| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,879,869 | (C)5→6 | pseudogene (521/821 nt) | nimR ← | DNA‑binding transcriptional regulator NimR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,879,864 | 1 | . | C | 98.0% | 1859.1 / 26.1 | 545 | pseudogene (526/821 nt) | nimR | DNA‑binding transcriptional regulator NimR |
| Reads supporting (aligned to +/- strand): ref base . (6/5); new base C (265/267); total (272/273) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.72e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01 | |||||||||||
Only 100 of 638 total aligned reads displayed.
CCTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑CCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGCGGG > NZ_CP025268/1879726‑1879998 | ccTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCGAAAAAGCCAGCCCATTGCACCAATG‑c > 2:6655568/1‑140 (MQ=255)ccTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑c > 2:1651279/1‑140 (MQ=255)ccTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑c > 2:11339220/1‑140 (MQ=255)ccTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑c > 2:10522375/1‑140 (MQ=255)ccTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑c > 1:3363187/1‑140 (MQ=255)ccTTTCACTAATCCCTGAAGCGCCATAATCAGCGGTAACGGCTGACGCCACTGGCGAAAACGCAACCCCGGCTCTTTTACTATCAGTCGGGCCAGATTGCGTTCACTCATCGCACAAAAGCCAGCCCATTGCCCCAATG‑c > 2:5191460/1‑140 (MQ=255) cTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑cc < 1:7399802/140‑1 (MQ=255) ttCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCACGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑cccc > 2:5358986/1‑140 (MQ=255) ttCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑cccc > 1:8463691/1‑140 (MQ=255) tCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACGATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑cccc‑c > 1:5889958/1‑140 (MQ=255) cACTAATCCCTGAAGCGCCCTAATCAGCTGAAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGGCGGGCAAGATTGCGTTCACTCATCGCACAAAAGCCCGCCCATTGCCCCACTG‑cccc‑cc > 2:7794559/1‑139 (MQ=255) cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑cccc‑cc > 2:2438793/1‑139 (MQ=255) cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑cccc‑cc > 2:3825146/1‑139 (MQ=255) cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑cccc‑cc > 2:7089085/1‑139 (MQ=255) cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑cccc‑cc > 1:2061103/1‑139 (MQ=255) cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTGTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑cccc‑cc > 2:1786920/1‑139 (MQ=255) cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGACTCTTTTACTATCAGTCGGGCAAGAGTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCACCAATG‑ccccac > 2:9163441/1‑138 (MQ=255) aCTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑cccc‑cca < 2:3184573/140‑3 (MQ=255) aTCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCg > 1:11158515/1‑140 (MQ=255) tCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGa > 2:3406815/1‑140 (MQ=255) tCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGa > 1:6646395/1‑140 (MQ=255) tGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAgg < 2:9524045/140‑1 (MQ=255) tGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTGTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAgg > 1:6368080/1‑140 (MQ=255) aGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGccc > 2:8151420/1‑140 (MQ=255) cgcCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCtt > 2:3974235/1‑140 (MQ=255) ccATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTc > 2:6291687/1‑140 (MQ=255) cATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGACCATTGCCCCAATGCCCCC‑CCCTCGACAGTCCCTTTCg < 2:1913679/140‑1 (MQ=255) aaaTCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGcc < 2:6076295/139‑1 (MQ=255) aagcAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTCTCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCca < 1:9663305/137‑1 (MQ=255) aaTCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCca < 2:11111101/140‑1 (MQ=255) aGCTGTAACTGCTGACGCCACTGGCGAACACTCAACCCCGTCTCTTTTACGAGCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCcatcat < 2:7919641/140‑1 (MQ=255) cTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCAtct > 1:5737207/1‑140 (MQ=255) cTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCAtct > 1:4723259/1‑140 (MQ=255) aCTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTccacc > 1:2831168/1‑140 (MQ=255) tgACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGt > 1:2222262/1‑140 (MQ=255) tgACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGt > 2:5421735/1‑140 (MQ=255) gACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTg < 1:5158286/140‑1 (MQ=255) gACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTg > 1:4422034/1‑140 (MQ=255) gACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTg < 1:7055900/140‑1 (MQ=255) gACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTg > 1:11239692/1‑140 (MQ=255) gACGCCACTGGCGAAAACTCAACCCCGTCTCTTGTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAACAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTg < 2:3538740/140‑1 (MQ=255) aCGCCACTGGCGACACCTCAACCCCGTCTCATTGACTATCAGTCGCGCAAGATTGCGTTCACTAATCGCAAAATAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGc < 2:1347182/140‑1 (MQ=255) aCGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGc < 2:4561343/140‑1 (MQ=255) aCGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACGATCAGTCGGGCAAGATAGCGTTCACTCATCGCAAAAACGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGc < 2:7628834/140‑1 (MQ=255) cGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCg > 2:21377/1‑140 (MQ=255) cGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCg > 1:9229211/1‑140 (MQ=255) gCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCgg > 2:7295682/1‑140 (MQ=255) tGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGAtttt < 2:3101555/140‑1 (MQ=255) tGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACGCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGAtttt > 1:8654285/1‑140 (MQ=255) cGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAgg > 1:9506400/1‑140 (MQ=255) cGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAgg < 1:8338532/140‑1 (MQ=255) cGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAgg > 1:10942962/1‑140 (MQ=255) aCTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATgag < 2:8760290/140‑1 (MQ=255) aCTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATgag < 1:6087616/140‑1 (MQ=255) aCTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATgag < 2:10629067/140‑1 (MQ=255) cGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACgg > 1:5429452/1‑140 (MQ=255) cGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACgg > 1:45664/1‑140 (MQ=255) tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGc < 2:2602923/140‑1 (MQ=255) tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGc < 2:4283494/140‑1 (MQ=255) tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGc < 2:7980922/140‑1 (MQ=255) tctcTTTGACGATCCGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCACTGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGc < 2:10308612/140‑1 (MQ=255) ttACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGc < 1:1001796/140‑1 (MQ=255) ttACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGc > 1:9052839/1‑140 (MQ=255) ttACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGc > 1:8848220/1‑140 (MQ=255) ttACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGc < 1:688516/140‑1 (MQ=255) aCTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAg < 2:10983033/140‑1 (MQ=255) tATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCt < 1:5571996/140‑1 (MQ=255) tATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCt < 1:4138183/140‑1 (MQ=255) aTCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtg < 1:764736/140‑1 (MQ=255) cAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgtt > 1:4947458/1‑140 (MQ=255) aGTCGGGCAATATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttg > 1:7751046/1‑140 (MQ=255) aGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttg > 1:2629716/1‑140 (MQ=255) ggCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTtgtg > 2:225653/1‑140 (MQ=255) ggCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTtgtg > 2:5953218/1‑140 (MQ=255) ggCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACACGACAGTCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACTGGCAGGTGAAGCTGTAGTtgtg > 2:6806147/1‑140 (MQ=255) gCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTgg > 1:6272985/1‑140 (MQ=255) cAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGgc < 2:9778123/140‑1 (MQ=255) cAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGgc < 1:3855059/140‑1 (MQ=255) cAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGgc < 1:9928593/140‑1 (MQ=255) ttGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGctgctg > 1:10609869/1‑140 (MQ=255) ttGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGctgctg > 2:5019102/1‑140 (MQ=255) gTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CAGTCGTCAGGCCCTTTCGCCATCCTCTCCACCCTCGTGCGGATTTTAGGCTGTGAAGAAGCGGGCTGGTGCAGCTGGTGTTGTGGCTGCgggggg > 2:8971476/1‑140 (MQ=255) ttCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGa < 1:1404015/140‑1 (MQ=255) cACTCATCGCAAAAAATCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGt < 2:4865380/140‑1 (MQ=255) aCTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGtt > 1:1740091/1‑140 (MQ=255) cTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTtc > 1:2449078/1‑140 (MQ=255) aTCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTtcatc > 2:4124572/1‑140 (MQ=255) tCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTtcatca > 1:4303262/1‑140 (MQ=255) tCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGGTGTGGCTGCTGAGGGAGTtcatca > 2:9261102/1‑140 (MQ=255) cAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAAc < 1:7883053/140‑1 (MQ=255) cAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAAc < 1:5271109/140‑1 (MQ=255) cAAAAAAGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAAc < 1:3527990/140‑1 (MQ=255) aaaaGCCAGCCCATTGCCCCAATG‑CCCCACACTCGACATGCCCTTTCGCCATCCTCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAgg < 2:7485091/140‑1 (MQ=255) aaGCCAGCCCATTGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGAc < 2:4420694/140‑1 (MQ=255) aTTGCCCCACTGCCCCC‑CCCTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAAt < 2:8561141/140‑1 (MQ=255) ttGCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATc < 1:4001048/140‑1 (MQ=255) gCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTg < 1:2996602/140‑1 (MQ=255) gCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTg > 1:9414035/1‑140 (MQ=255) gCCCCAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTg < 2:5673247/140‑1 (MQ=255) ccccAATGCCCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGc < 1:1043903/140‑1 (MQ=255) | CCTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑CCCC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGCGGG > NZ_CP025268/1879726‑1879998 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |