Predicted mutation
evidence seq id position mutation annotation gene description
RA NZ_CP025268 1,867,449 G→A intergenic (‑205/‑137) msrB ← / → gapA peptide‑methionine (R)‑S‑oxide reductase MsrB/glyceraldehyde‑3‑phosphate dehydrogenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0252681,867,4490GA99.8% 2021.8 / NA 531intergenic (‑205/‑137)msrB/gapApeptide‑methionine (R)‑S‑oxide reductase MsrB/glyceraldehyde‑3‑phosphate dehydrogenase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base A (213/317);  minor base C (0/1);  total (213/318)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 536 total aligned reads displayed.

TGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGGGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATA  >  NZ_CP025268/1867312‑1867584
                                                                                                                                         |                                                                                                                                       
     aaaTTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGagt                                                                                                                                  <  1:5360594/140‑1 (MQ=255)
      aaTTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGagtc                                                                                                                                 >  2:5561565/1‑140 (MQ=255)
        ttttGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGACGAGTGAGGCGagtcag                                                                                                                               <  1:3956430/140‑1 (MQ=255)
        ttttGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGagtcag                                                                                                                               <  1:10365381/140‑1 (MQ=255)
        ttttGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGagtcag                                                                                                                               <  1:2595865/140‑1 (MQ=255)
            gTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTcgc                                                                                                                           >  1:6041559/1‑140 (MQ=255)
             tCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTcgcg                                                                                                                          <  2:5330065/140‑1 (MQ=255)
              ccTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGt                                                                                                                         <  1:1842238/140‑1 (MQ=255)
              ccTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGt                                                                                                                         <  2:7122228/140‑1 (MQ=255)
              ccTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGt                                                                                                                         <  1:5101569/140‑1 (MQ=255)
              ccTAAACTTGATCTCGACGAAATGGCGGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGt                                                                                                                         <  2:7306212/140‑1 (MQ=255)
                tAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTaa                                                                                                                       <  1:409598/140‑1 (MQ=255)
                tAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTaa                                                                                                                       <  2:10009396/140‑1 (MQ=255)
                tAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTaa                                                                                                                       <  1:7032166/140‑1 (MQ=255)
                tAAACTGCATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAACAGTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTaa                                                                                                                       <  2:6628126/140‑1 (MQ=255)
                    cTTGATCTCGACGAAATGGCTGCACCTAACTCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCt                                                                                                                   <  2:318736/140‑1 (MQ=255)
                     ttGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCtt                                                                                                                  <  1:6796694/140‑1 (MQ=255)
                     ttGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCtt                                                                                                                  <  1:2835427/140‑1 (MQ=255)
                       gATGTCGACGAAATGGCTGCACCTAAATCGTGATGAAATTCACATTTTTATCGTAATTGCCCTGTAAAATTCGGGGCGCCGACCCCAGGTGGTCTCAAGCGCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCGTAg                                                                                                                >  2:9438838/1‑140 (MQ=255)
                       gATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTGATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAg                                                                                                                >  1:3122856/1‑140 (MQ=255)
                       gATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCGCTAGCGCCAAGGAAGAGTGAGGCGAGTCAGGCGCGTAATGCGTAg                                                                                                                >  2:8296077/1‑140 (MQ=255)
                       gATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGAACCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAAAGATTAg                                                                                                                >  2:390168/1‑140 (MQ=255)
                       gATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTGTAAAATTCGGGGCGCCGCCCCCATGTGGTCTCAAGCCCACAGGAAGAGTGAGGCGAGTCAGTCGCGTCAGGCTTAg                                                                                                                >  2:9682582/1‑140 (MQ=255)
                         tctcGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGc                                                                                                              <  1:6512936/140‑1 (MQ=255)
                          ctcGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGca                                                                                                             <  1:8288711/140‑1 (MQ=255)
                          ctcGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGca                                                                                                             <  2:8703373/140‑1 (MQ=255)
                          ctcGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGca                                                                                                             <  2:1502275/140‑1 (MQ=255)
                             gacgaAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAg                                                                                                          <  2:4484028/140‑1 (MQ=255)
                               cgaAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGga                                                                                                        >  1:2905182/1‑140 (MQ=255)
                                    tGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGgattgat                                                                                                   <  1:4620155/140‑1 (MQ=255)
                                            ccTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCa                                                                                           <  1:7212239/140‑1 (MQ=255)
