BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP025268	695911 =	0 (0.000)	334 (0.550) +GAAGAAACAATC	52/252	4.6	53.2%	intergenic (‑33/+2)	CXP41_RS03680/CXP41_RS03685	tRNA‑Gln/tRNA‑Gln
*	?	NZ_CP025268	= 696182	644 (0.970)	334 (0.550) +GAAGAAACAATC	52/252	4.6	53.2%	intergenic (‑1/+379)	CXP41_RS03695/asnB	tRNA‑Met/asparagine synthase B
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 648 total aligned reads displayed.

CTTGCGGCGCCAGAACCTAAATCTGGTGCGTCTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGTGGCGCTATATTCG  >  NZ_CP025268/696043‑696321

cTTGCGGCGCCAGAACCTAAATCTGGTGCGTCTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCa                                                                                                                                              >  1:8773871/1‑140 (MQ=255)

  tGCGGCGCCAGAACCTAAATCTGGTGCGTCTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATc                                                                                                                                            >  1:9971736/1‑140 (MQ=255)

  tGCGGCGCCAGAACCTAAATCTGGTGCGTCTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATc                                                                                                                                            >  1:7134880/1‑140 (MQ=255)

  tGCGGCGCCAGAACCTAAATCTGGTGCGTCTACCAAATTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCCTc                                                                                                                                            >  2:5468599/1‑140 (MQ=255)

         ccAGAACCTAAATCTGGTGCGTCTACCAAATTCGCCACTCCCGCTACAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTTCGTAGCCATC‑ttttttt                                                                                                                                    <  2:5108607/140‑1 (MQ=255)

              aCCTAAATCTGGTGCGTCTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTcgcg                                                                                                                               <  2:9263806/140‑1 (MQ=255)

               ccTAAATCTGGTGCGTCTACCAATTTCGCCACTCCAGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGa                                                                                                                              <  2:9068200/140‑1 (MQ=255)

                   aaTCTGGTGCGTCTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATAcc                                                                                                                          >  2:150028/1‑140 (MQ=255)

                   aaTCTGGTGCGTCTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATAcc                                                                                                                          >  1:4898450/1‑140 (MQ=255)

                          tGCGTCTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCCACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCgg                                                                                                                   >  2:3811375/1‑140 (MQ=255)

                           gCGTCTACCCATTTCGCCACTCCCGCAAAAAAAGAGGGTGGCTACGACGGGATTCGAACCTGTGACCCCCTCATTATGAGTGATGTGCG‑‑‑‑‑CTAACCCACTGAGCTACGTCGCCATC‑TTTTTGTTCGCGATACCTGCTCGGc                                                                                                                  >  2:10122902/1‑140 (MQ=21)

                              tCTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGtt                                                                                                               <  2:4300690/140‑1 (MQ=255)

                               cTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCCTCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTCTTTCGCGATACCTTATCGGCGTTg                                                                                                              <  2:7291533/140‑1 (MQ=255)

                                  cccatcgcgccccgcccGCAAAAAAAGCTGGTTGCTCCGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCgg                                                                                                           <  1:10253305/133‑1 (MQ=21)

                                  ccAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCgg                                                                                                           <  1:44739/140‑1 (MQ=255)

                                    aaTTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCgggg                                                                                                         <  2:532467/140‑1 (MQ=255)

                                      tttCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGgcg                                                                                                       <  1:6930499/140‑1 (MQ=255)

                                         cGCCACTCTCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCAt                                                                                                    <  2:5877506/140‑1 (MQ=255)

                                         cGCCACTCCCGCAAAAAAATATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGAGACCTTATCGGCGTTGCGGGGCGCAt                                                                                                    <  2:11242328/140‑1 (MQ=255)

                                         cGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCAt                                                                                                    <  1:1640467/140‑1 (MQ=255)

                                         cGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCAt                                                                                                    <  2:7238543/140‑1 (MQ=255)

                                         cGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCAt                                                                                                    >  2:8745699/1‑140 (MQ=255)

                                         cGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCAt                                                                                                    <  1:8590461/140‑1 (MQ=255)

                                         cGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCGTATCGGCGTTGCGGGGCGCAt                                                                                                    <  1:10344242/140‑1 (MQ=255)

                                            cACTCCCGCAACAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTTCGGGGCGCATTAt                                                                                                 <  2:6606144/140‑1 (MQ=255)

                                            cACTCCCGCAACAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTAt                                                                                                 <  2:2060679/140‑1 (MQ=255)

                                            cACTCCCGCAAAATAATATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTAt                                                                                                 <  1:5868335/140‑1 (MQ=255)

                                            cACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTAt                                                                                                 <  2:1679580/140‑1 (MQ=255)

                                            cACTCCCGAAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTAt                                                                                                 <  1:8048885/140‑1 (MQ=255)

                                              cTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGc                                                                                               <  1:1839717/140‑1 (MQ=255)

                                                 ccGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGta                                                                                            <  1:5735170/140‑1 (MQ=255)

                                                   gCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGtata                                                                                          <  1:3125960/140‑1 (MQ=255)

                                                     aaaaaaaGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATaga                                                                                        <  1:7755284/140‑1 (MQ=255)

                                                      aaaaaaGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATagag                                                                                       <  1:9572330/140‑1 (MQ=255)

                                                      aaaaaaGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATagag                                                                                       <  1:3634492/140‑1 (MQ=255)

                                                         aaaGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCt                                                                                    >  2:3160835/1‑140 (MQ=255)

                                                           aGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTg                                                                                  <  1:3440718/140‑1 (MQ=255)

                                                               ggtggCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGgcgc                                                                                                      >  2:7507770/1‑121 (MQ=21)

                                                                 tggCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGt                                                                            >  2:10498381/1‑140 (MQ=255)

                                                                                       tgtgACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAAt                                                      >  1:4381294/1‑140 (MQ=255)

                                                                                        gtgACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAAtt                                                     >  1:6266671/1‑140 (MQ=255)

                                                                                         tgACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTg                                                    >  2:8431116/1‑140 (MQ=255)

                                                                                          gACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGc                                                   <  1:10792435/140‑1 (MQ=255)

                                                                                            ccccATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTc                                                 <  1:789766/140‑1 (MQ=255)

                                                                                                atcatTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGaaa                                             >  2:7028073/1‑140 (MQ=255)

                                                                                                atcatTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGaaa                                             >  1:8183442/1‑140 (MQ=255)

                                                                                                atcatTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGaaa                                             >  2:9546983/1‑140 (MQ=255)

                                                                                                 tcatTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAg                                            >  1:7558335/1‑140 (MQ=255)

                                                                                                    ttATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGa                                         <  2:9891219/140‑1 (MQ=255)

                                                                                                    ttATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGa                                         <  1:6735172/140‑1 (MQ=255)

                                                                                                     tATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGAc                                        <  1:4141731/140‑1 (MQ=255)

                                                                                                     tATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGAc                                        <  1:11304350/140‑1 (MQ=255)

                                                                                                       tGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTg                                      >  2:6161677/1‑140 (MQ=255)

                                                                                                       tGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGGAGCCATC‑TTTTTTTTCGCGAGACCTGATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTg                                      <  2:1380654/140‑1 (MQ=255)

                                                                                                         aGTGATGTGCT‑‑‑‑‑CTAACCAACTGCGCTACGTAGCCATC‑TTTTTTGTCGCGATACCTTATCGGCGTTGGGGGGAGCATTATGCGTATAGAGCCTTGCAGCGTCCACCTCTTTTTCAAGGAAAATAGCGCGAAAGTGAcgggt                                    >  2:5695086/1‑136 (MQ=255)

                                                                                                         aGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGtt                                    <  2:4115900/140‑1 (MQ=255)

                                                                                                           tGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACtgtgtg                                  >  1:4209394/1‑140 (MQ=255)

                                                                                                             aTGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCCTC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGt                                >  1:2096866/1‑140 (MQ=255)

                                                                                                             aTGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGaaaa                                                       >  2:1078233/1‑117 (MQ=255)

                                                                                                             aTGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGt                                >  2:7733000/1‑140 (MQ=255)

                                                                                                             aTGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGt                                >  1:10683963/1‑140 (MQ=255)

                                                                                                             aTGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGt                                >  1:1317120/1‑140 (MQ=255)

                                                                                                             aTGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGt                                >  2:2479144/1‑140 (MQ=255)

                                                                                                              tgtgCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGtt                               <  2:7854859/140‑1 (MQ=255)

                                                                                                              tgtgCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGtt                               <  2:5991797/140‑1 (MQ=255)

                                                                                                              tgtgCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGtt                               <  1:2640684/140‑1 (MQ=255)

                                                                                                              tgtgCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGtt                               >  1:6561140/1‑140 (MQ=255)

                                                                                                              tgtgCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGtt                               >  2:10474304/1‑140 (MQ=255)

                                                                                                               gtgCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTGTGGTTa                              >  2:8153607/1‑140 (MQ=255)

                                                                                                                tgCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAg                             <  2:4882211/140‑1 (MQ=255)

                                                                                                                   t‑‑‑‑‑ctAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTCTCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTGTGGTTAGGtt                          >  2:1071660/1‑140 (MQ=255)

                                                                                                                   t‑‑‑‑‑ctAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGtt                          <  1:8338728/140‑1 (MQ=255)

                                                                                                                   t‑‑‑‑‑ctAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGtt                          <  1:10939616/140‑1 (MQ=255)

                                                                                                                          tAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGc                        >  2:5190159/1‑140 (MQ=255)

                                                                                                                           aaCCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCg                       <  2:10983410/140‑1 (MQ=255)

                                                                                                                            aCCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCTCATTATGCGTCTAGAGCCTTGCAGCGGCAACCTCTTTTTCCAGGAAAATTGCTCGACAGTGACTGTGTGGTTAGGTTGCGa                      >  2:2831326/1‑140 (MQ=255)

                                                                                                                            aCCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGa                      >  1:5277897/1‑140 (MQ=255)

                                                                                                                             ccAACTGCGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTGGGTTAGGTTGCGaa                     <  1:6430079/140‑1 (MQ=255)

                                                                                                                             ccAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGTAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGaa                     <  2:691741/140‑1 (MQ=255)

                                                                                                                             ccAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGaa                     <  1:2878982/140‑1 (MQ=255)

                                                                                                                             ccAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGaa                     >  2:2696917/1‑140 (MQ=255)

                                                                                                                               aaCTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTgg                                 <  2:3537396/126‑1 (MQ=255)

                                                                                                                                 cTGAGCTACGTAGCCATCTTTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAg                  >  2:3337935/1‑140 (MQ=255)

                                                                                                                                 cTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGc                 >  2:195813/1‑140 (MQ=255)

                                                                                                                                 cTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTGTGGTTAGGTTGCGAACAGc                 >  1:4675563/1‑140 (MQ=255)

                                                                                                                                  tGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCg                >  1:11171135/1‑140 (MQ=255)

                                                                                                                                  tGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCg                <  2:2355475/140‑1 (MQ=255)

                                                                                                                                  tGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCg                <  1:1940579/140‑1 (MQ=255)

                                                                                                                                    aGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCCACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGTg              >  1:8971903/1‑140 (MQ=255)

                                                                                                                                    aGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGa                                         >  1:10025962/1‑113 (MQ=255)

                                                                                                                                    aGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGTg              >  1:7487631/1‑140 (MQ=255)

                                                                                                                                    aGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGTg              >  2:7593674/1‑140 (MQ=255)

                                                                                                                                      cTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGTGgc            >  1:3980904/1‑140 (MQ=255)

                                                                                                                                       tACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGTGgcg           <  1:9331359/140‑1 (MQ=255)

                                                                                                                                       tACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGTGgcg           <  2:10312397/140‑1 (MQ=255)

                                                                                                                                       tACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGTGgcg           <  1:10733345/140‑1 (MQ=255)

                                                                                                                                       tACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGTGgcg           <  1:2281788/140‑1 (MQ=255)

                                                                                                                                         cGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGTGGCGCt         >  1:3029540/1‑140 (MQ=255)

                                                                                                                                           tAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGTGGCGCtat       >  1:3859544/1‑140 (MQ=255)

                                                                                                                                           tAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGTGGCGCtat       >  2:4514119/1‑140 (MQ=255)

CTTGCGGCGCCAGAACCTAAATCTGGTGCGTCTACCAATTTCGCCACTCCCGCAAAAAAAGATGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCT‑‑‑‑‑CTAACCAACTGAGCTACGTAGCCATC‑TTTTTTTTCGCGATACCTTATCGGCGTTGCGGGGCGCATTATGCGTATAGAGCCTTGCAGCGTCAACCTCTTTTTCAAGGAAAATTGCTCGAAAGTGACTGTTTGGTTAGGTTGCGAACAGCGTGGCGCTATATTCG  >  NZ_CP025268/696043‑696321

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.