BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,292,991	0	C	T	65.9%	304.2 / 263.4	320	noncoding (46/132 nt)	CXP41_RS06835	RtT sRNA
Reads supporting (aligned to +/- strand): ref base C (21/81); new base T (104/93); total (141/179)
Fisher's exact test for biased strand distribution p-value = 7.32e-08
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 326 total aligned reads displayed.

GCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTT  >  NZ_CP025268/1292852‑1293126

tcagatgatTTGATGTCTGATTAGTTTGAGTATTCGGGTTCTTTTGCAAGAGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGc                                                                                                                                          <  2:6793273/133‑1 (MQ=11)

      tatTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCACAGCTCTCTCGGTGGCGCTACAGTCGAAcc                                                                                                                                    >  1:7411648/1‑140 (MQ=11)

         ttGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTGGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGACGAACCTTa                                                                                                                                 >  1:439115/1‑140 (MQ=255)

         ttGATTGCGGACTCGCTTGAGAGTTCAGGGACTTTTGAAAGGGATGGGGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCttg                                                                                                                                 >  2:4859716/1‑139 (MQ=11)

           gATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTagt                                                                                                                               <  2:9263329/140‑3 (MQ=255)

           gATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCGCGAGTCGGACCttggt                                                                                                                               >  1:10850574/1‑137 (MQ=11)

              tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTTAGCCCATCACACTTCTGAACGATGCCTGTGGCAAAGTTATCTCGCTTACTCTCGAGACGAACAATAGTCGa                                                                                                                            >  2:9155584/1‑140 (MQ=9)

              tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGTCGAACCTTAGTCGa                                                                                                                            >  1:3947597/1‑140 (MQ=255)

              tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                                            <  2:7405714/140‑1 (MQ=255)

              tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCACCGCTGCGCGCTTCGCCCAACGGGTCGATGCATGCGGCAACGCACACTCGCTGACGCTCGAGCCGAACCTTCGTCGa                                                                                                                            >  2:4178620/1‑140 (MQ=14)

               tcGGATTCGTTTGAGTATTCCGTGTCTTTTGGAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGaa                                                                                                                           <  2:2847342/139‑1 (MQ=14)

                cGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGTGGCAACGTTCTCTCGCTTTCGCTCGAATCGAACCTTAGTCGAAg                                                                                                                          >  2:6572103/1‑140 (MQ=14)

                cGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAg                                                                                                                          <  1:2291528/140‑1 (MQ=255)

                    ttCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTtc                                                                                                                      <  1:6250606/140‑1 (MQ=255)

                       gtttGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCa                                                                                                                   <  2:578916/138‑1 (MQ=255)

                        tttGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCAt                                                                                                                  <  2:8067535/139‑1 (MQ=255)

                        tttGAGAATTCCGGGGCCGTTGAAAGTGATGGTGGTGTGGGAAGGATTAGTCTGCTCTGCGAGATTAGCATTTGTGTTAGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCAt                                                                                                                  <  2:10334749/139‑1 (MQ=14)

                        ttagagcATTCCTGGTCTTTTGTAAGGGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCAt                                                                                                                  <  1:11310738/137‑1 (MQ=11)

                         ttGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGACGAACCTTAGTCGAAGGTTCTCacc                                                                                                                 <  2:5396394/140‑3 (MQ=255)

                          tGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGACGAACCTTAGTCGAAGCTTCTCATcc                                                                                                                >  2:4026474/1‑140 (MQ=255)

                             gaATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTc                                                                                                             <  1:10511425/140‑1 (MQ=255)

                             gaATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTc                                                                                                             <  1:10214851/140‑1 (MQ=255)

                             gaATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTc                                                                                                             <  1:5037102/140‑1 (MQ=255)

                                 tCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCCGCGCTGCGCGCATCGCCCTTCGGGTCGTTGCCTGAGGCAACGATCTCTCGCTGACGCTCGAGGCGAACCTTATTCGAAGCTTCTCAACCGTCCCCg                                                                                                         >  1:7198779/1‑140 (MQ=11)

                                  ccGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGTGACGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGc                                                                                                        >  2:6627014/1‑140 (MQ=255)

                                   cGGGGCTTTTGCAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCa                                                                                                       <  1:7158200/140‑1 (MQ=25)

                                    ggggCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCA‑t                                                                                                     <  2:1055827/140‑1 (MQ=21)

                                    ggggCTATTGTTAGTGATGTTGGTGGGGCAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCA‑t                                                                                                     <  1:9329266/140‑1 (MQ=11)

                                     gggCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCA‑Tg                                                                                                    <  2:8979692/140‑1 (MQ=21)

                                     gggCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGAGCTGCGCGCTTCGCCCTACGTGTCGTTGCATGTGGCAACGGTCTCTCGCTTACGCACGACACGAACCTTAGTCGACTCGTCTCAACCTTCCCCGctgt                                                                                                     >  1:5869469/1‑137 (MQ=11)

                                       tcTTTTGTAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCA‑Tggg                                                                                                  <  2:162259/139‑1 (MQ=12)

                                       gCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCTAGCCGAACCTTAGTCGAAGATTCTCATCCTTCCCCGCA‑Tggg                                                                                                  <  1:6530402/140‑1 (MQ=16)

                                       gCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCA‑Tggg                                                                                                  <  2:11265384/140‑1 (MQ=18)

                                       gCTTTTGAAAGTGATGGTGGGGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCA‑Tggg                                                                                                  <  1:10273577/140‑1 (MQ=18)

                                         ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCa                                                                                                <  2:7019181/140‑1 (MQ=17)

                                         ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCa                                                                                                <  2:3330638/140‑1 (MQ=17)

                                         tattGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGAAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCa                                                                                                <  2:7270926/138‑1 (MQ=12)

                                            tgtaaGGGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGaa                                                                                             <  2:1237949/137‑1 (MQ=12)

                                                  tGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATCtttg                                                                                       >  2:4414222/1‑139 (MQ=9)

                                                                gAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGtt                                                                         <  1:3437517/140‑1 (MQ=255)

                                                                 aaGGATTACTCAGAGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCGGCGGCAACGCTCTCTAGCTGTCGCTCGACTCGAACCTATGTCGAAGCTTATCAACCTTCACCGCA‑ACGGCAGAATATTTAAATTCGGATTAGttt                                                                        >  2:6872849/1‑139 (MQ=11)

                                                                  aGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTCGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTgg                                                                       <  1:10732042/140‑1 (MQ=11)

                                                                   ggATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTggg                                                                      <  1:2375060/140‑1 (MQ=255)

                                                                    gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGa                                                                     <  1:6627014/140‑1 (MQ=255)

                                                                    gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGAGTCGTTGGGa                                                                     <  2:10632183/140‑1 (MQ=11)

                                                                         cTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTc                                                                >  2:11152403/1‑140 (MQ=255)

                                                                           cAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGAATCGTGGGGAAGGTCAg                                                              >  2:8293576/1‑140 (MQ=11)

                                                                           cAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTATCGCTGGCGCTCGAGTCGAAACGTGGTCGAAGCTTCTCATACTTACCCGCA‑TTGGCAGAATATTTAATTTCGGATTCGTTTGGAAGTTAAg                                                              >  2:2399161/1‑140 (MQ=11)

                                                                            aGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCTAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCT‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAgg                                                             <  2:2267053/140‑1 (MQ=14)

                                                                            aGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAgg                                                             <  1:2970171/140‑1 (MQ=255)

                                                                              cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCCGAATATTTAATTGCGGATTGGTTGGGAAGTTCAGGGa                                                           >  2:5018569/1‑140 (MQ=14)

                                                                              cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGa                                                           >  2:10885847/1‑140 (MQ=255)

                                                                              cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCATCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGa                                                           >  1:9425016/1‑140 (MQ=14)

                                                                              cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCGTGGTCGAAGCTTCAAATCCCTCCCCGCC‑GTGGCAGAATTGTTTATTGGGGATTGGTTGGGTAGTTCAtggg                                                           >  1:901429/1‑139 (MQ=2)

                                                                                   cgcgcTTCGCCCTTCGGGTCGTTGCCTGGGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑GGGGGGGGAGATTTAATTGCGGATTCGGTGGGAAGGTGAGGGCCgttt                                                      >  1:7509141/1‑140 (MQ=11)

                                                                                   cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCAAACTTCCCCGCA‑TGGGCAGAAAATTTAATTGCGGATTCGTTTGGACGTTGCGGGACgttg                                                      >  2:3100318/1‑139 (MQ=11)

                                                                                   cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCGCATCCTTCCCCGCA‑TGGGCAGTATATTTATTTGCGGATTCGTTGGGAAGTGAAGGGAcgtgt                                                      >  2:9520490/1‑136 (MQ=14)

                                                                                     cgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGa                                                    <  2:3954176/140‑1 (MQ=255)

                                                                                     cgcTTCGCCCTTCGGGTCGTAGCCTGCGGCAACGCACTCTCGCTGGCGCTCGAGGAGATCCGTGTTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGa                                                    <  2:4627638/140‑1 (MQ=14)

                                                                                       cTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCTAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGaaa                                                  <  2:5571003/140‑1 (MQ=14)

                                                                                       cTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGaaa                                                  <  1:8556490/140‑1 (MQ=14)

                                                                                        ttCGCCCTTCGGGTCGTTGCCTGCGGCATCGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAg                                                 <  1:5942929/140‑1 (MQ=14)

                                                                                        ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGc                                                                                                        >  2:5232359/1‑86 (MQ=18)

                                                                                        ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGc                                                                                                        <  1:9895487/86‑1 (MQ=18)

                                                                                        ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCGCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGACTATTTCATGGCGGATTGGTTGGGAAGTTAAGGGACTGTGGAAAg                                                 >  2:9808514/1‑140 (MQ=11)

                                                                                           gCCCTTGGTGTCGTTTCCTCCTGCAACGCTCTCTCGCTGTCGCTCGAGTCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGA                                              <  1:1512029‑M1/140‑1 (MQ=255)

                                                                                            cccGTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGAT                                             <  2:9653170‑M1/140‑1 (MQ=255)

                                                                                             ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTTATTGCGGATTCGTTGGGCAGTTCAGGGACTTTTGAAAGTGATG                                            <  1:9968092‑M1/140‑1 (MQ=255)

                                                                                                       gTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGGGTCGCACCGTGGGCGAAGCTTCTCATCCGTCCCCGCC‑TGGGCCGGATATTGATTTTGGGATTCGTTGGGAAGGTCAGGGACGTTTGAAAGTGATGGTGGTggggg                                  >  2:4092411/1‑140 (MQ=9)

                                                                                                        gtgCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCT‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGA                                 <  2:2717322‑M1/139‑1 (MQ=255)

                                                                                                         tGCCTGCGGCAACGCTCTCTCGCTTGCGCTCGACTCGAACCTTGGTCGAAGCTTCTCAACCTTCCCCGCAGTGGGC‑CAATATATAATTGCGGTATGAGTGTGACGTTCAGGGACTTTGGAAAGTGATGGGGGGGGGGGac                                >  2:3763697/1‑139 (MQ=2)

                                                                                                         tGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGACCCTTGGTCGAAGCTTCTCATCCTTCCCCTCA‑TGGGCAGAATATTTGATTGCGTAGTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAA                                <  2:8451153‑M1/140‑1 (MQ=255)

                                                                                                         tGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAA                                <  1:11172404‑M1/140‑1 (MQ=255)

                                                                                                         tGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAACTTCAGGGACTTTGGAAAGTGATGGTGGTGGGGGAA                                >  2:6248190‑M1/1‑140 (MQ=255)

                                                                                                         tGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑GGGGCAGAATATTTAATTGCGGATTCGGTGGGAAGTTCAGGGTCTTTGGAAAGTGATGGTGGTgggggca                                >  2:10226301/1‑138 (MQ=11)

                                                                                                                 gCAACGCTCTCTCGCTTGCGATCGCGGAGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTAGTTGGGAAGTTAAGGGACTTTTGAAAGTGATGTTGGTGGGGGAAGGATTcga                        <  2:6286487‑M1/140‑4 (MQ=255)

                                                                                                                 gCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCT‑TGGGCAGAATATTTGATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcga                        <  2:2975293‑M1/140‑4 (MQ=255)

                                                                                                                  cAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCT‑TGGGCAGAATATTTGATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaa                       <  1:10012918‑M1/140‑5 (MQ=255)

                                                                                                                   aaCGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaac                      >  1:1454903‑M1/1‑135 (MQ=255)

                                                                                                                     cGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaacct                    >  2:3741079‑M1/1‑133 (MQ=255)

                                                                                                                        tctctcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcg                 <  2:9425016‑M1/140‑11 (MQ=255)

                                                                                                                        tctctcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcg                 <  2:7548962‑M1/140‑11 (MQ=255)

                                                                                                                        tctctcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcg                 <  2:6131195‑M1/140‑11 (MQ=255)

                                                                                                                          tctcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGGTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaa               >  1:6284210‑M1/1‑128 (MQ=255)

                                                                                                                            tcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGGTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGACGGATTcgaaccttcgaagt             >  1:1759298‑M1/1‑126 (MQ=255)

                                                                                                                            tcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGGTGGGAAGTTCAGGGACTTTTGAAAGGGATGGTGGTGGGGGAAGGATTcgaaccttcgaagt             >  1:10336002‑M1/1‑126 (MQ=255)

                                                                                                                              gCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGtt                                                                         <  1:4040532/78‑1 (MQ=11)

                                                                                                                               cTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcga          >  2:3574838‑M1/1‑123 (MQ=255)

                                                                                                                                 ggcgcTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatg        >  2:11039105‑M1/3‑121 (MQ=255)

                                                                                                                                  gcgCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTGGGGAAGTTCCGGGAGTTTTGATAGTGATGGTGGGGGGGGTAGGCTTcgatccttcgaagtcgatga       >  1:2665695‑M1/2‑120 (MQ=255)

                                                                                                                                    gCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAAATGAGGATTCGTTGGGAAGTTCATGGACTTTTTAAAGTGATGGTGGTGGGGGAAGGATTagaaacttcgaagtcgatgacg     >  1:8829960‑M1/1‑118 (MQ=255)

                                                                                                                                    gCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGGTTGTTAGTTCAGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaacatcgaagtccatgacg     >  1:1239238‑M1/1‑118 (MQ=255)

                                                                                                                                     ctctAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCT‑TGTGCAGAATATTTTATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgg    <  1:8285567‑M1/140‑24 (MQ=255)

                                                                                                                                     cTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGCAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgg    <  1:10601270‑M1/140‑24 (MQ=255)

                                                                                                                                     cTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgg    <  1:11039105‑M1/140‑24 (MQ=255)

                                                                                                                                     cTCGAGTCGAACCGTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgg    <  1:5747676‑M1/140‑24 (MQ=255)

                                                                                                                                      tCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGGGGGGGAAGGATGcgaaccttcgaagtcgatgacggc   >  2:7697741‑M1/1‑116 (MQ=255)

                                                                                                                                      tCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTGATTGCGGATTCGTTGGTAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccatcgaagacgatgacgga   >  2:1729618‑M1/1‑116 (MQ=255)

                                                                                                                                       cGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggca  <  1:2898477‑M1/140‑26 (MQ=255)

                                                                                                                                       cGAGTCGAACCGTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACATTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgaagacggca  <  1:48500‑M1/140‑26 (MQ=255)

GCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTT  >  NZ_CP025268/1292852‑1293126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`