagcgctg                            >  1:4527241‑M2/1‑108 (MQ=255)

                                                                                          ctctcGCTGACGCTCCAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTATGAAAGTgatggtggtgggggaaggattactcagcgctg                            >  1:5665077‑M2/1‑108 (MQ=255)

                                                                                           tctcGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgc                           <  2:4877784‑M2/140‑34 (MQ=255)

                                                                                            ctcGCTGGCTCTCGCGGCGAACCTTTGTCGCCGCTTCTGAGCCTTCCGCGCTTTGGCAGATTTTTTTATGGCGGAGTCGTTTGAGT‑GTTGTTTGACTTTAGCAAGAGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAg                          <  1:11325908/140‑1 (MQ=9)

                                                                                            ctcGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcg                          >  1:8485220‑M2/1‑106 (MQ=255)

                                                                                              cGCTGACGCACGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCCGGGACTTTTGAAAGAgatggtggtgggggaaggattactcagcgctgcgcg                        >  1:1915168‑M2/1‑104 (MQ=255)

                                                                                                 tGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgctt                     >  1:6140419‑M2/1‑101 (MQ=255)

                                                                                                  gacgctcTCGCCGAACCTTTGTCGAAGCTTCTCATCCGTCCCCGCAGGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCCGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttc                    >  1:5152545‑M2/3‑100 (MQ=255)

                                                                                                  gacgctcGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgagggtggtgggggaaggattactcagcgctgagagcttc                    <  2:8308262‑M2/138‑41 (MQ=255)

                                                                                                   gcgcTCGAGTCGAACCTTGGTCGAAGCATCTCATCCTTCCCCGCATGGGCAGAATATTTCATTGGGGATTCGGTGGGAA‑GTTAAGGGACTTTTGAAAGAGATGGTGGTGGGGGAAGGATTCGATCCTTCGAAGTCGATgt                   >  2:9924026/1‑139 (MQ=11)

                                                                                                   acgctCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcg                   >  1:1681758‑M2/2‑99 (MQ=255)

                                                                                                    cgcTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgc                  >  1:1451751‑M2/1‑98 (MQ=255)

                                                                                                     gcTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑TTTCAGGGACTTTTGAGAGTgagggtggtgggggaaggattactaagcgcggcgcgcatcgcc                 <  2:1650904‑M2/140‑44 (MQ=255)

                                                                                                     gcTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgcc                 <  1:5509899‑M2/140‑44 (MQ=255)

                                                                                                     gcTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgcc                 <  1:6558532‑M2/140‑44 (MQ=255)

                                                                                                     gcTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagagctgagcgcttcgcc                 <  2:1595168‑M2/140‑44 (MQ=255)

                                                                                                       tCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCTGGGACTTTTGAAAGTgatggtggtgggggaacgattacacagctctgagagattcgccct               <  2:6334559‑M2/140‑46 (MQ=255)

                                                                                                         gAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgcccttc             >  1:6594628‑M2/1‑93 (MQ=255)

                                                                                                         gAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgcccttc             >  1:9168403‑M2/1‑93 (MQ=255)

                                                                                                          aGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagagcttcgcgcatcgcccaacg            <  1:296836‑M2/140‑49 (MQ=255)

                                                                                                           gCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGACTATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgagcgcttcgcccttcgg           <  2:8743421‑M2/140‑50 (MQ=255)

                                                                                                               aaCCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactaagcgctgcgcgcttcgcccttcgggtcg       <  1:7681272‑M2/140‑54 (MQ=255)

                                                                                                                    tAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgcccttcgggtcgttgcc  <  2:5725151‑M2/140‑59 (MQ=255)

GTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCT  >  NZ_CP025268/1293061‑1293316

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`