| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 3,864,439 | +C | pseudogene (1083/1613 nt) | CXP41_RS20140 ← | PTS sugar transporter subunit IIB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 3,864,437 | 1 | . | C | 99.0% | 2077.6 / 9.5 | 601 | pseudogene (1085/1613 nt) | CXP41_RS20140 | PTS sugar transporter subunit IIB |
| Reads supporting (aligned to +/- strand): ref base . (2/4); new base C (323/271); total (326/275) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.20e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 644 total aligned reads displayed.
GCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCC‑G‑CCATGTT‑‑‑CACC‑ACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCAT > NZ_CP025268/3864298‑3864567 | gCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATGTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑g > 1:9088779/1‑140 (MQ=255) cAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑G‑c > 1:4191373/1‑140 (MQ=255) cAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑G‑c < 1:2935197/140‑1 (MQ=255) gAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑G‑ccc > 1:6337358/1‑139 (MQ=255) gAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑G‑ccc < 1:3388070/140‑2 (MQ=255) tCAGTGTGCGGAAAACCACGAAGTACNGCAGGGTNAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGNCAATCAGACCTCC‑G‑cccatg < 1:5917322/140‑5 (MQ=255) aGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGtt > 2:11013157/1‑140 (MQ=255) gtgtGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGAGTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCACTCAGACCTCC‑GCCCATGTTg > 2:690465‑M1/1‑139 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccac > 2:1929827‑M1/1‑134 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccac < 1:3286491‑M1/140‑7 (MQ=255) ggAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccacc < 1:9283110‑M1/140‑8 (MQ=255) gAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccacca < 2:1446285‑M1/140‑9 (MQ=255) aCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTCAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacacc > 2:2262592‑M1/1‑128 (MQ=255) ccACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacacca < 2:6524586‑M1/140‑14 (MQ=255) ccACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacacca < 2:4516469‑M1/140‑14 (MQ=255) cagTACATCAGGTTAAAGCACAACCCAATCGCGATTTCGGTCCGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTATGCGGTAACACCTAGTCAATCAGACCTCCTC‑CCATGTTgcccaccacaccaaagag < 2:9087159‑M1/139‑19 (MQ=255) aaGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagag < 2:3957151‑M1/140‑19 (MQ=255) aGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagaga < 1:8007798‑M1/140‑20 (MQ=255) tACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAATCCTAGTCAATCAGACCTCC‑GACCATGTTgcccaccacaccaatgagatc > 2:8822777‑M1/1‑119 (MQ=255) agcagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacat > 2:7953906‑M1/1‑116 (MQ=255) agcagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacat > 2:290095‑M1/1‑116 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatccattacgg > 2:3191742‑M1/1‑111 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtc < 1:2319062‑M1/140‑32 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtc > 1:3965520‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtc > 1:8525465‑M1/1‑109 (MQ=255) aGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgac > 2:8154187‑M1/1‑106 (MQ=255) aGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgac > 1:4799148‑M1/1‑106 (MQ=255) aGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgac > 2:1009770‑M1/1‑106 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAATCCTAGTCAATCAGACCTCC‑GCCCATGGTgcccaccacaccaaagagatacattacggtcgacattga > 1:7576068‑M1/1‑101 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattga > 1:9913531‑M1/1‑101 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattga > 1:368999‑M1/1‑101 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGATgcccaccacaccaaagagatacattacggtcgacattga > 1:4992140‑M1/1‑101 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATCTCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgag < 1:11148361‑M1/140‑41 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgag < 1:9452240‑M1/140‑41 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgag < 1:3090068‑M1/140‑41 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgag < 2:5746718‑M1/140‑41 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCTTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgagg > 2:3741152‑M1/1‑99 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgagg > 2:10394944‑M1/1‑99 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCCCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaatgagatacattacggtcgacattgagg > 2:2067211‑M1/1‑99 (MQ=255) aaTGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccg > 1:791069‑M1/1‑96 (MQ=255) aaTGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccg < 2:8461417‑M1/140‑45 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgcc > 2:240430‑M1/1‑94 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagaganacattacggtcgacattgaggccgcc > 1:6793087‑M1/1‑94 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc > 1:4637996‑M1/1‑91 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:4839204‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:8322843‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:1534845‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:10506575‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:1029234‑M1/140‑50 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccatagtgatacattacggtcgacattgaggccgccagcac > 2:9524029‑M1/1‑89 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 1:6275226‑M1/1‑89 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 2:2647582‑M1/1‑89 (MQ=255) tttGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacg < 1:2993617‑M1/140‑53 (MQ=255) tttGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacg > 2:1061083‑M1/1‑88 (MQ=255) tGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggc < 2:3465832‑M1/140‑55 (MQ=255) ggTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgt < 1:9631500‑M1/140‑57 (MQ=255) ggTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgt < 2:665293‑M1/140‑57 (MQ=255) catcatATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccg > 2:3365033‑M1/1‑78 (MQ=255) catcatATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccg > 1:10799813‑M1/1‑78 (MQ=255) tCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacag < 1:5673381‑M1/140‑70 (MQ=255) cgcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagca < 1:194854‑M1/140‑72 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 1:8673408‑M1/1‑68 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaac > 1:6593749‑M1/1‑67 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaac > 1:5256990‑M1/1‑67 (MQ=255) gTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacg < 1:2612105‑M1/140‑75 (MQ=255) gTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacg < 1:4524366‑M1/140‑75 (MQ=255) gTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacg < 2:1565534‑M1/140‑75 (MQ=255) gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtg > 1:2078278‑M1/1‑63 (MQ=255) gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtg < 1:890279‑M1/140‑78 (MQ=255) gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtg < 2:5911394‑M1/140‑78 (MQ=255) cTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaat < 1:732593‑M1/140‑82 (MQ=255) tCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg > 2:8539822‑M1/1‑52 (MQ=255) tCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattaaggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg > 2:9318898‑M1/1‑52 (MQ=255) cgtgatcCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATTTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagga < 2:6280356‑M1/137‑90 (MQ=255) cGGGATCCAGTTTTGCTGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgccaaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagga < 2:8363757‑M1/140‑90 (MQ=255) cGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagga > 1:6989566‑M1/1‑51 (MQ=255) cGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagga > 2:4317382‑M1/1‑51 (MQ=255) ggATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaag > 2:5059177‑M1/1‑49 (MQ=255) tCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggta > 2:6158579‑M1/1‑46 (MQ=255) aGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaat > 2:5457021‑M1/1‑43 (MQ=255) tGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccag > 2:4426031‑M1/1‑38 (MQ=255) ggCGGTAAAACCTAGTCAATAAGACCTCC‑GCCCATGTTGC‑CCCCGACACCAATGAGAGACCTTACGGTGGAGGTTGAGGCCGCCAGCACGGCGGGTACCGGGCACCGCAACGGTGTACTGAACAGGGAGGTCAATTcagg > 2:7414129/2‑137 (MQ=255) ggTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacgtcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 1:285853‑M1/140‑106 (MQ=255) ggTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 1:10975300‑M1/140‑106 (MQ=255) ggTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 2:6337358‑M1/140‑106 (MQ=255) ggTAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 1:1174358‑M1/140‑106 (MQ=255) tAAAACCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggtt < 2:3063498‑M1/140‑108 (MQ=255) aaCCTAGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcgg < 1:4426183‑M1/140‑111 (MQ=255) cctagTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggta < 1:4123755‑M1/138‑113 (MQ=255) ctAGTCAAGCAGACCTCC‑GCCCATGTTGCCCTCC‑ACACCACAGAGTTACTTTACGGTCGACATTGAGGCCGCCAGCCCGGCGTGTACCGCAAACAGCAACGGTGATATGAAAAGGTAGGTAAATTCGAGCGGTTCGGTaa < 2:412519/139‑1 (MQ=255) aGTCAATCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaatt < 2:7564532‑M1/140‑116 (MQ=255) aTCAGACCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccac < 2:1234421‑M1/140‑121 (MQ=255) ccctCC‑GCCCATGGTgcccaccacacccaagagatacattacggtcgaccttgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagca < 2:10746533‑M1/139‑126 (MQ=255) aCCTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagca < 1:10024926‑M1/140‑126 (MQ=255) ccTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcat < 2:7287524‑M1/140‑127 (MQ=255) cTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcatg < 1:1706258‑M1/140‑128 (MQ=255) cTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcatg < 1:5489058‑M1/140‑128 (MQ=255) cTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcatg < 1:3551307‑M1/140‑128 (MQ=255) cTCC‑GCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcatg < 2:11256905‑M1/140‑128 (MQ=255) cTCC‑GCCCATGTTgcccaccacaccaaagagagacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcatg < 1:11233079‑M1/140‑128 (MQ=255) | GCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCC‑G‑CCATGTT‑‑‑CACC‑ACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCAT > NZ_CP025268/3864298‑3864567 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |