Predicted mutation
evidence seq id position mutation annotation gene description
RA NZ_CP025268 1,549,203 T→C pseudogene (1331/1331 nt) CXP41_RS08190 ← leucine‑rich repeat domain‑containing protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0252681,549,2030TC99.8% 1428.8 / NA 411pseudogene (1331/1331 nt)CXP41_RS08190leucine‑rich repeat domain‑containing protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (170/240);  minor base A (0/1);  total (170/241)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 411 total aligned reads displayed.

CAAGCTAACCTTCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCATTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTCATCTAAGGTCATGTTTTTAACTTTTATA  >  NZ_CP025268/1549066‑1549338
                                                                                                                                         |                                                                                                                                       
cAAGCTAACCTTCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTa                                                                                                                                       >  1:10163521/1‑140 (MQ=255)
   gCTAACCTTCAAACGGGGTTAATCTTTGAACGTATGTCATTTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCTCTaaaa                                                                                                                                    <  2:7307354/140‑1 (MQ=255)
   gCTAACCTTCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTaaaa                                                                                                                                    <  1:4431060/140‑1 (MQ=255)
    cTAACCTTCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTaaaaa                                                                                                                                   >  1:63197/1‑140 (MQ=255)
       aCCTTCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGc                                                                                                                                >  2:243885/1‑140 (MQ=255)
             aaaCGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGaa                                                                                                                          >  2:9901323/1‑140 (MQ=255)
              aaCGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAAc                                                                                                                         >  1:4276539/1‑140 (MQ=255)
                 ggggTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTgg                                                                                                                      >  2:1723813/1‑140 (MQ=255)
                       aaTCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGaaa                                                                                                                >  2:10749000/1‑140 (MQ=255)
                            ttGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTACAAAGGCCATGAACTGGAGGAAAACGAt                                                                                                           <  1:583184/140‑1 (MQ=255)
                            ttGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGAt                                                                                                           <  1:8135104/140‑1 (MQ=255)
                            ttGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGAt                                                                                                           <  1:4227924/140‑1 (MQ=255)
                            ttGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGAt                                                                                                           <  2:3831452/140‑1 (MQ=255)
                               aaCGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTg                                                                                                        >  2:8483303/1‑140 (MQ=255)
                                   tATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCCTGAACTGGAGGAAAACGATCTGTCCa                                                                                                    >  2:6574612/1‑140 (MQ=255)
                                    aTGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAg                                                                                                   >  2:4192913/1‑140 (MQ=255)
                                    aTGTCATGATTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTCTCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGTAAAACGATCTGTCCAg                                                                                                   <  2:804363/140‑1 (MQ=255)
                                     tGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGa                                                                                                  <  2:448340/140‑1 (MQ=255)
                                     tGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGa                                                                                                  >  2:2854925/1‑140 (MQ=255)
                                     tGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGa                                                                                                  <  2:7379014/140‑1 (MQ=255)
                                     tGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAAATAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGa                                                                                                  <  2:5344250/140‑1 (MQ=255)
                                        cATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAgg                                                                                               <  2:7112194/140‑1 (MQ=255)
                                         aTGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGt                                                                                              <  1:10566207/140‑1 (MQ=255)
                                             ttCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTAt                                                                                          <  1:2854925/140‑1 (MQ=255)
                                             ttCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTAt                                                                                          >  2:6821949/1‑140 (MQ=255)
                                             ttCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTAt                                                                                          <  1:8683795/140‑1 (MQ=255)
                                              tCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGt                                                                                              >  1:3202265/1‑135 (MQ=255)
                                              tCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGt                                                                                              <  2:3202264/135‑1 (MQ=255)
                                                 aCCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGt                                                                                      >  1:3882071/1‑140 (MQ=255)
                                                     ttCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCct                                                                                  <  2:5970617/140‑1 (MQ=255)
                                                     ttCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCct                                                                                  <  2:7733419/140‑1 (MQ=255)
                                                     caccgATCGTTCATCAAAAGGTTAACATAATCACTCTAATATCAACAACCACAGACACAGATAGAATTAGTGAAGAATTATTCAATAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGTTCGATCGGTTcat                                                                                  <  2:6957720/136‑3 (MQ=255)