                                                 aTCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGAt                                                                                      <  2:11071045/140‑1 (MQ=255)
                                                 aTCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGAt                                                                                      >  1:2274166/1‑140 (MQ=255)
                                                 aTCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGAt                                                                                      <  2:2897376/140‑1 (MQ=255)
                                                    gTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGa                                                                                   <  2:4187729/140‑1 (MQ=255)
                                                     tgatgaAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCCACGGACGAGTGAGGCGAGTCAGTCGCGGTATGCTTAGGCACAGGATTGATTTGTCGCTCTGATTGac                                                                                  >  2:10815750/1‑140 (MQ=255)
                                                     tgatgaAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGac                                                                                  >  1:8932524/1‑140 (MQ=255)
                                                      gatgaAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGACGACCCCATGTGGTCTCAAGCCCAAAGTAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGaca                                                                                 <  2:4874056/140‑1 (MQ=255)
                                                       atgaAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGacac                                                                                >  1:7696734/1‑140 (MQ=255)
                                                       atgaAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGacac                                                                                >  1:1563134/1‑140 (MQ=255)
                                                       atgaAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGacac                                                                                >  1:3769066/1‑140 (MQ=255)
                                                       aagaAAATCACATTTTTATGGTAATTGCCCTTGAACATTCGCGGCTCCGACCCCATGTGGTCTCTAGCCCAAAGGACGAGTGAGGCTAGTCAGTCGCGTAATGCTTAGGATCAGTATTGATTTGTCGCAATGAGTGacac                                                                                >  2:6878524/3‑140 (MQ=255)
                                                         gaAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGa                                                                              <  1:8606025/140‑1 (MQ=255)
                                                           cactCACATTTTTATCGTAATTGCCCTATAAAAGACGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTGAGGCACAGGAGTGATTTGTCGCAATGATTGACACGAtt                                                                            <  1:1631553/137‑1 (MQ=255)
                                                           aaaTCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGAtt                                                                            <  1:5210085/140‑1 (MQ=255)
                                                                     tttATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGTACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACg                                                                  <  2:91156/140‑1 (MQ=255)
                                                                     tttATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACg                                                                  <  2:3458162/140‑1 (MQ=255)
                                                                     tttATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACg                                                                  <  2:5078199/140‑1 (MQ=255)
                                                                     tttATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACg                                                                  <  2:2333608/140‑1 (MQ=255)
                                                                     tttATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACg                                                                  <  1:11415647/140‑1 (MQ=255)
                                                                     tttATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACg                                                                  <  1:8251451/140‑1 (MQ=255)
                                                                     tttATCGTAATTGCCCCTTTAAATTCTGGGCGCCGACCCCATGTGGCCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACg                                                                  <  2:8861518/140‑1 (MQ=255)
                                                                            tAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTa                                                           >  1:1005923/1‑140 (MQ=255)
                                                                              aTTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAg                                                         >  1:3541681/1‑140 (MQ=255)
                                                                                            ttCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAAtttt                                           >  1:2118837/1‑140 (MQ=255)
                                                                                             tCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTa                                          <  2:7761896/140‑1 (MQ=255)
                                                                                                 ggCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAgg                                      <  1:4061736/140‑1 (MQ=255)
                                                                                                 ggCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAgg                                      <  2:5895350/140‑1 (MQ=255)
                                                                                                   ctccGACCCCATGTGGTCTCCTGCCCAAAGGAAGAGTTAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAATGTTTTTGTAATTTTACAGGCa                                    <  2:8120172/138‑1 (MQ=255)
                                                                                                   cgcCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCa                                    <  1:2439996/140‑1 (MQ=255)
                                                                                                   cgcCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCATGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCa                                    <  1:1183225/140‑1 (MQ=255)
                                                                                                     ccGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAAc                                  <  1:10985142/140‑1 (MQ=255)
                                                                                                           ccATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGAGTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTa                            >  1:10598806/1‑140 (MQ=255)
                                                                                                             aTGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTAtt                          <  2:1777149/140‑1 (MQ=255)
                                                                                                                tgGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCAc                       <  1:3323175/140‑1 (MQ=255)
                                                                                                                   tctcAAGCCCAATGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTCGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCGTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCCACCGTTGATTCAcgag                    >  2:6686207/1‑137 (MQ=255)
                                                                                                                   tctcAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACtct                    >  2:11276215/1‑138 (MQ=255)
                                                                                                                   tctcAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTaa                    >  1:8134502/1‑140 (MQ=255)
                                                                                                                   tctcAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTaa                    >  1:1113835/1‑140 (MQ=255)
                                                                                                                    ctcAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGt                                                                                                                         >  2:841575/1‑38 (MQ=255)
                                                                                                                      cAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACaa                 <  2:3755620/140‑1 (MQ=255)
                                                                                                                       aaGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACaaa                >  1:4923950/1‑140 (MQ=255)
                                                                                                                       aaGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACaaa                >  2:10248048/1‑140 (MQ=255)
                                                                                                                       aaGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACaaa                >  1:1297256/1‑140 (MQ=255)
                                                                                                                        aGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAAt               <  1:5488489/140‑1 (MQ=255)
                                                                                                                        aGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAAt               >  1:11467773/1‑140 (MQ=255)
                                                                                                                        aGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAAt               <  1:9513379/140‑1 (MQ=255)
                                                                                                                          cccAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAg             <  1:6147901/140‑1 (MQ=255)
                                                                                                                           ccAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGc            <  1:9777217/140‑1 (MQ=255)
                                                                                                                           ccAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGc            <  2:7436034/140‑1 (MQ=255)
                                                                                                                           ccAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGc            <  1:7839048/140‑1 (MQ=255)
                                                                                                                           ccAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGc            <  1:9620563/140‑1 (MQ=255)
                                                                                                                             aaaGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTa                                          >  2:4340555/1‑108 (MQ=255)
                                                                                                                             aaaGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTa                                          <  1:4340556/108‑1 (MQ=255)
                                                                                                                             aaaGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCtg          >  2:1222892/1‑140 (MQ=255)
                                                                                                                             aaaGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCtg          <  2:1935206/140‑1 (MQ=255)
                                                                                                                               aGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTAtt                          <  2:9236321/122‑1 (MQ=255)
                                                                                                                                ggAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCtggtg       <  2:6218802/140‑1 (MQ=255)
                                                                                                                                ggAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCtggtg       <  2:10597968/140‑1 (MQ=255)
                                                                                                                                ggAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCtggtg       <  2:21180/140‑1 (MQ=255)
                                                                                                                                ggAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCtggtg       <  1:5722325/140‑1 (MQ=255)
                                                                                                                                ggAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCtggtg       <  1:7329207/140‑1 (MQ=255)
                                                                                                                                ggAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCtggtg       <  1:3020127/140‑1 (MQ=255)
                                                                                                                                ggAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCtggtg       <  1:6400415/140‑1 (MQ=255)
                                                                                                                                ggAAGAGTGAGGCGAGACAGTCGCGTACAGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCGTGACGCTGCGTAAGGTATTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCtggtg       <  1:7629012/140‑1 (MQ=255)
                                                                                                                                gcaatagTGAGGCGAGTCAGTCGCGTCATGCATAGGCACAGGATTGATTTGTCGCAATGATTGACACGCTTCCGCATGACGCTGCGTAAGGATTTTGTAATTTTACAGGCAACCTTTTATACACTAACAAATAGCtggtg       <  2:4781858/135‑1 (MQ=255)
                                                                                                                                cgAAGAGTGAGGCGAGTCAGTCGCGTCATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGATTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCtggtg       <  1:9215099/139‑1 (MQ=255)
                                                                                                                                    gagTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTCACAAATAGCTGGTGGAat   >  1:3388635/1‑140 (MQ=255)
                                                                                                                                    gagTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAat   >  1:5909315/1‑140 (MQ=255)
                                                                                                                                     agTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAata  >  2:2534335/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                       
TGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGGGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATA  >  NZ_CP025268/1867312‑1867584

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: