| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 3,864,419 | T→C | pseudogene (1103/1613 nt) | CXP41_RS20140 ← | PTS sugar transporter subunit IIB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 3,864,419 | 0 | T | C | 99.8% | 2245.5 / NA | 645 | pseudogene (1103/1613 nt) | CXP41_RS20140 | PTS sugar transporter subunit IIB |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (317/327); minor base A (1/0); total (318/327) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.93e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 646 total aligned reads displayed.
GTGCACATGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CC‑‑‑‑ATGT‑‑‑T‑‑‑CACCAC‑‑‑ACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGT > NZ_CP025268/3864282‑3864547 | gTTGAACTGCAGAGTCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCa > 1:10900490/1‑140 (MQ=255) ttGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAg > 1:4221614/1‑140 (MQ=255) ttGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAg > 1:3964686/1‑140 (MQ=255) tGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGa > 2:5161999/1‑140 (MQ=255) gAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGAc < 2:4228502/140‑1 (MQ=255) gAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGAc > 1:5663463/1‑140 (MQ=255) aaCTTCAGAATCAGTGTGTGGAAAACCACGAAGTACAGCAGTGTAAAGCACAACCCAATTGCGATGTGGGTCAGCATCATATCCTCGTGGTTGCTCAACATCGGGATCCAGTTATGCGGTAAAACCAAGACAATCAGAcc < 2:6168111/140‑1 (MQ=255) aCTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCt > 2:6664936/1‑140 (MQ=255) gCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCg > 1:10216304/1‑140 (MQ=255) gCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCg > 1:2950241/1‑140 (MQ=255) aGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑cc > 2:11305149/1‑140 (MQ=255) gAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGCGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑ccc < 1:9501544/140‑2 (MQ=255) aaTCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑ccca < 1:5361146/140‑3 (MQ=255) tCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTACAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑cccatg < 2:7334409/140‑5 (MQ=255) tCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑cccatg < 1:1602873/140‑5 (MQ=255) gtgtGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tg > 2:1530450‑M1/1‑139 (MQ=255) gtgtGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tg < 1:11493689‑M1/140‑2 (MQ=255) gCGGAAAACCACGAAGTACAGCATGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGG‑‑‑Tgccca < 2:2489875‑M1/140‑6 (MQ=255) gCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgccca < 2:4989151‑M1/140‑6 (MQ=255) gCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgccca < 1:6591633‑M1/140‑6 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccac > 2:7144612‑M1/1‑134 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccac < 2:9214324‑M1/140‑7 (MQ=255) ggAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccacc < 2:563767‑M1/140‑8 (MQ=255) gAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccacca < 1:3590899‑M1/140‑9 (MQ=255) aCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacacc > 1:3227689‑M1/1‑128 (MQ=255) aCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacacc > 1:4947688‑M1/1‑128 (MQ=255) aCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑ccca > 1:2212050/1‑122 (MQ=255) ccACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacacca < 2:9463145‑M1/140‑14 (MQ=255) aCGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaa < 2:3216335‑M1/140‑16 (MQ=255) aaGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagag < 1:7399154‑M1/140‑19 (MQ=255) aaGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagag < 1:9195930‑M1/140‑19 (MQ=255) aGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagaga < 2:114465‑M1/140‑20 (MQ=255) aGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagaga < 1:8736163‑M1/140‑20 (MQ=255) aGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagaga > 1:10043007‑M1/1‑121 (MQ=255) aGTACAGCAGGGTAAAGCACAACCCAATGGCGAGTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagaga < 2:7847780‑M1/140‑20 (MQ=255) agtgtaaAGCACAACCCAATGGCGATTTGGGTCAGCATCATAGCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattac < 2:7523894‑M1/137‑28 (MQ=255) gggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacg > 1:851099‑M1/1‑112 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacgg > 1:9680047‑M1/1‑111 (MQ=255) gTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggt < 1:3672360‑M1/140‑31 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAATACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtc > 1:11108505‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattactgtc > 2:2848430‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtc > 1:2689489‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtc > 1:6980890‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtc > 2:537679‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtc > 2:8596787‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGAATCATATCCGCGTGGTTGCTGAACAACGGGAAACATTTTTTCGGTAAAAACTAGTCAATCTGACCTACG‑CCCAAGATGC‑‑‑C‑‑‑AACCAC‑‑‑ACCAAAGAGATAAATTActtac > 2:8436110/1‑136 (MQ=255) cacaACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacat > 2:7672472‑M1/1‑104 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattga > 1:1120833‑M1/1‑101 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattga > 2:1972909‑M1/1‑101 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattga > 1:1393621‑M1/1‑101 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgag < 1:9919892‑M1/140‑41 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgag < 2:1409557‑M1/140‑41 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgagg > 2:2268756‑M1/1‑99 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAATCCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccatagagatacattacggtcgacattgaggccgcc > 2:9683787‑M1/1‑94 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgcc > 1:2439051‑M1/1‑94 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgcc > 1:2028275‑M1/1‑94 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:672213‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccg > 1:9069946‑M1/1‑91 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccg < 2:9069946‑M1/135‑45 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGGTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:11120370‑M1/140‑50 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 2:3068827‑M1/1‑89 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 1:5853081‑M1/1‑89 (MQ=255) tttGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacg < 1:10698533‑M1/140‑53 (MQ=255) tCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgt < 1:1757459‑M1/140‑59 (MQ=255) cAGCATCACCCCCGCGTGGCAGCTGACCACCGGCACCCCGCCTTGCGGTAACACCCAGCCACTCAGACCTCCGCCC‑‑‑‑AAGT‑‑‑TGCCCACCAC‑‑‑CCCCAAGAGCACCATAACGGTCGACCTTGAGGCCGCCAGCACGGCGTGTa < 2:3340984/140‑1 (MQ=255) aGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtac > 1:4123292‑M1/1‑80 (MQ=255) catcatATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgagaccgccagcacggcgtgtaccg > 2:5962710‑M1/1‑78 (MQ=255) tcatATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑TTGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgca < 1:7276473‑M1/140‑65 (MQ=255) tcatATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgca < 1:8284515‑M1/140‑65 (MQ=255) tcatATCCGCGTGGTTGCTGAACATCGGGATACATTTTTGCGGTATAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattactgtcgacattgtggccgccagcacggcgtgtaccgca < 2:699113‑M1/140‑65 (MQ=255) tatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaac > 1:105556‑M1/1‑73 (MQ=255) cgcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagca < 1:7533082‑M1/140‑72 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcacacagcaa > 2:8199262‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 2:4433272‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 1:7169585‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 1:5547999‑M1/1‑68 (MQ=255) cgTGGTTGCTGAACATCGGGATCCCGGTTTGCGGTAAAACCTAGTCCATGAGACCTCCGCCC‑‑‑‑ATGT‑‑‑T‑‑‑GACCACCTGACCAATGAGATTCATTACGGTCGACAGTGAGGCCGCCAGCAGGGCGTGTAGCGCAGTCAGcgag > 2:3893386/1‑137 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAATCCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaac > 2:4861629‑M1/1‑67 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaac > 1:7659509‑M1/1‑67 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Agcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaac > 2:9290579‑M1/1‑67 (MQ=255) gTGGTTGCTGAACATCTGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacg < 2:10617131‑M1/140‑75 (MQ=255) tGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaatgagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacgg > 1:1163167‑M1/1‑65 (MQ=255) tGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaa < 2:7052411‑M1/140‑80 (MQ=255) cctcgGTATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacatggaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaaca < 2:10366651‑M1/138‑87 (MQ=255) aTCGTGATCCAGTTTTGCGGTACACCCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatactttacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacag < 2:10973479‑M1/140‑88 (MQ=255) tCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccccaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg > 2:1737467‑M1/1‑52 (MQ=255) tCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg > 2:5297998‑M1/1‑52 (MQ=255) ggATCCAGTTTTGAGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaag > 1:6262309‑M1/1‑49 (MQ=255) ggAGCCAGTTTTGCGGTAAATCCTAGTCACTCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaatgagatccattacggtcgaccttgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgctcaggaag > 2:8797150‑M1/1‑49 (MQ=255) gATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACATCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaagg > 2:9809310‑M1/1‑48 (MQ=255) aTCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggt < 2:3620252‑M1/140‑94 (MQ=255) tCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggta > 1:7984530‑M1/1‑46 (MQ=255) cAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaa > 1:4757623‑M1/1‑44 (MQ=255) aGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaat > 1:4561572‑M1/1‑43 (MQ=255) gTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacagtgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaatt > 2:2109013‑M1/1‑42 (MQ=255) ggTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 2:10706953‑M1/140‑106 (MQ=255) ggTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 2:11602252‑M1/140‑106 (MQ=255) ggTAAAACCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 2:5821782‑M1/140‑106 (MQ=255) ggTAAAACCAAGTCAACCAGACCTCCGCCC‑‑‑‑ATGTAGCC‑‑‑CACCCC‑‑‑ACCAAAGAGATCCATTACGGTCGACCATGAGGCCGCCAGCACGGCGTGTACCCCAAACAGCACCGGTGAAAGGCCCACGAAGGTAAATTCCAGCgg < 2:64427/140‑1 (MQ=255) aaaCCTAGTCAATCAGACCTCCGCCC‑‑‑‑ATGT‑‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcg > 1:3395619‑M1/1‑31 (MQ=255) | GTGCACATGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CC‑‑‑‑ATGT‑‑‑T‑‑‑CACCAC‑‑‑ACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGT > NZ_CP025268/3864282‑3864547 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |