BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,293,160	0	G	A	72.7%	294.1 / 104.7	198	noncoding (55/132 nt)	CXP41_RS06840	RtT sRNA
Reads supporting (aligned to +/- strand): ref base G (26/22); new base A (26/102); total (57/141)
Fisher's exact test for biased strand distribution p-value = 2.92e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.92e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 201 total aligned reads displayed.

ATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATG  >  NZ_CP025268/1293026‑1293298

                            cttgagaGTTCAGGGACTTTTGAATGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGAGTCGTGGCCTGCGGCACCGCGCTCTCGCTGGCGCTCGAGTCGAACCGTGGTCGAAGGTTCTCag                                                                                                           >  2:10561487/7‑139 (MQ=11)

                                   gTTCCGGGACTTTTGAACGGGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTccc                                                                                                    <  1:8999086/140‑1 (MQ=11)

                                      cAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCGGCGGCACCGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCCTCTCATCCTTACCCGc                                                                                                 >  1:9011887/1‑140 (MQ=11)

                                      cAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCCCATCGCCCTTCGGGTCGTTGCCTGAGGCAAACAACTCTCACAGGCCCACCAGACGAACCTTTGTAGAACATTCAAATCCTTcccccc                                                                                                 >  1:2678737/1‑138 (MQ=2)

                                      cAGGGACTTGTGAATCTGATCCTGGTGGGGGACGGATTACTCAGCGCTGCGCGCTTCGCCCGTCGGGGCGTTGCCGGCGGCAACGCGCGCGCGCTGGCCCTCGAGTCGAACCTTAGTCCAAGGTTCTCACCCTGCCCCgg                                                                                                 >  2:9048129/1‑139 (MQ=2)

                                       aGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGAGGCAACGCACTCTCGCTGGCGCTCGAGTCGAACCATGGTAGAATCATATCAACCATCCCCGCa                                                                                                >  1:1872954/1‑140 (MQ=11)

                                          ggcTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCTCCCTTCGGTTCGTTGCCTTCGGCAAAGCTCTCTCGCTGGCGCACGAGTCGAACATTGGTCGAAGATTCTCATCCTTCCCCGCATgg                                                                                             >  2:6769318/3‑140 (MQ=11)

                                          ggcTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAgt                                                                                                                                   <  1:7540561/100‑2 (MQ=11)

                                           tgttttGAATTTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                            <  1:5437900/138‑1 (MQ=11)

                                           gcTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                            <  1:1748191/139‑1 (MQ=9)

                                           ccTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                            <  1:9037808/139‑1 (MQ=12)

                                             ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                          <  2:1432984/140‑1 (MQ=12)

                                             cattGAAAGTGATGGAGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                          <  1:9309748/138‑1 (MQ=11)

                                              tttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTTCCTGCGGCAAAGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCAACCTTCCCCGCATGGGCAg                                                                                         >  2:4982848/1‑140 (MQ=11)

                                              tttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCACGCATGGGCAg                                                                                         >  2:9324475/1‑140 (MQ=255)

                                              tttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCGTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAg                                                                                         >  2:1652990/1‑140 (MQ=255)

                                              tttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAAACTTTGTCGAATCTTCTCATCCATCCCCGCATGGGccg                                                                                         >  1:2365558/1‑138 (MQ=11)

                                              tttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCACGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTAAAACTTCCCCCCATggggcg                                                                                         >  1:3794173/1‑137 (MQ=11)

                                              tttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAAAGCTCTCTCGCTGGCGCTCGAGTCGAACCATGGTCGAATCTTCTCATACTTACCCCCATGGGccg                                                                                         >  1:9278912/1‑138 (MQ=11)

                                              tttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGAGGCAACGCACTCTCGCTTGCGCTCGAGTCGAAACTTTGTAGATGCTTCTCAAACTTACCCGCAtctgaag                                                                                         >  2:2334748/1‑134 (MQ=11)

                                               gagtaaGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCCAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGa                                                                                        <  2:5967203/136‑1 (MQ=11)

                                                                           tACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCCAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGGGTGAGAGt                                                            >  2:1712903/1‑140 (MQ=11)

                                                                           tACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGt                                                            <  2:8639090/140‑1 (MQ=14)

                                                                            aCTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGACTGCGGCAACGCTCTCTCGGTGTCGCTCGAGCCGAACCTTGGTCGAAGCTTCTCCTCATTCCCCGCCTGGGCCGAGGAGTTGAGTGCGGATTCGCGTGGGAGtg                                                           >  2:6053367/1‑139 (MQ=11)

                                                                                aGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAgg                                                       <  1:1313957/140‑1 (MQ=21)

                                                                                 gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                      <  1:10335648/140‑1 (MQ=21)

                                                                                 gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                      <  2:11299880/140‑1 (MQ=21)

                                                                                 gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                      <  1:7471368/140‑1 (MQ=21)

                                                                                 gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                      <  1:6808051/140‑1 (MQ=21)

                                                                                 gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                      <  1:419012/140‑1 (MQ=21)

                                                                                  cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGa                                                     <  1:983363/140‑1 (MQ=255)

                                                                                  cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGa                                                     >  2:8290223/1‑140 (MQ=25)

                                                                                  cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCGTCCCCGCAGGGGCAGACTATTTGTTTGCGGATTCGCTTGTGAGTTCAgggg                                                     >  1:11036111/1‑139 (MQ=11)

                                                                                  cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCGTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGTGAGTTCAGGGa                                                     >  1:10780168/1‑140 (MQ=255)

                                                                                   gcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGAc                                                    <  2:2857516/140‑1 (MQ=255)

                                                                                     tGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCGGACGCGCGAGCCGAACCTTGGTAGAAGCTTCTCCTACTTCCCCGCATGGGCAGAATATTTGATTGCGGAGTAGCTTGAGAGTTAAGGGACtt                                                  >  2:40220/1‑140 (MQ=11)

                                                                                       cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGTCGAACCTTAGTCGAAGCTTCTCAACCTTCCCCGCAGGGGCAGAATATTTGATTTCGGAAACGATTGAGCGGTCAGGGAcggtg                                                >  2:1240541/1‑136 (MQ=11)

                                                                                       cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCCCTCGAGCCGACCCTTAGTCGAAGCGTCTCATCCTTCCCCGCATGGGCAGACTATTTTATTGCGGATTCGCTTGGGAGTTCAGGGACtttt                                                >  2:10495007/1‑140 (MQ=11)

                                                                                       cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGGCGAACCTTTGTCGAAGCTTCTCATCCGTGCCCGCATGGGCCGAATATTTTATTGCGGATTAGGTTGGGAGTTGAGGGACtttt                                                >  2:38845/1‑140 (MQ=11)

                                                                                       cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGACCCTTAGGCGAAGCTTCTCAACCTTCCCCGCATGGGCCGAATATTTGATTGCGGATTCGCGTGGGGGTTCAGGGGCtttg                                                >  1:9525346/1‑139 (MQ=11)

                                                                                       cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGTGAGTTCAGGGACtttt                                                >  2:7133489/1‑140 (MQ=255)

                                                                                       cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACcttt                                                <  2:9495399/140‑1 (MQ=255)

                                                                                        gcgcTTCGCCCTTCGGGTCGTTGCCAGCGGCAACGCGCCCACGCGGCCGCTCGAGCCGCACCGTTGTCGAAGCTTATCATCCATCCCCCCCAGGGCAGTCTAGTTGATTGCGGATTCGCTGGTGAGTTGAGGGGCGTTTg                                               >  1:4880425/1‑140 (MQ=2)

                                                                                         cgcgTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGa                                              <  1:6745595/140‑1 (MQ=255)

                                                                                            ttCGCCCTTCGGGTCGTTGCCTGCGGCATCGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAg                                           <  1:3116109/140‑1 (MQ=255)

                                                                                            ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAg                                           <  2:10281339/140‑1 (MQ=255)

                                                                                             tCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGt                                          <  2:10628494/140‑1 (MQ=255)

                                                                                             gcGCCCTTCGGGTCGGTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTGAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGACAGt                                          <  2:6185503/139‑1 (MQ=11)

                                                                                               gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCTAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGa                                        <  1:10165999/140‑1 (MQ=255)

                                                                                               gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGa                                        <  2:2970734/140‑1 (MQ=255)

                                                                                               gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGa                                        <  1:3371610/140‑1 (MQ=255)

                                                                                               gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGa                                        <  1:8235978/140‑1 (MQ=255)

                                                                                                 ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtg                                      <  1:10528120/140‑1 (MQ=255)

                                                                                                 ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtg                                      >  2:7560571/1‑140 (MQ=255)

                                                                                                 ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtg                                      <  1:8840178/140‑1 (MQ=255)

                                                                                                 ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtg                                      <  1:6247039/140‑1 (MQ=255)

                                                                                                  cgtCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtgg                                     <  2:10805797/138‑1 (MQ=255)

                                                                                                   ttCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGAC‑TTTGAAAGTGAtggtg                                   <  2:1378271/140‑1 (MQ=255)

                                                                                                    tCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCCGAATATTTGATTGCGGATTCGCTGGAGAGGTCAGGGACTTTTGCAAGTGAtggtg                                   >  2:6365737/1‑140 (MQ=11)

                                                                                                     cGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCTAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtgg                                  <  1:1150142/140‑1 (MQ=255)

                                                                                                     cGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtgg                                  <  1:7482837/140‑1 (MQ=255)

                                                                                                      gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGACTTCAGGGTCTTTTGAAAGTGAtggtggt                                 <  2:8091526/140‑1 (MQ=11)

                                                                                                      gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGATTGAGAGTTAAGGGACTTTTGAAAGTGAtggtggt                                 <  1:5856370/140‑1 (MQ=11)

                                                                                                      gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtggt                                 <  1:7983619/140‑1 (MQ=255)

                                                                                                         tCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCTAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggg                              <  1:9731419/140‑1 (MQ=11)

                                                                                                         tCGTTGCCTGCCGCAACGCACTCTCGCAGACGCTCGCGCCGAACCTTCGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGATTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggg                              <  1:11199948/140‑1 (MQ=11)

                                                                                                           gTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGGCGAACCTTATTCGAAGCTTATCATCCTTCCCCGCATGGGAAGAATATTTGTTTGCGGATTAGCTTTAGAGTTCAGTGACTTTTGAAAGTGATGGTGGTggggg                            <  1:11150464/140‑1 (MQ=11)

                                                                                                           gTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                            <  1:3627527/140‑1 (MQ=255)

                                                                                                           gTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCTAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                            <  2:5872515/140‑1 (MQ=11)

                                                                                                           gTTGCCTGCGGCAACGCTCTCTCGCTGCCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGATTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                            <  1:9981781/140‑1 (MQ=255)

                                                                                                           gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGCGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                            <  2:9450727/140‑1 (MQ=255)

                                                                                                           gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTTGTCGTAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGTAAGTGATGGTGGTggggg                            <  2:3626892/140‑1 (MQ=11)

                                                                                                           gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCCTCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                            <  2:10332507/140‑1 (MQ=255)

                                                                                                           gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                            <  1:10838345/140‑1 (MQ=255)

                                                                                                           gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                            <  2:907164/140‑1 (MQ=255)

                                                                                                           gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                            <  1:10444980/140‑1 (MQ=255)

                                                                                                           gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                            <  1:1577642/140‑1 (MQ=255)

                                                                                                           gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                            <  1:8880018/140‑1 (MQ=255)

                                                                                                           gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                            >  2:10760293/1‑140 (MQ=255)

                                                                                                           gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                            <  1:2742514/140‑1 (MQ=255)

                                                                                                           gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                            <  1:2203131/140‑1 (MQ=255)

                                                                                                           gTTGCCTGCGGCAACGCTCTCTCGCTGAAGGTCGAGCCGAACCTTAGTCGAAGCTTCTCAACCTTCCCCGCATGGGCATACTATTTGATTGCGGATGCGCGTGAGCGTTCAGGGACTGTTGTTTGTGTTGGTGGTggggg                            >  2:8740476/1‑140 (MQ=11)

                                                                                                           gTTGCCTGCGGCAACGCTCTCTCGCAGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGACTATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                            <  1:642603/140‑1 (MQ=255)

                                                                                                           gTTGCCTGCGGCAACGCTCTCGCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                            <  1:4387998/140‑1 (MQ=255)

                                                                                                              gCCTGCGGCATCGCTCTCGCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAg                         <  1:4031415/140‑1 (MQ=255)

                                                                                                                cTGCGGCTACGGTCTCTCGGTGAGGCTCGAGCCTAACCTTTGTCGTATGTTCTCCTCCGTCCCCGCTTGGGCATATTATTTGATTGCGGATTCGCTTGAGAGTTCTTGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                       <  1:5063071/140‑1 (MQ=2)

                                                                                                                cTGCGGCTACGCTCTCTCGCTGACGATCGAGCCGAACCGTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGATTATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                       <  1:178841/140‑1 (MQ=11)

                                                                                                                cTGCGGCATCGCTCTCTCGCTGACGCTCGAGCCGAACCTGAGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCATTATATTTGATTGCGGATTAGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGTAGGa                       <  1:11250087/140‑1 (MQ=11)

                                                                                                                cTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTGCCCCGCTTGGGCAGAATATTGGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                       <  2:2449300/140‑1 (MQ=11)

                                                                                                                cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGATTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                       <  2:7503949/140‑1 (MQ=255)

                                                                                                                cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                       <  2:6344732/140‑1 (MQ=255)

                                                                                                                cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                       <  2:11332250/140‑1 (MQ=255)

                                                                                                                cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCGTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                       <  1:7706844/140‑1 (MQ=255)

                                                                                                                     gCAACGCTCTCTCGCTGACGCTCGTGCAGCACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttact                  <  1:11114994/140‑4 (MQ=11)

                                                                                                                     gCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttact                  <  1:6046619/140‑4 (MQ=255)

                                                                                                                        aCGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttactcag               <  1:301656/140‑7 (MQ=255)

                                                                                                                         cGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                            >  1:5061637/1‑126 (MQ=255)

                                                                                                                         cGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATGCGGTTGAGAGTTCAGGGAAGTTTGAAAGTGATGGTGGTGGGGGAAGGAttagtcaga              >  2:2619439/1‑133 (MQ=11)

                                                                                                                            cctctcGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCGTCCCCGCTTGGGCAGAATTTTTTATTGCGGATTCGTTTGTTACTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCg           <  2:6676208/139‑1 (MQ=14)

                                                                                                                                     ggCGCTCGAGTCGTACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGCCAGAATATTTTATTGCGGATTCGTTGGGGAGTTCAGGGACTTTTGATAGTGATGGTGGTGGGGGTAGGATTCGAAACTTCGAAGTCGATg  >  1:872575/1‑140 (MQ=14)

ATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATG  >  NZ_CP025268/1293026‑1293298

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`