                                                       cAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCctct                                                                                >  1:10385734/1‑140 (MQ=255)
                                                       cAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACGGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCctct                                                                                <  1:7616031/140‑1 (MQ=255)
                                                           tCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTa                                                                            <  2:8744408/140‑1 (MQ=255)
                                                           tCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTa                                                                            <  2:7452304/140‑1 (MQ=255)
                                                             gTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTAtt                                                                          >  1:1512770/1‑140 (MQ=255)
                                                               gAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGc                                                                        >  2:4743651/1‑140 (MQ=255)
                                                                   cTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGa                                                                    <  1:11484918/140‑1 (MQ=255)
                                                                       aGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGt                                                                >  1:10967696/1‑140 (MQ=255)
                                                                           ttACATATTAACTATATTCTCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGtaata                                                            <  2:7802868/140‑1 (MQ=255)
                                                                           ttACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGtaata                                                            <  1:7251710/140‑1 (MQ=255)
                                                                           ttACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGtaata                                                            <  1:2407286/140‑1 (MQ=255)
                                                                                   tAACTATATTATCACCAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGttat                                                    <  2:10466001/140‑1 (MQ=255)
                                                                                   tAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCg                                                        >  1:1178425/1‑136 (MQ=255)
                                                                                   tAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGttat                                                    >  2:3568435/1‑140 (MQ=255)
                                                                                   tAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGttat                                                    <  1:3360801/140‑1 (MQ=255)
                                                                                    aaCTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGc                                                                        >  1:2722556/1‑119 (MQ=255)
                                                                                    aaCTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGc                                                                        <  2:2722556/119‑1 (MQ=255)
                                                                                    aaCTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTaataat                                                          <  2:3992113/133‑1 (MQ=255)
                                                                                    aaCTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGttatt                                                   <  2:1891456/140‑1 (MQ=255)
                                                                                     aCTATATTATCAANAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTNTTGCCTGATTGTAATAATCGttatta                                                  >  1:6254897/1‑140 (MQ=255)
                                                                                     aCTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGttatta                                                  >  1:4505438/1‑140 (MQ=255)
                                                                                       tataTTATCAACAAGACCAGACACTTATAGAATGAGTGATGATTTATTCACTAAAAACGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTAGTGCCTGATTGTAATAATCGTTATTACa                                                <  1:5938650/140‑1 (MQ=255)
                                                                                       gatatTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACGGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACa                                                <  1:7817712/139‑1 (MQ=255)
                                                                                         tattatCAACAAGACCAGACACTTATAGACTTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagt                                              <  2:2586470/140‑1 (MQ=255)
                                                                                         tattatCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTaataat                                                          >  2:6475739/1‑128 (MQ=255)
                                                                                         tattatCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTaataat                                                          <  1:6475774/128‑1 (MQ=255)
                                                                                         tattatCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagt                                              <  1:2094359/140‑1 (MQ=255)
                                                                                            tatCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGACAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagtaag                                           >  2:10556486/1‑140 (MQ=255)
                                                                                             atCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagtaagt                                          <  1:3076650/140‑1 (MQ=255)
                                                                                              tCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTAc                                                 <  1:1912450/132‑1 (MQ=255)
                                                                                              tCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagtaagta                                         <  1:7679716/140‑1 (MQ=255)
                                                                                              tCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagtaagta                                         <  2:1104776/140‑1 (MQ=255)
                                                                                                 tcaaGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGACGGTATATCGGTTCCTCTCTTATAGCCTGATTGTAATATTCGTTATTACAGTAATGATTg                                      >  2:9557112/2‑140 (MQ=255)
                                                                                                 acaaGACCAGACACGTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGAGTGTAATAATCGTTATTACAGTAAGTATTg                                      >  2:5206265/1‑140 (MQ=255)
                                                                                                  caaGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGt                                     <  1:6821950/140‑1 (MQ=255)
                                                                                                   aaGACCAGACACTTATAGAATTAGTGATGATTTATTCACTaaaa                                                                                                                                    >  1:5114996/1‑44 (MQ=255)
                                                                                                   aaGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAAc                                                                                                                         >  1:11075763/1‑55 (MQ=255)
                                                                                                   aaGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGTAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTAGTGtt                                    >  2:3431611/1‑140 (MQ=255)
                                                                                                   aaGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGtt                                    >  1:11587696/1‑140 (MQ=255)
                                                                                                   aaGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCAGGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGtt                                    >  2:11229122/1‑140 (MQ=255)
                                                                                                        cAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCt                                                                      <  2:204405/101‑1 (MQ=255)
                                                                                                         aGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTc                              >  1:4086813/1‑140 (MQ=255)
                                                                                                              cTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTCATCTa                         <  1:4763016/140‑1 (MQ=255)
                                                                                                              cTTATAGAATTAGTGATGATTTAGTCACTAAAAAGGCCATGAACTGGAGGAAAAAGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTCATCTa                         <  2:4356663/140‑1 (MQ=255)
                                                                                                                tataGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTCATCTAAg                       >  1:6571574/1‑140 (MQ=255)
                                                                                                                   aGAATTAGTGATGATTTAGTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGGTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTCATCTAAGGTc                    <  2:10079042/140‑1 (MQ=255)
                                                                                                                    gAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTCATCTAAGGTCa                   <  2:11467977/140‑1 (MQ=255)
                                                                                                                    gAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTCATCTAAGGTCa                   <  2:1260626/140‑1 (MQ=255)
                                                                                                                     aaTTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTCATCTAAGGTCAt                  >  2:5089663/1‑140 (MQ=255)
                                                                                                                     aaTTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCAAGAAGGTCTATCTGTTCCTCTCTTATTGACTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTCATCTAAGGTCAt                  >  2:1460436/1‑140 (MQ=255)
                                                                                                                       ttAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCct                                                                                  >  1:9791921/1‑74 (MQ=255)
                                                                                                                       ttAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGtaa                                                              <  2:6280450/94‑1 (MQ=255)
                                                                                                                         aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTa                                                                            <  1:744614/78‑1 (MQ=255)
                                                                                                                         aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGtaata                                                            <  2:9336416/94‑1 (MQ=255)
                                                                                                                         aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTaataat                                                          >  1:3586546/1‑96 (MQ=255)
                                                                                                                         aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGtta                                                     <  2:8988681/101‑1 (MQ=255)
                                                                                                                         aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGtta                                                     >  1:8988682/1‑101 (MQ=255)
                                                                                                                         aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTAc                                                 <  1:4672984/105‑1 (MQ=255)
                                                                                                                         aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagt                                              <  1:6119376/108‑1 (MQ=255)
                                                                                                                         aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTAtt                                <  2:1158054/122‑1 (MQ=255)
                                                                                                                         aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTAt                                 <  1:562206/121‑1 (MQ=255)
                                                                                                                         aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTAt                                 >  2:562206/1‑121 (MQ=255)
                                                                                                                         aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTCATCTAAGGTCATGttt              >  1:7076075/1‑140 (MQ=255)
                                                                                                                           tgatgaTTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTCATCTAAGGTCATGttttt            <  1:2920316/140‑1 (MQ=255)
                                                                                                                             atgatTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTCATCTAAGGTCATGTTTTTaa          <  2:2977878/140‑1 (MQ=255)
                                                                                                                               gatTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTCATCTAAGGTCATGTTTTTAACt        >  2:3347628/1‑140 (MQ=255)
                                                                                                                                   tATTCACTAAAAAGGCCATGAACTGGAGTAAAACGATCTTTCAAGAAGTTCTATCGGTTCATCTCTTATTGCCTGATTGTAATAATCGTTATTACTGTAAGTATTGTTTTTTTCATCTAAGGTCATGTTTTTATCTTTta    <  1:9557113/140‑1 (MQ=255)
                                                                                                                                    aTTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATCATCGTTATTACAGTAAGTATTGTTTATTTCATCTAAGGTCATGTTTTTAACTTTtat   >  1:9315301/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                       
CAAGCTAACCTTCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCATTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTCATCTAAGGTCATGTTTTTAACTTTTATA  >  NZ_CP025268/1549066‑1549338

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: