| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,175,450 | +G | pseudogene (483/632 nt) | comR ← | TetR family copper‑responsive transcriptional repressor ComR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,175,448 | 1 | . | G | 98.7% | 2175.1 / 15.0 | 627 | pseudogene (485/632 nt) | comR | TetR family copper‑responsive transcriptional repressor ComR |
| Reads supporting (aligned to +/- strand): ref base . (1/7); new base G (226/393); total (227/400) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.69e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 644 total aligned reads displayed.
CAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGC‑G‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAGTTGTTGATCATGAAG > NZ_CP025268/1175310‑1175582 | cGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGC‑g‑ggatt > 2:8070161/1‑136 (MQ=255) gCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTcc > 2:230804/1‑140 (MQ=255) aTACACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCcg < 1:10086886/140‑1 (MQ=255) aTAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCcg < 2:986186/140‑1 (MQ=255) aTAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGAGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCcg < 1:641277/140‑1 (MQ=255) aTAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGAAGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCcg < 2:4615608/140‑1 (MQ=255) tAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCcgc > 2:940035/1‑140 (MQ=255) ccccGCAAAGACGGACCTGCAATCAGCAACAGTTTTTCCAGCGATGCACCTTCGCGTGAGCTGATCGACATCCCCTGAATAATCCAATTAAGGAATTCTGCCAGATGGGTCACGTCACAGTGTGGC‑G‑GTATTTCCCcgcg < 2:8183437/137‑1 (MQ=255) aaaCGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCcgcg > 1:5688260/1‑140 (MQ=255) cGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCgcgcgc < 2:4467230/140‑1 (MQ=255) cGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCgcgcgc < 1:10399329/140‑1 (MQ=255) cGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGtt < 2:8616113/140‑1 (MQ=255) cGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGtt < 2:2157247/140‑1 (MQ=255) cGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGtt < 2:6353723/140‑1 (MQ=255) cGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATGAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGtt < 1:1817020/140‑1 (MQ=255) ttCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGa > 1:4502042/1‑140 (MQ=255) cAATCTGCATCAGTTTTTCCTGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATaaa < 2:7472577/140‑1 (MQ=255) aTCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATaaaaa < 1:6679068/140‑1 (MQ=255) tCAGTTTTTCCAGCGATGCACCTTCTCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACtgctgc < 2:9166715/140‑1 (MQ=255) tCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACtgctgc > 2:1940088/1‑140 (MQ=255) cAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCa < 1:3438632/140‑1 (MQ=255) tttttCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAg > 1:8107575/1‑140 (MQ=255) tttCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTg < 2:7244522/140‑1 (MQ=255) tttCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTg > 2:5782735/1‑140 (MQ=255) tttCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTg < 1:3598368/140‑1 (MQ=255) tttCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTg < 2:5156309/140‑1 (MQ=255) tttCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTg < 1:2334203/140‑1 (MQ=255) tCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTgcg < 1:6140689/140‑1 (MQ=255) aGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAACGTGCGctc < 2:11298654/140‑1 (MQ=255) gATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTg > 1:4317592/1‑140 (MQ=255) aTGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGc < 2:7755694/140‑1 (MQ=255) gCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCAt < 1:5288918/140‑1 (MQ=255) cACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATc > 1:8687156/1‑140 (MQ=255) cTTCGCGGGCGCTGATCGACATCACAGGAATACTCCTATTACGGAATTCTCCCAGAGTTGACACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCa < 2:1350138/140‑1 (MQ=255) cgTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCg > 2:1771626/1‑140 (MQ=255) cgTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCg > 1:5892594/1‑140 (MQ=255) cgTGCGATGATCGACATCCCCTGAATAATACAACTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAAATGCTGCAAAGTGCGCTCTTTCAGCGCATGGCg > 2:2619798/1‑140 (MQ=255) gcTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGAtt > 1:3021429/1‑140 (MQ=255) cTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGAttt < 1:392896/140‑1 (MQ=255) gATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCa < 1:8283504/140‑1 (MQ=255) gATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCa < 1:9846965/140‑1 (MQ=255) gATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCa < 1:5514477/140‑1 (MQ=255) aTCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCaa > 1:5130013/1‑140 (MQ=255) aCATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTa < 1:10841298/140‑1 (MQ=255) cATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTAt > 1:7070820/1‑140 (MQ=255) cccTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACAGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGc < 2:3573046/140‑1 (MQ=255) ccTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCg > 1:7875343/1‑140 (MQ=255) tGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGat < 2:2501144/140‑1 (MQ=255) tGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGat < 1:1984932/140‑1 (MQ=255) tGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGat < 1:5438660/140‑1 (MQ=255) tGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGat < 1:6197972/140‑1 (MQ=255) tGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGat < 1:321329/140‑1 (MQ=255) tGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGat < 1:292084/140‑1 (MQ=255) tGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGat > 1:2566995/1‑140 (MQ=255) tGAATAATACAATTAAGGAAGTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGat < 2:10701237/140‑1 (MQ=255) gAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGata < 1:8870117/140‑1 (MQ=255) ataCAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTcc < 1:4801434/140‑1 (MQ=255) ataCAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTcc < 2:3823348/140‑1 (MQ=255) ataCAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTcc < 1:10725551/140‑1 (MQ=255) ataCAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCGTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTcc < 2:4064171/140‑1 (MQ=255) taCAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCTCTTGTCGTTGACAAAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCt > 2:10182586/1‑140 (MQ=255) taCAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCt > 2:10507445/1‑140 (MQ=255) taCAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCt > 1:2216546/1‑140 (MQ=255) taCAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCt > 1:7566695/1‑140 (MQ=255) cagtacggAATTCTGCCCGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGaa < 2:10794690/134‑1 (MQ=255) ttAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATc > 2:3288274/1‑140 (MQ=255) ttAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATc < 2:4885937/140‑1 (MQ=255) ttAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATc > 2:5601897/1‑140 (MQ=255) ttAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATc > 2:6604909/1‑140 (MQ=255) ttAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATc > 1:1724912/1‑140 (MQ=255) ttAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATc < 1:841701/140‑1 (MQ=255) ttAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATc < 1:9053649/140‑1 (MQ=255) ttAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATc > 2:10072293/1‑140 (MQ=255) tAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCt < 2:8763271/140‑1 (MQ=255) tAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCt < 1:11304011/140‑1 (MQ=255) tAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCt < 1:940035/140‑1 (MQ=255) aaTTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGga < 2:9525187/140‑1 (MQ=255) ttCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGgaga < 2:11159788/140‑1 (MQ=255) ttCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGgaga < 1:1641736/140‑1 (MQ=255) ttCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGgaga > 2:6810094/1‑140 (MQ=255) ttCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCAGGGCGTGATGTCAACGTATTGGCGATATCTCCTGAATCTGGGgaga > 2:10340216/1‑140 (MQ=255) ttCTCCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑AGTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGgaga < 1:6010989/140‑1 (MQ=255) gtCTGCCAGATTTGTCACGTCACAGTGGGGC‑GTG‑ATTTCCCCGCTCGATGGTCGTTGACATAAAACCTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGgaga < 2:6144760/139‑1 (MQ=255) tGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAggg < 1:4395386/140‑1 (MQ=255) tGCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAggg < 2:7034609/140‑1 (MQ=255) gCCAGATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGggt < 2:2730822/140‑1 (MQ=255) gATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGgtggtg < 1:2119547/140‑1 (MQ=255) gATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGgtggtg < 1:919700/140‑1 (MQ=255) gATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGgtggtg < 1:11216379/140‑1 (MQ=255) gATGTGTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTACAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGgtggtg < 2:685777/140‑1 (MQ=255) tgtgTCACGTCACAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCa > 2:1104756/1‑140 (MQ=255) tcggtcacgtcacAGTGGGGCGG‑G‑ATGTCCCCGCGCGCTTGTCGTGGACATAAACACTGCTGCAAAGTGCGCTCTGGCATCGCATGGCGTGAGTTCAACGTATGGGCGATATCTCCTGAATCTGGGGAGAGTGTGGTGCa < 2:4222032/137‑1 (MQ=255) cacgtcacAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAgttgt < 2:3013237/140‑1 (MQ=255) acgtcacAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAgttgtt < 1:1410463/140‑1 (MQ=255) acgtcacAGTGGGGCGG‑G‑ATTTCCCCGCGCGCGTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAgttgtt < 2:8374746/140‑1 (MQ=255) cgtcacAGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAGttgttg > 2:5405335/1‑140 (MQ=255) aGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAGTTGTTGATCATg < 2:1591395/140‑1 (MQ=255) aGTGGGGCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAGTTGTTGATCATg > 1:6748267/1‑140 (MQ=255) ggggCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAGTTGTTGATCATGAag < 1:4043127/140‑1 (MQ=255) ggggCGG‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAGTTGTTGATCATGAag < 1:1029037/140‑1 (MQ=255) | CAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGC‑G‑G‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAGTTGTTGATCATGAAG > NZ_CP025268/1175310‑1175582 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |