| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 2,790,751 | A→G | pseudogene (333/2252 nt) | CXP41_RS24390 → | alpha‑amylase family glycosyl hydrolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 2,790,751 | 0 | A | G | 99.9% | 3035.1 / NA | 873 | pseudogene (333/2252 nt) | CXP41_RS24390 | alpha‑amylase family glycosyl hydrolase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (626/246); minor base T (0/1); total (626/247) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.83e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 873 total aligned reads displayed.
AGAAAAAGTTATTAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGAT‑A‑AATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAACA > NZ_CP025268/2790616‑2790886 | attaATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACgaga > 2:2962324/1‑140 (MQ=255) attaATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACgaga < 1:11522536/140‑1 (MQ=255) tCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGa > 2:2703325/1‑140 (MQ=255) tCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGa > 1:9968646/1‑140 (MQ=255) tCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGa > 2:3174462/1‑140 (MQ=255) tCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGa > 2:2391508/1‑140 (MQ=255) tCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGa > 1:8101516/1‑140 (MQ=255) tCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGa > 2:5654601/1‑140 (MQ=255) gTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTg > 2:11034895/1‑140 (MQ=255) ttAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGa > 1:9246095/1‑140 (MQ=255) ttAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGa > 1:1312405/1‑140 (MQ=255) ttAAAAAACGATTATAAAATTTCACTTTATCCAGATACAACTTACCGAGAGTTGAATAAAGAAGCACATCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATAA‑AATGAttta > 1:9870400/1‑138 (MQ=255) aaaaaaCGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGtaa > 2:11261972/1‑140 (MQ=255) aaaCGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAagag > 1:6400548/1‑140 (MQ=255) cGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTg > 2:8118163/1‑140 (MQ=255) aTTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGAt > 2:9122697/1‑140 (MQ=255) aTTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGAt > 2:8375391/1‑140 (MQ=255) aaTTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCg < 2:6645999/140‑1 (MQ=255) tCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGgtgt > 1:5926135/1‑140 (MQ=255) cccTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCg > 1:10795407/1‑135 (MQ=255) cccTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGtt > 1:5830633/1‑140 (MQ=255) tttCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTAt > 2:5989338/1‑140 (MQ=255) tttCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTAt < 2:4585177/140‑1 (MQ=255) tctcCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCa > 1:9695855/1‑140 (MQ=255) ccAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTa < 1:10926437/140‑1 (MQ=255) aCTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGTGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGc > 2:5418284/1‑140 (MQ=255) aCTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATgg < 1:2432440/134‑1 (MQ=255) aCTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGc > 1:5606643/1‑140 (MQ=255) cTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCt > 2:2048776/1‑140 (MQ=255) ttACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTg < 2:8500422/140‑1 (MQ=255) aCCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGaa > 2:5531703/1‑140 (MQ=255) aCCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGaa > 2:10563639/1‑140 (MQ=255) ccGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAAc < 2:3392333/140‑1 (MQ=255) agTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAAGGATTGAATGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGACCATTTc > 2:4282391/1‑140 (MQ=255) tGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCAcc < 2:2855172/140‑1 (MQ=255) aaTAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGACAAACATAGGTTTATCAACGAGAT‑ACCATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGCACATTTCAcccc > 2:6306385/1‑139 (MQ=255) cagcaCAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGTTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGATTATCAGTATGGTCGTGCTGAACATTTCACCCACATtata > 1:10436256/1‑140 (MQ=255) cagcaCAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATtata > 2:5024311/1‑140 (MQ=255) cagcaCAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATtata > 1:4840336/1‑140 (MQ=255) agcaCAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTatat < 2:4866094/140‑1 (MQ=255) cacaGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCt > 1:6227752/1‑140 (MQ=255) cacaGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCt > 1:11327645/1‑140 (MQ=255) cGTAGCATTACAGCGCCAGACAGGCTAGGAGAAAGAAATACATAGGTTTCTCAACGAGAT‑ACAATGATTGACAGAGGTGTTAACAGCGGTGTTTATCAGTATGGTCGTGGTGTACATTTCACCCCCATTATATCTGACaa > 2:10202165/1‑140 (MQ=255) cGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAATACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACaa > 2:746740/1‑140 (MQ=255) cGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACaa > 2:517029/1‑140 (MQ=255) cGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACaa > 1:903489/1‑140 (MQ=255) cGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACaa > 2:6729540/1‑140 (MQ=255) cGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACaa > 1:3298207/1‑140 (MQ=255) cGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACaa > 1:4725352/1‑140 (MQ=255) cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa > 1:8826236/1‑140 (MQ=255) cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa > 1:4116671/1‑140 (MQ=255) cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa > 2:7051457/1‑140 (MQ=255) aGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCaa < 1:540446/140‑1 (MQ=255) cgcCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCaaaa > 2:6498980/1‑140 (MQ=255) cgcCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCaaaa > 1:2244086/1‑140 (MQ=255) ccAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGa > 1:2675855/1‑140 (MQ=255) ccAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGa < 1:2855096/140‑1 (MQ=255) cAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGttt > 2:6151684/1‑78 (MQ=255) cAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGAt < 1:10114596/140‑1 (MQ=255) gACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATaa > 2:156380/1‑140 (MQ=255) gACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATaa > 1:6081384/1‑140 (MQ=255) gACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATaa > 1:4405821/1‑140 (MQ=255) gACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATaa > 1:7199158/1‑140 (MQ=255) aGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAata < 2:6948979/140‑1 (MQ=255) ggATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAatat < 2:11398726/140‑1 (MQ=255) gATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGaaa < 1:501255/50‑1 (MQ=255) aTAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGt > 1:1792919/1‑140 (MQ=255) gagaAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCAcc > 1:8607914/1‑95 (MQ=255) gagaAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCAcc > 1:8322091/1‑95 (MQ=255) gagaAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCa > 2:18816/1‑140 (MQ=255) agaaagaaAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCat < 2:3676083/140‑1 (MQ=255) agaaagaaAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCat < 2:868444/140‑1 (MQ=255) aaagaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCatat > 1:2563170/1‑140 (MQ=255) aaagaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCatat > 2:8958309/1‑140 (MQ=255) agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAATAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc > 2:932021/1‑140 (MQ=255) agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGc > 1:10239102/1‑77 (MQ=255) agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCAc < 1:7575047/89‑1 (MQ=255) agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAATTATGTTGCATATGc > 2:1300263/1‑140 (MQ=255) agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATg > 1:6649149/1‑130 (MQ=255) agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCata > 1:7812717/1‑137 (MQ=255) agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc > 2:2521990/1‑140 (MQ=255) agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc > 2:9929011/1‑140 (MQ=255) agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc > 1:1451076/1‑140 (MQ=255) agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc > 1:2072096/1‑140 (MQ=255) agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc > 1:3596768/1‑140 (MQ=255) agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc > 2:7807499/1‑140 (MQ=255) agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc > 1:5573829/1‑140 (MQ=255) agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc > 1:7017044/1‑140 (MQ=255) agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc > 2:10287604/1‑140 (MQ=255) agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc > 2:10853547/1‑140 (MQ=255) agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGGTGCCTATGc > 2:7675643/1‑140 (MQ=255) gaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCt < 1:4547664/140‑1 (MQ=255) gaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCt < 2:9652216/140‑1 (MQ=255) aaCATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTa < 2:7260271/140‑1 (MQ=255) aaCATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTa < 1:5196212/140‑1 (MQ=255) aaCATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTa > 1:6780782/1‑140 (MQ=255) aaCATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTa > 1:3902097/1‑140 (MQ=255) aaCATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTa > 1:3147204/1‑140 (MQ=255) aaCATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTa > 1:1947995/1‑140 (MQ=255) aaCATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTa < 2:396795/140‑1 (MQ=255) | AGAAAAAGTTATTAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGAT‑A‑AATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAACA > NZ_CP025268/2790616‑2790886 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |