Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0252681,293,0000AG65.8% 285.7 / 305.2 322noncoding (37/132 nt)CXP41_RS06835RtT sRNA
Reads supporting (aligned to +/- strand):  ref base A (31/75);  new base G (95/109);  total (132/190)
Fisher's exact test for biased strand distribution p-value = 3.46e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.65e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 327 total aligned reads displayed.

TTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGT  >  NZ_CP025268/1292861‑1293134
                                                                                                                                           |                                                                                                                                       
ttGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTa                                                                                                                                         <  1:7597872/140‑1 (MQ=255)
  gATTGCGGCTTCGTTTGAGAATTCCGGGGCTTTTGAAAGAGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTagt                                                                                                                                       <  2:10501696/140‑3 (MQ=255)
  gATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTagt                                                                                                                                       <  2:9263329/140‑3 (MQ=255)
     tggggATTCGCTTGAGTGTTCCGGGACTTTTGTAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGa                                                                                                                                    <  1:6471406/137‑1 (MQ=11)
     tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCATCGCTGCGCGCTTCGCCCTTCGGGCCGTTGCCTGAGGCAACGCTCTCTCGCTTTCGCTCGAATCGAACCTTAGTCGa                                                                                                                                    <  1:3950660/140‑1 (MQ=14)
     tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTTAGCCCATCACACTTCTGAACGATGCCTGTGGCAAAGTTATCTCGCTTACTCTCGAGACGAACAATAGTCGa                                                                                                                                    >  2:9155584/1‑140 (MQ=9)
     tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGa                                                                                                                                    >  1:9154173/1‑140 (MQ=255)
     tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCACCGCTGCGCGCTTCGCCCAACGGGTCGATGCATGCGGCAACGCACACTCGCTGACGCTCGAGCCGAACCTTCGTCGa                                                                                                                                    >  2:4178620/1‑140 (MQ=14)
      tcGGATTCGTTTGAGTATTCCGTGTCTTTTGGAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGaa                                                                                                                                   <  2:2847342/139‑1 (MQ=14)
      gCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGaa                                                                                                                                   <  1:9333632/140‑1 (MQ=255)
      gCGGATTCGTTTGAGAATTCCGGGGATTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGaa                                                                                                                                   <  2:5390979/140‑1 (MQ=255)
       cGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTTGTCGAAg                                                                                                                                  >  2:6574395/1‑140 (MQ=255)
          agtCGTTTGAGAATTCCGGGGCTTTTGCCAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCtt                                                                                                                               <  2:4657754/138‑1 (MQ=14)
               tttGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCAt                                                                                                                          <  1:1498601/139‑1 (MQ=255)
               tttGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCAt                                                                                                                          <  2:8067535/139‑1 (MQ=255)
               tttGAGAATTCCGGGGCCGTTGAAAGTGATGGTGGTGTGGGAAGGATTAGTCTGCTCTGCGAGATTAGCATTTGTGTTAGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCAt                                                                                                                          <  2:10334749/139‑1 (MQ=14)
               tctGAGCATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCAt                                                                                                                          <  2:6437041/138‑1 (MQ=255)
                ttGAGCAGTCCGGGGCTTCTGACAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGACGAAGCTTCTCATc                                                                                                                         <  1:6070233/140‑1 (MQ=14)
                 tGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGATCCGAACCTTAGTCGAAGCTTCTCAtac                                                                                                                        >  1:8401792/1‑138 (MQ=255)
                 tGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGACGAACCTTAGTCGAAGCTTCTCATcc                                                                                                                        >  2:4026474/1‑140 (MQ=255)
                 tGAGAATTCCGGGGATTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATcc                                                                                                                        <  2:671716/140‑1 (MQ=255)
                   agaATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCtt                                                                                                                      <  2:2656730/140‑1 (MQ=255)
                    gaATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTc                                                                                                                     <  1:10214851/140‑1 (MQ=255)
                    gaATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTc                                                                                                                     <  1:5037102/140‑1 (MQ=255)
                    gaATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTc                                                                                                                     <  1:10511425/140‑1 (MQ=255)
                    gaATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTc                                                                                                                     <  1:1206549/140‑1 (MQ=255)
                        tCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCCGCGCTGCGCGCATCGCCCTTCGGGTCGTTGCCTGAGGCAACGATCTCTCGCTGACGCTCGAGGCGAACCTTATTCGAAGCTTCTCAACCGTCCCCg                                                                                                                 >  1:7198779/1‑140 (MQ=11)
                          cGGGGCTTTTGCAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCa                                                                                                               <  1:7158200/140‑1 (MQ=25)
                            gggCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCA‑Tg                                                                                                            <  2:8979692/140‑1 (MQ=21)
                            gggCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGAGCTGCGCGCTTCGCCCTACGTGTCGTTGCATGTGGCAACGGTCTCTCGCTTACGCACGACACGAACCTTAGTCGACTCGTCTCAACCTTCCCCGctgt                                                                                                             >  1:5869469/1‑137 (MQ=11)
                             ggCTTTTGCAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCA‑Tgg                                                                                                           <  2:4941952/140‑1 (MQ=18)
                              gCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCTCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGATCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCA‑Tggg                                                                                                          <  2:8491279/140‑1 (MQ=16)
                              gCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCA‑Tggg                                                                                                          <  2:11265384/140‑1 (MQ=18)
                              gCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCA‑Tggg                                                                                                          <  1:10854701/140‑1 (MQ=18)
                              gCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCA‑Tggg                                                                                                          <  1:1298650/140‑1 (MQ=18)
                              gCTTTTGAAAGTGATGGTGGGGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCA‑Tggg                                                                                                          <  1:10273577/140‑1 (MQ=18)
                              gCTTTAGACAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCGTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCA‑Tggg                                                                                                          <  2:6823201/140‑1 (MQ=255)
                                tattGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGAAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCa                                                                                                        <  2:7270926/138‑1 (MQ=12)
                                   tgtaaGGGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGaa                                                                                                     <  2:1237949/137‑1 (MQ=12)
                                                   gggggAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGTCGAACCTTAGTCGaa                                                                                                                                   >  2:6003449/1‑95 (MQ=16)
                                                         aGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGTCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCa                                                                                                        >  2:10665509/1‑115 (MQ=255)
                                                         aGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTCGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTgg                                                                               <  1:10732042/140‑1 (MQ=11)
                                                          ggATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTggg                                                                              <  1:2375060/140‑1 (MQ=255)
                                                          ggATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTggg                                                                              <  1:209819/140‑1 (MQ=255)
                                                                cTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTc                                                                        >  2:11152403/1‑140 (MQ=255)
                                                                  cAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGAATCGTGGGGAAGGTCAg                                                                      >  2:8293576/1‑140 (MQ=11)
                                                                  cAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAAGTGCGGATTCGTTGGGAAGTTCAg                                                                      <  1:2608756/140‑1 (MQ=14)
                                                                  cAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTATCGCTGGCGCTCGAGTCGAAACGTGGTCGAAGCTTCTCATACTTACCCGCA‑TTGGCAGAATATTTAATTTCGGATTCGTTTGGAAGTTAAg                                                                      >  2:2399161/1‑140 (MQ=11)
                                                                   aGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCTAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCT‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAgg                                                                     <  2:2267053/140‑1 (MQ=14)
                                                                   aGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAgg                                                                     <  1:2970171/140‑1 (MQ=255)
