| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 2,790,767 | +C | pseudogene (349/2252 nt) | CXP41_RS24390 → | alpha‑amylase family glycosyl hydrolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 2,790,767 | 1 | . | C | 99.5% | 1318.8 / ‑1.0 | 377 | pseudogene (349/2252 nt) | CXP41_RS24390 | alpha‑amylase family glycosyl hydrolase |
| Reads supporting (aligned to +/- strand): ref base . (2/0); new base C (282/93); total (284/93) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.62e-01 | |||||||||||
Only 100 of 390 total aligned reads displayed.
TAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGAT‑A‑AATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAACATTCCTGACTATGAG > NZ_CP025268/2790628‑2790900 | taATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑a > 2:280214/1‑140 (MQ=255) aTGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑aca < 1:10585637/140‑3 (MQ=255) aTCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGACAGAAAAACATAGGTTTATCAACGAGAT‑acaatg > 1:531364/1‑135 (MQ=255) tCTGTTAAAAAACGATTATAATATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGa > 1:10125446/1‑140 (MQ=255) tCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGa > 2:1171886/1‑140 (MQ=255) aaaaaaCGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGaaa < 2:10790527/140‑1 (MQ=255) caTTATAACATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGa < 1:10697093/139‑1 (MQ=255) ataataAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGAt > 1:7669041/4‑140 (MQ=255) aTTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGAt > 1:5735643/1‑140 (MQ=255) aTTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGAt > 2:9045151/1‑140 (MQ=255) aTTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGAt > 2:8237554/1‑140 (MQ=255) aaTTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCg < 1:7103131/140‑1 (MQ=255) tttCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGgt > 1:8313849/1‑140 (MQ=255) tCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGgtgt > 2:5590744/1‑140 (MQ=255) tttCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTAt < 1:2681572/140‑1 (MQ=255) tttCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTAt < 2:1995099/140‑1 (MQ=255) cTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCt < 2:6233384/140‑1 (MQ=255) aCCGAGAGTTGAATAAAGCAGCACAGCGTATCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGgt < 2:8347665/116‑1 (MQ=255) aCCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGaa > 1:7376131/1‑140 (MQ=255) aCCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGaa > 1:1909897/1‑140 (MQ=255) aCCGAGAGTTGAATAAAGCAGCACAGCGTAGCAGTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGaa > 2:1890741/1‑140 (MQ=255) aCCGAGAGTTGAATAAAGCAGAACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATACCAGCGGTGTGTATCAGTATGGTCGTGCTGaa > 2:6003241/1‑140 (MQ=255) ccGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAAc > 1:3534275/1‑140 (MQ=255) ccGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAAc < 2:7441565/140‑1 (MQ=255) ttGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCAc < 2:1682901/140‑1 (MQ=255) ttGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCAc > 1:10956306/1‑140 (MQ=255) aaTAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCca > 2:5374132/1‑140 (MQ=255) agcagcACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGTAAAACATAGGTTTATCAACGAGAT‑ACCATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATta > 2:292150/1‑140 (MQ=255) agcagcACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATta > 2:8606744/1‑140 (MQ=255) cagcaCAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATtata > 2:8929075/1‑140 (MQ=255) cacaGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGCT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACAGTATAGCt > 1:8460642/1‑140 (MQ=255) cacaGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCCCCCACATTATATCt > 1:10023295/1‑140 (MQ=255) cacaGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCt > 2:10336408/1‑140 (MQ=255) cacaGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCt > 2:9796332/1‑140 (MQ=255) aacaGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAATCATAGGTTTATCAACGAGATCC‑AAGGATTGAAAGAGGTGATAAAAGCGGTGTTTATCAGTCTGGTCGTGCTGTCCATTTCACCCAACTTATATCt > 2:7547335/2‑140 (MQ=255) cGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACATTGATTGAAAGAGGTGAGAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTGCTCCCACAGGATATCTGACaa > 1:4086269/1‑140 (MQ=255) cGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGACAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATAATATCTGACaa > 2:11194015/1‑140 (MQ=255) cGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACaa > 2:3767359/1‑140 (MQ=255) cGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACaa > 2:512607/1‑140 (MQ=255) cGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACaa > 1:3124439/1‑140 (MQ=255) cGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACaa > 1:9842052/1‑140 (MQ=255) cGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGAGTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACaa > 2:4499447/1‑140 (MQ=255) tAGCATTACAGCGNCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACACTGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACNTTTCACCCACATTATATCTGACAAAc > 1:5934178/1‑140 (MQ=255) tAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAAc > 1:1334011/1‑140 (MQ=255) aGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAAcc < 1:3844750/140‑1 (MQ=255) aGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAAcc > 1:1833066/1‑140 (MQ=255) cATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCtt > 2:5695451/1‑140 (MQ=255) tACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTccc > 2:6587847/1‑140 (MQ=255) cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCg < 1:2265255/78‑1 (MQ=255) cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTCTGGTCGTGCTGAACATTTCACCCACAGTATATCTGACAAACCTTccccc > 2:7205919/1‑139 (MQ=255) cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa > 1:9958474/1‑140 (MQ=255) cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa > 2:3988607/1‑140 (MQ=255) cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa > 1:4823250/1‑140 (MQ=255) cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa > 2:9339213/1‑140 (MQ=255) cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa > 1:5135224/1‑140 (MQ=255) cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa > 1:4150731/1‑140 (MQ=255) cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAAGGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa > 2:1575137/1‑140 (MQ=255) cgcCAGACAGGATAGGAGAAAGAAAAGCATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCaaaa > 1:6458715/1‑140 (MQ=255) cgcCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCaaaa > 1:8099381/1‑140 (MQ=255) cgcCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCaaaa > 1:9651885/1‑140 (MQ=255) ccAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGa > 1:7903873/1‑140 (MQ=255) ccAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGa > 2:233906/1‑140 (MQ=255) ccAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGa > 2:4077071/1‑140 (MQ=255) gACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGaaa < 1:2990073/55‑1 (MQ=255) gACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATaa > 2:963350/1‑140 (MQ=255) gATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGTCAAACCTTACCCAAAAGATAAATATg > 2:10911717/1‑140 (MQ=255) gATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATg < 1:3754548/140‑1 (MQ=255) aTAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGt > 2:9516160/1‑140 (MQ=255) gagaAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCaaa < 1:403489/124‑1 (MQ=255) agaaagaaAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCat < 1:10407757/140‑1 (MQ=255) agaaagaaAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCat > 1:4454510/1‑140 (MQ=255) gaaagaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCata < 1:3327722/140‑1 (MQ=255) gaaagaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCata < 1:9777766/140‑1 (MQ=255) agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAg < 1:8980928/53‑1 (MQ=255) agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCata > 1:610248/1‑137 (MQ=255) agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc > 1:5564554/1‑140 (MQ=255) agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc > 1:1187020/1‑140 (MQ=255) agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc > 1:7181452/1‑140 (MQ=255) agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc > 1:282009/1‑140 (MQ=255) agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc > 2:1345278/1‑140 (MQ=255) agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc > 2:4812536/1‑140 (MQ=255) agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc > 2:2720825/1‑140 (MQ=255) agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc > 1:6174249/1‑140 (MQ=255) agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTGATCCGTATGGTCGTGCTGACCTTTTCACCCACAGTATATCGGACAAGGCTTCCCCCCAAGGTAGATTTGTTGGattggc > 2:7945280/1‑136 (MQ=255) gaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCt > 2:3184408/1‑140 (MQ=255) gaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCt < 1:1702923/140‑1 (MQ=255) aaCATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCAc < 2:4899892/84‑1 (MQ=255) aaCATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTa > 1:4718784/1‑140 (MQ=255) aaCATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTa < 2:432845/140‑1 (MQ=255) aCATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTaa < 1:6552752/140‑1 (MQ=255) cctacgattATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAAc < 2:10703663/133‑1 (MQ=255) ggTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAACATTc < 2:2105555/139‑1 (MQ=255) gTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAACATTcc > 2:7090698/1‑140 (MQ=255) gTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAACATTcc > 1:1440152/1‑140 (MQ=255) tATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAACa > 2:10212339/1‑133 (MQ=255) aTCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAACATTCCTGAc > 2:3575379/1‑140 (MQ=255) tCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAACATTCCTGACt > 2:22556/1‑140 (MQ=255) tCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAACATTCATGACt > 2:9700345/1‑140 (MQ=255) gagaT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAACATTCCTGACTATGAg > 1:1533625/1‑140 (MQ=255) gagaT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAACATTCCTGACTATGAg > 2:3463797/1‑140 (MQ=255) | TAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGAT‑A‑AATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAACATTCCTGACTATGAG > NZ_CP025268/2790628‑2790900 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |