BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	2,204,490	(A)_7→8	pseudogene (175/3632 nt)	CXP41_RS11705 →	DUF4132 domain‑containing protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	2,204,483	1	.	A	95.5%	2209.5 / 78.5	604	pseudogene (168/3632 nt)	CXP41_RS11705	DUF4132 domain‑containing protein
Reads supporting (aligned to +/- strand): ref base . (12/15); new base A (248/325); total (261/343)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 640 total aligned reads displayed.

ATAACGCCCAACTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAG‑AA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGCCTGTATCGCG  >  NZ_CP025268/2204344‑2204617

  aaCGCCCAACTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTCTCACTGGAAGTCTCATCCAGACATTGGGTGATGACTTGCTACAAAAAGCTGAgaag‑aa                                                                                                                                         >  2:3008991/1‑140 (MQ=255)

     gCCCAACTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAG‑aa‑aaa                                                                                                                                     <  2:8335175/140‑1 (MQ=255)

      cccAACTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAG‑aa‑aaa‑a                                                                                                                                   >  1:7911304/1‑140 (MQ=255)

          acaggAACTGAAATAGAAAAAAGGCAAAACGACGCTCAGTCATCGTCGCTGGCCGGGCGACCCAGTGTCCGTTAACACTGGAAGACTCATCCAGACATTGGGTGATGAAATGCTACAAAAAGATGAGAAG‑aa‑aaa‑a‑aaca                                                                                                                              >  2:4888230/4‑137 (MQ=255)

          aCTGGACCTGAAATATAAAACAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAG‑aa‑aaa‑a‑aaca                                                                                                                              <  1:6903039/140‑4 (MQ=255)

          aCTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAG‑aa‑aaa‑a‑aaca                                                                                                                              <  1:9007859/140‑4 (MQ=255)

              gAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGt                                                                                                                           >  2:9046244/1‑140 (MQ=255)

              gAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGt                                                                                                                           <  1:7206580/140‑1 (MQ=255)

                aCTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCt                                                                                                                         >  2:2844756/1‑140 (MQ=255)

                        ataAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTAt                                                                                                                 >  1:195502/1‑140 (MQ=255)

                          aaaaaaGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATga                                                                                                               <  1:3785131/140‑1 (MQ=255)

                            aaaaGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATgaga                                                                                                             >  2:5207602/1‑140 (MQ=255)

                                   aaaaCGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTc                                                                                                      <  2:463176/140‑1 (MQ=255)

                                    aaaCGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCa                                                                                                     <  1:6063100/140‑1 (MQ=255)

                                    aaaCGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCa                                                                                                     >  1:9168772/1‑140 (MQ=255)

                                     accgccgcTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAACAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCAc                                                                                                    <  2:3212228/138‑1 (MQ=255)

                                     aaCGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCAc                                                                                                    <  2:9905931/140‑1 (MQ=255)

                                               cgTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAATGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCa                                                                                          <  2:10070253/139‑1 (MQ=255)

                                                  cATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTc                                                                                       >  1:5118755/1‑140 (MQ=255)

                                                   aTCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTcc                                                                                      >  1:2846253/1‑140 (MQ=255)

                                                    tcgtcgCTGGCCGGGCGAACCAGTGTCCGTTATCCCTGGAAGTCTCATCCAGACATGGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGGGGCAGTCCg                                                                                     <  2:7153581/140‑1 (MQ=255)

                                                    tcgtcgCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCg                                                                                     >  1:8785829/1‑140 (MQ=255)

                                                      gtcgCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGCAGTCTCATCCAGACATTGGGTGATGACTTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGcc                                                                                   <  2:1412342/140‑1 (MQ=255)

                                                       tcgCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAAGTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCa                                                                                  <  2:4263471/140‑1 (MQ=255)

                                                            ggCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACg                                                                             <  2:3386017/140‑1 (MQ=255)

                                                             gCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGc                                                                            <  1:6783934/140‑1 (MQ=255)

                                                              ccGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCa                                                                           <  2:3110197/140‑1 (MQ=255)

                                                               cGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAg                                                                          <  2:10415493/140‑1 (MQ=255)

                                                                 ggCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGc                                                                        >  1:340816/1‑140 (MQ=255)

                                                                 ggCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAAGTGCTACAAAAAGCTGAGAAG‑AACAAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGc                                                                        <  2:1666947/140‑1 (MQ=255)

                                                                  gCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGcc                                                                       >  2:5839751/1‑140 (MQ=255)

                                                                  gCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGcc                                                                       >  2:9778060/1‑140 (MQ=255)

                                                                  gCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGcc                                                                       >  1:10322240/1‑140 (MQ=255)

                                                                  gCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGcc                                                                       >  1:3189142/1‑140 (MQ=255)

                                                                   cGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGTTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGAGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCa                                                                      <  2:5402000/140‑1 (MQ=255)

                                                                   cGAACCAGGGTCCGTTATCACTGGAAGTCGCATCCCGACCTTGGGGGATGAAGTGCTCCAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGGCTGGCGTTCTGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCa                                                                      <  2:4988383/140‑1 (MQ=255)

                                                                           tgtCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGAGGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTg                                                              >  1:5288828/1‑140 (MQ=255)

                                                                            gtCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTc                                                                                       >  1:2541411/1‑114 (MQ=255)

                                                                            gtCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGa                                                             <  1:453585/140‑1 (MQ=255)

                                                                            gtCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGa                                                             <  1:5865854/140‑1 (MQ=255)

                                                                                gTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCgg                                                         >  1:3905329/1‑140 (MQ=255)

                                                                                  tATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACCTTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCAGCAACTTGATCGGCg                                                       >  2:1280629/1‑140 (MQ=255)

                                                                                  tATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCg                                                       <  1:9424225/140‑1 (MQ=255)

                                                                                  tATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCg                                                       <  2:6903295/140‑1 (MQ=255)

                                                                                     cACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAac                                                    >  1:8250091/1‑140 (MQ=255)

                                                                                      aCTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAaca                                                   <  1:5362945/140‑1 (MQ=255)

                                                                                       cTGTAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAG‑AA‑AAA‑ATACATTGTCTGGCGTTATTAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGACATCAACTTGATCGGCGAacac                                                  <  2:6649151/140‑1 (MQ=255)

                                                                                       cTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAacac                                                  >  1:1441754/1‑140 (MQ=255)

                                                                                         ggAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGNTCGGCGAACACaa                                                <  1:9709144/140‑1 (MQ=255)

                                                                                         ggAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACaa                                                <  1:4745393/140‑1 (MQ=255)

                                                                                              tctcATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCt                                           >  1:4332822/1‑140 (MQ=255)

                                                                                               ctcATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTc                                          >  1:11008210/1‑140 (MQ=255)

                                                                                                tcATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCa                                         >  2:9185456/1‑140 (MQ=255)

                                                                                                  aTCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAAt                                       >  2:7683173/1‑140 (MQ=255)

                                                                                                        aCATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAATCCCTCAATcccggc                                 >  2:9450078/1‑140 (MQ=255)

                                                                                                        aCATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATcccggc                                 >  1:8857013/1‑140 (MQ=255)

                                                                                                          aTTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATcccggccc                               >  1:3563629/1‑140 (MQ=255)

                                                                                                            tGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATcccggcccgg                             >  1:11150561/1‑140 (MQ=255)

                                                                                                            tGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATcccggcccgg                             >  1:8510889/1‑140 (MQ=255)

                                                                                                             gggTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGa                            >  1:1244391/1‑140 (MQ=255)

                                                                                                              ggTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGAc                           >  2:6213600/1‑140 (MQ=255)

                                                                                                                  atgaATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTTATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATg                       >  1:10632337/1‑140 (MQ=255)

                                                                                                                  atgaATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATg                       >  2:11163429/1‑140 (MQ=255)

                                                                                                                  atgaATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATg                       >  2:4391611/1‑140 (MQ=255)

                                                                                                                  atgaATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCAGCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATg                       >  2:6741848/1‑140 (MQ=255)

                                                                                                                   tgaATTGCTACACAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATgg                      <  1:6474641/140‑1 (MQ=255)

                                                                                                                   tgaATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATgg                      <  1:6305818/140‑1 (MQ=255)

                                                                                                                   tgaATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATgg                      <  1:2149749/140‑1 (MQ=255)

                                                                                                                   tgaATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATgg                      <  2:3767124/140‑1 (MQ=255)

                                                                                                                    gaATTGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATggc                     >  2:10991647/1‑140 (MQ=255)

                                                                                                                        tGCTACAACAAGCTGAGAAG‑AA‑AAACC‑ACCTTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACGTGATCGGCGAACCCAAACCCTCAATCCCGGCCCGGACAATGgcggcg                 <  2:10224890/140‑1 (MQ=255)

                                                                                                                        tGCTACAAAAAGCTGATAAGAAA‑AAA‑A‑ACCTTGTCGGGCGTTATGAGAATGTTTCACAGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg                 <  2:2676356/140‑1 (MQ=255)

                                                                                                                        tGCTACAAAAAGCTGAGCAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg                 <  2:7426677/140‑1 (MQ=255)

                                                                                                                        tGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGACCACAAACCCTCAATCCCGGCCCGGACAATGgcggcg                 <  2:10702082/140‑1 (MQ=255)

                                                                                                                        tGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACGCAAACCCTCAATCCCGGCCCGGACAATGgcggcg                 <  1:5520019/140‑1 (MQ=255)

                                                                                                                        tGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACACACCCTCAATCCCGGCCCGGACAATGgcggcg                 <  2:3606127/140‑1 (MQ=255)

                                                                                                                        tGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg                 <  1:10034190/140‑1 (MQ=255)

                                                                                                                        tGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg                 <  2:3985371/140‑1 (MQ=255)

                                                                                                                        tGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg                 <  1:10508789/140‑1 (MQ=255)

                                                                                                                        tGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg                 >  1:661605/1‑140 (MQ=255)

                                                                                                                        tGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg                 <  1:3963889/140‑1 (MQ=255)

                                                                                                                        tGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg                 <  1:7651710/140‑1 (MQ=255)

                                                                                                                        tGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg                 <  2:7923411/140‑1 (MQ=255)

                                                                                                                        tGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg                 <  1:8916236/140‑1 (MQ=255)

                                                                                                                        tGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg                 <  1:9569150/140‑1 (MQ=255)

                                                                                                                        tGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg                 <  2:7003005/140‑1 (MQ=255)

                                                                                                                        tGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg                 <  1:9936553/140‑1 (MQ=255)

                                                                                                                        tGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg                 >  1:4969023/1‑140 (MQ=255)

                                                                                                                        tGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg                 <  2:6003693/140‑1 (MQ=255)

                                                                                                                        tGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg                 <  2:196474/140‑1 (MQ=255)

                                                                                                                        tGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg                 <  2:210907/140‑1 (MQ=255)

                                                                                                                        tGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg                 <  1:1634996/140‑1 (MQ=255)

                                                                                                                        tGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAAGCCCGGCCCGGACAATGgcggcg                 <  2:2375936/140‑1 (MQ=255)

                                                                                                                        tGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCACCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg                 <  2:3281091/140‑1 (MQ=255)

                                                                                                                        tGCTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACAGTGTCTGGCGATATGAGAATTTTTCACTGGAGTGTCAGTCCGCCATCACGCAGGCCATCAACGTGATCGGCGAACACACACCCTCACTCCCGGCCCGGACCATGgcggcg                 >  2:8774938/1‑140 (MQ=255)

                                                                                                                        tGCTACAAAAAGCTGAGAAG‑AATATA‑A‑ACATTGTCTGGCGATCAGAGAATTTTTCGCGGGAGTGGCAGTCCGCAATCACGCAGGCCTGCAACTTGATCGGCGTACACGATGCCTCAATCCAGGCGGGGCCTATGgcggcg                 >  2:2263173/1‑140 (MQ=255)

                                                                                                                          cTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACaa                                                <  2:8249242/107‑1 (MQ=255)

                                                                                                                          cTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCt               <  1:1146327/140‑1 (MQ=255)

                                                                                                                          cTACAAAAAGCTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCt               >  2:2488607/1‑140 (MQ=255)

                                                                                                                                    cTGAGAAGAAA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCAATGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGCCTGTATc     >  2:8506643/1‑140 (MQ=255)

ATAACGCCCAACTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAG‑AA‑AAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGCCTGTATCGCG  >  NZ_CP025268/2204344‑2204617

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`