                                                                     cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTTCGGTTTGGGTGGGGAGTTGAgggg                                                                   >  1:7335070/1‑139 (MQ=11)
                                                                     cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGa                                                                   <  2:3380830/140‑1 (MQ=255)
                                                                     cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCA‑Tggg                                                                                                          >  1:6617980/1‑101 (MQ=17)
                                                                        tGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACtt                                                                >  2:6253641/1‑140 (MQ=255)
                                                                          cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCCGAATATTTGATTGCGGATTCGTTTGGAAGTTCAGGGACtttt                                                              >  2:4586374/1‑140 (MQ=11)
                                                                          cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCAAACTTCCCCGCA‑TGGGCAGAAAATTTAATTGCGGATTCGTTTGGACGTTGCGGGACgttg                                                              >  2:3100318/1‑139 (MQ=11)
                                                                          cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCGCATCCTTCCCCGCA‑TGGGCAGTATATTTATTTGCGGATTCGTTGGGAAGTGAAGGGAcgtgt                                                              >  2:9520490/1‑136 (MQ=14)
                                                                            cgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGa                                                            <  2:3947597/140‑1 (MQ=255)
                                                                            cgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGa                                                            <  1:6253641/140‑1 (MQ=255)
                                                                              cTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCTAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGaaa                                                          <  2:5114983/140‑1 (MQ=14)
                                                                               ttCGCCCTTCGGGTCGTTGCCTGCGGCATCGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAg                                                         <  1:5942929/140‑1 (MQ=14)
                                                                               ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAg                                                         <  1:11284743/140‑1 (MQ=255)
                                                                               ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCGCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGACTATTTCATGGCGGATTGGTTGGGAAGTTAAGGGACTGTGGAAAg                                                         >  2:9808514/1‑140 (MQ=11)
                                                                                  gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGA                                                      <  1:11152403‑M1/140‑1 (MQ=255)
                                                                                   cccGTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGAT                                                     <  2:9653170‑M1/140‑1 (MQ=255)
                                                                                    ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTTATTGCGGATTCGTTGGGCAGTTCAGGGACTTTTGAAAGTGATG                                                    <  1:9968092‑M1/140‑1 (MQ=255)
                                                                                       tCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTG                                                 <  2:10897776‑M1/140‑1 (MQ=255)
                                                                                        cGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGGGCTGGTGG                                                >  2:6947892‑M1/1‑140 (MQ=255)
                                                                                        cGGGTCGGTGCCTGCGGCAACGCTCGCGCGCTGACGCTCGAGCCGAACCGTCGTCGAAGCTTCTCAACCTTCCCCGCC‑TGGGCAGAATACTTGATTGCGGAGTCGCTTGAGCGTTCAGGGACTTTTGCAAGTGAtggtgg                                                <  2:6137930/140‑1 (MQ=255)
                                                                                              gTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGGGTCGCACCGTGGGCGAAGCTTCTCATCCGTCCCCGCC‑TGGGCCGGATATTGATTTTGGGATTCGTTGGGAAGGTCAGGGACGTTTGAAAGTGATGGTGGTggggg                                          >  2:4092411/1‑140 (MQ=9)
                                                                                                tGCCTGCGGCAACGCTCTCTCGCTTGCGCTCGACTCGAACCTTGGTCGAAGCTTCTCAACCTTCCCCGCAGTGGGC‑CAATATATAATTGCGGTATGAGTGTGACGTTCAGGGACTTTGGAAAGTGATGGGGGGGGGGGac                                        >  2:3763697/1‑139 (MQ=2)
                                                                                                tGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑GGGGCAGAATATTTAATTGCGGATTCGGTGGGAAGTTCAGGGTCTTTGGAAAGTGATGGTGGTgggggca                                        >  2:10226301/1‑138 (MQ=11)
                                                                                                        gCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCT‑TGGGCAGAATATTTGATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcga                                <  2:2975293‑M1/140‑4 (MQ=255)
                                                                                                         cAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCC‑TGGGCCGAATATTTAATTGCGGATTCGTTGGGTAGTTCAGGGACTGTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaa                               >  2:5570502‑M1/1‑136 (MQ=255)
                                                                                                         cAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCT‑TGGGCAGAATATTTGATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaa                               <  1:10012918‑M1/140‑5 (MQ=255)
                                                                                                            cGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaacct                            >  2:3741079‑M1/1‑133 (MQ=255)
                                                                                                               tctctcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcg                         <  2:9425016‑M1/140‑11 (MQ=255)
                                                                                                               tctctcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcg                         <  2:7548962‑M1/140‑11 (MQ=255)
                                                                                                                  ctcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaag                      <  1:8958098‑M1/140‑14 (MQ=255)
                                                                                                                   tcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGGTGGGAAGTTCAGGGACTTTTGAAAGGGATGGTGGTGGGGGAAGGATTcgaaccttcgaagt                     >  1:10336002‑M1/1‑126 (MQ=255)
                                                                                                                      cTGGCGCTCGAGTCGAACCTTTGTCGAAGCTTCTCAACCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGCTTCGGTCGGAAGTTCAGGGACTGTTGTAAGTGATGGTGGTGGGGGAAGGATTcgaagcttcgaagtcgg                  >  1:8620830‑M1/1‑123 (MQ=255)
                                                                                                                        ggcgcTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatg                >  1:3570561‑M1/3‑121 (MQ=255)
                                                                                                                         gcgCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGGTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcggcccttcgtagtcgatgt               >  1:9761996‑M1/2‑120 (MQ=255)
                                                                                                                          cGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCT‑TGGGCAGAATAGATAATTGCGGATTCGTTTGGAATTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgac              <  2:4230824‑M1/140‑22 (MQ=255)
                                                                                                                           gCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaacttcgaagtcgatgacg             >  2:5622646‑M1/1‑118 (MQ=255)
                                                                                                                            cTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGCAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgg            <  1:10601270‑M1/140‑24 (MQ=255)
                                                                                                                            cTCGAGTCGAACCGTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgg            <  1:5747676‑M1/140‑24 (MQ=255)
                                                                                                                             tCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGGGGGGGAAGGATGcgaaccttcgaagtcgatgacggc           >  2:7697741‑M1/1‑116 (MQ=255)
                                                                                                                             tCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATGCGTTGGGAAGTTCAGGGACTTGTGATAGTGATGGTGGGGGGGGAAGGATTcgaaccatcgacgtcgatgacggc           >  1:4087005‑M1/1‑116 (MQ=255)
                                                                                                                             tCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTGATTGCGGATTCGTTGGTAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccatcgaagacgatgacgga           >  2:1729618‑M1/1‑116 (MQ=255)
                                                                                                                              cGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggca          <  1:2898477‑M1/140‑26 (MQ=255)
                                                                                                                              cGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggca          <  2:1384643‑M1/140‑26 (MQ=255)
                                                                                                                              cGAGTCGAACCTTGGTCGAAGCTTCTCATCCGTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggca          <  1:940434‑M1/140‑26 (MQ=255)
                                                                                                                              cGAGTCGAACCGTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACATTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgaagacggca          <  1:48500‑M1/140‑26 (MQ=255)
                                                                                                                                 gtcgaACCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagat       <  2:11036111‑M1/138‑29 (MQ=255)
                                                                                                                                     aaCCTTGGTCGAAGCTTCTCATCCTTCCCCGCT‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttac   <  1:3742573‑M1/140‑33 (MQ=255)
                                                                                                                                     aaCCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttac   >  2:7388679‑M1/1‑108 (MQ=255)
                                                                                                                                      aCCTTTGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTTATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttaca  <  1:1729618‑M1/140‑34 (MQ=255)
                                                                                                                                      aCCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttaca  <  1:4648383‑M1/140‑34 (MQ=255)
                                                                                                                                      aCCTTGGTCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttaca  <  1:6354914‑M1/140‑34 (MQ=255)
                                                                                                                                           |                                                                                                                                       
TTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCA‑TGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGT  >  NZ_CP025268/1292861‑1293134

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