BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	1,293,001	A→G	noncoding (36/132 nt)	CXP41_RS06835 ←	RtT sRNA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,293,001	0	A	G	99.4%	919.6 / NA	322	noncoding (36/132 nt)	CXP41_RS06835	RtT sRNA
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (131/189); minor base T (1/1); total (132/190)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 322 total aligned reads displayed.

ATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGT  >  NZ_CP025268/1292864‑1293134

  tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCATCGCTGCGCGCTTCGCCCTTCGGGCCGTTGCCTGAGGCAACGCTCTCTCGCTTTCGCTCGAATCGAACCTTAGTCGa                                                                                                                                   <  1:3950660/140‑1 (MQ=14)

  tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                                                   >  2:10335648/1‑140 (MQ=255)

  tGCGGAGTCGCTTGAGCGTTCCGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGa                                                                                                                                   <  2:2268830/140‑1 (MQ=11)

  gccGGATTCGATAGAGAAGTCCGGGGCTTTAGACAGTGATGGGGGTGGGGGAAGCATTACTCCGCGCTGCGCGCTTCGCCCTTCGGGTCGGTGCCTGCGGCAACGCTCTCTCGCGGACGCACGAGCCGAACCTTAGTCGa                                                                                                                                   <  2:11279834/138‑1 (MQ=14)

   gCGGATTCGTTTGAGAATTCCGGGGATTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGaa                                                                                                                                  <  2:5390979/140‑1 (MQ=255)

    cGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTTGTCGAAg                                                                                                                                 >  2:6574395/1‑140 (MQ=255)

       agtCGTTTGAGAATTCCGGGGCTTTTGCCAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCtt                                                                                                                              <  2:4657754/138‑1 (MQ=14)

            tctGAGCATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCAt                                                                                                                         <  2:6437041/138‑1 (MQ=255)

              tGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGACGAACCTTAGTCGAAGCTTCTCATcc                                                                                                                       >  2:4026474/1‑140 (MQ=255)

              tGAGAATTCCGGGGATTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATcc                                                                                                                       <  2:671716/140‑1 (MQ=255)

                 gaATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTc                                                                                                                    <  1:10214851/140‑1 (MQ=255)

                 gaATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTc                                                                                                                    <  2:3200520/140‑1 (MQ=255)

                 gaATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTc                                                                                                                    <  1:1206549/140‑1 (MQ=255)

                  aaTTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGGCGAACCTTAGTCGAAGCTTCTCATCCttac                                                                                                                   >  2:9043734/1‑138 (MQ=255)

                     tCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCCGCGCTGCGCGCATCGCCCTTCGGGTCGTTGCCTGAGGCAACGATCTCTCGCTGACGCTCGAGGCGAACCTTATTCGAAGCTTCTCAACCGTCCCCg                                                                                                                >  1:7198779/1‑140 (MQ=11)

                     tCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCTCTGCGCGCATCGCCCTTCGGGTCGTTGCCTGCGGCAAAGCACTCTCGCTGACCCGCGAGGCGGTCCTTAGTAGAAGCTGCTCATCCATCACCg                                                                                                                >  2:10788971/1‑140 (MQ=11)

                       cGGGGCTTTTGCAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCa                                                                                                              <  1:7158200/140‑1 (MQ=25)

                        ggggCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCAt                                                                                                             <  1:9303862/140‑1 (MQ=21)

                         gggCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGAGCTGCGCGCTTCGCCCTACGTGTCGTTGCATGTGGCAACGGTCTCTCGCTTACGCACGACACGAACCTTAGTCGACTCGTCTCAACCTTCCCCGctgt                                                                                                            >  1:5869469/1‑137 (MQ=11)

                          ggCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGAGCTGCGAGCTTCGCCCTTCTGGTCGTTTCCTGCGGCAACGCTCGCTCGCTGACGCTCGAGACGAACCTTAGTCGAAGCTTCTCATCCTTACCCGCATgg                                                                                                           >  2:1675268/1‑140 (MQ=11)

                           gCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCTCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGATCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                          <  2:8491279/140‑1 (MQ=16)

                           gCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCTAGCCGAACCTTAGTCGAAGATTCTCATCCTTCCCCGCATggg                                                                                                          <  1:6530402/140‑1 (MQ=16)

                           gCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                          <  1:1298650/140‑1 (MQ=18)

                           gCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                          <  1:10854701/140‑1 (MQ=18)

                           gCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                          <  1:10453250/140‑1 (MQ=18)

                           gCTTTTGAAAGTGATGGTGGGGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                          <  1:10273577/140‑1 (MQ=18)

                           gCTTTAGACAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCGTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                          <  2:6823201/140‑1 (MQ=255)

                             ttttGAAAGTGATGGTGGTGGGGGAAGGAGTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                        <  2:11076074/140‑1 (MQ=17)

                                      tGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGACGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCCGAatatgtg                                                                                               >  2:1771578/1‑137 (MQ=255)

                                                gggggAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGTCGAACCTTAGTCGaa                                                                                                                                  >  2:6003449/1‑95 (MQ=16)

                                                      aGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTCGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTgg                                                                               <  1:10732042/140‑1 (MQ=11)

                                                       ggATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTggg                                                                              <  1:209819/140‑1 (MQ=255)

                                                       ggATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTAATTGCGGATTCGTTggg                                                                              <  1:8624460/140‑1 (MQ=11)

                                                        gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGa                                                                             <  2:9255336/140‑1 (MQ=255)

                                                        gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGa                                                                             <  1:6627014/140‑1 (MQ=255)

                                                         aTTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTGGAACCTTGGTCGAAGCTTCGCATCCTTCCCCGCATGGGCCGACTATTGAATTGCGGATTCGTGGGGaa                                                                            >  2:1260018/1‑140 (MQ=11)

                                                         aTTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCGTCCACGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGac                                                                            >  2:7238533/1‑139 (MQ=11)

                                                             cTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGACTATTTAATTGCGGATTCGTTGGGAAGTTc                                                                        >  2:10283063/1‑140 (MQ=14)

                                                               cAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGAATCGTGGGGAAGGTCAg                                                                      >  2:8293576/1‑140 (MQ=11)

                                                                  cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAATCTTCTCATCCTTACCCGCATGGGCAGAATATTTAATTGCGGATTAGTTGGGAAGTTCAGGGa                                                                   >  2:3016011/1‑140 (MQ=14)

                                                                  cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCCGAATATTTAATTGCGGATTGGTTGGGAAGTTCAGGGa                                                                   >  2:5018569/1‑140 (MQ=14)

                                                                  cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTTCGGTTTGGGTGGGGAGTTGAgggg                                                                   >  1:7335070/1‑139 (MQ=11)

                                                                  cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAgggg                                                                   >  2:2898477/1‑139 (MQ=255)

                                                                  cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGa                                                                   <  2:3380830/140‑1 (MQ=255)

                                                                  cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCATCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGa                                                                   >  1:9425016/1‑140 (MQ=14)

                                                                  cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCACTCGCTGGCGCTCGAGTCGAACCGTGGGGGAAGCTTCTCAACCTTCCCCGCATGGGGAGGATATTTAATTGCGGATTGGGTGGGGAGTTCAgggg                                                                   >  1:2859005/1‑139 (MQ=11)

                                                                     tGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACtt                                                                >  2:6253641/1‑140 (MQ=255)

                                                                       cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCCGAATATTTGATTGCGGATTCGTTTGGAAGTTCAGGGACtttt                                                              >  2:4586374/1‑140 (MQ=11)

                                                                       cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCGCATCCTTCCCCGCATGGGCAGTATATTTATTTGCGGATTCGTTGGGAAGTGAAGGGAcgtgt                                                              >  2:9520490/1‑136 (MQ=14)

                                                                       cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCGTGGTCGTAGCTTATCATCCATACCCGCCAGGGCAGCATATTTAATTGCGGATTCGGTGGGTAGTTCAGGGACtttt                                                              >  1:4855427/1‑140 (MQ=11)

                                                                       cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTAGAACCGTGGGCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAAGTTCGGCTTCGGTGGGACGGTGAGGGGCtttt                                                              >  2:4179449/1‑140 (MQ=11)

                                                                         cgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGa                                                            <  2:3954176/140‑1 (MQ=255)

                                                                         cgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGa                                                            <  1:6253641/140‑1 (MQ=255)

                                                                          gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGaa                                                           <  1:4683511/140‑1 (MQ=255)

                                                                           cTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGaaa                                                          <  1:8556490/140‑1 (MQ=14)

                                                                            ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGTACCTTGGTCGAAGCTTCTCATCCTTCCCCGCCTGGGCAGAATATTTAATTGCGGATTCGGGGGGAAGTTCAGGGACTTTTGAAAg                                                         >  2:7848325/1‑140 (MQ=11)

                                                                            ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGc                                                                                                               <  1:5232359/86‑1 (MQ=18)

                                                                            ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGc                                                                                                               <  1:9895487/86‑1 (MQ=18)

                                                                            ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCGCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGACTATTTCATGGCGGATTGGTTGGGAAGTTAAGGGACTGTGGAAAg                                                         >  2:9808514/1‑140 (MQ=11)

                                                                            ttCGCCCTTCGGGTCGTTGCCTGCGGCAAAGCTCTCTAGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCAACCTTCACCGCATGGGCAGAATAATGTATTGCGGAGTAGTTGGGAAGTTCAGGGAAGTTTGatat                                                         >  2:4393455/1‑137 (MQ=11)

                                                                               gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGA                                                      <  2:2531‑M1/140‑1 (MQ=255)

                                                                                cccGTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGAT                                                     <  2:9653170‑M1/140‑1 (MQ=255)

                                                                                 ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTTATTGCGGATTCGTTGGGCAGTTCAGGGACTTTTGAAAGTGATG                                                    <  1:9968092‑M1/140‑1 (MQ=255)

                                                                                 ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATG                                                    <  1:1471509‑M1/140‑1 (MQ=255)

                                                                                   gtCGGGTCGTTGCCTGCGGCAACGATCTCTCGCTGGCGCTCGATTCGAACCTTGGTCGAATCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTAAGTGCGGATTCGTTTGGAAGTTCAGGGACTTTTGAAAGTGAtggt                                                  <  2:9444711/139‑1 (MQ=11)

                                                                                     cGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGGGCTGGTGG                                                >  2:6947892‑M1/1‑140 (MQ=255)

                                                                                     cGGGTCGGTGCCTGCGGCAACGCTCGCGCGCTGACGCTCGAGCCGAACCGTCGTCGAAGCTTCTCAACCTTCCCCGCCTGGGCAGAATACTTGATTGCGGAGTCGCTTGAGCGTTCAGGGACTTTTGCAAGTGAtggtgg                                                <  2:6137930/140‑1 (MQ=255)

                                                                                      gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAATCTTATCATCCTTCCCCGCCTGGGCAGAATATTTAATTGGGGATTCGTTGGGCAGTTCAGGGACGTTTTAAAGTGATGGTGGT                                               >  2:5218107‑M1/1‑140 (MQ=255)

                                                                                      gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCa                                                                                                                          >  1:11254408/1‑65 (MQ=25)

                                                                                          cGTTGCCTGCGGCAACGCGATCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCACATCCTTCCCCGCAAGGGCAGAAAAGTTAAATGCGGAGTGGTTGGGAAGTTCAGGGACGTTTGAAAGTGTTGGGTGTgggg                                           >  1:11143278/1‑140 (MQ=14)

                                                                                           gTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGGGTCGCACCGTGGGCGAAGCTTCTCATCCGTCCCCGCCTGGGCCGGATATTGATTTTGGGATTCGTTGGGAAGGTCAGGGACGTTTGAAAGTGATGGTGGTggggg                                          >  2:4092411/1‑140 (MQ=9)

                                                                                            ttGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGA                                         <  1:2370260‑M1/140‑1 (MQ=255)

                                                                                            gtgCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGA                                         <  2:2717322‑M1/139‑1 (MQ=255)

                                                                                                    ggCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcg                                 <  1:1534589‑M1/140‑3 (MQ=255)

                                                                                                      cAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCCTGGGCCGAATATTTAATTGCGGATTCGTTGGGTAGTTCAGGGACTGTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaa                               >  2:5570502‑M1/1‑136 (MQ=255)

                                                                                                      cAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaa                               <  1:10012918‑M1/140‑5 (MQ=255)

                                                                                                         cGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaacct                            >  2:3742573‑M1/1‑133 (MQ=255)

                                                                                                          gCTCTCTCGCTGGCGCTCTAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaacctt                           <  2:3832112‑M1/140‑9 (MQ=255)

                                                                                                            tctctcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcg                         <  2:7548962‑M1/140‑11 (MQ=255)

                                                                                                                tcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGGTGGGAAGTTCAGGGACTTTTGAAAGGGATGGTGGTGGGGGAAGGATTcgaaccttcgaagt                     >  1:10336002‑M1/1‑126 (MQ=255)

                                                                                                                     ggcgcTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatg                >  1:3570561‑M1/3‑121 (MQ=255)

                                                                                                                        gCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaacttcgaagtcgatgacg             >  2:5622646‑M1/1‑118 (MQ=255)

                                                                                                                        gCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagacgatgacg             >  2:10615260‑M1/1‑118 (MQ=255)

                                                                                                                         ctctAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGTGCAGAATATTTTATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgg            <  1:8285567‑M1/140‑24 (MQ=255)

                                                                                                                         cTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgg            <  2:11013353‑M1/140‑24 (MQ=255)

                                                                                                                         cTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGCAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgg            <  1:10601270‑M1/140‑24 (MQ=255)

                                                                                                                         cTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgg            <  2:11218286‑M1/140‑24 (MQ=255)

                                                                                                                         cTCGAGTCGAACCGTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgg            <  1:5747676‑M1/140‑24 (MQ=255)

                                                                                                                          tCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATGCGTTGGGAAGTTCAGGGACTTGTGATAGTGATGGTGGGGGGGGAAGGATTcgaaccatcgacgtcgatgacggc           >  1:4087005‑M1/1‑116 (MQ=255)

                                                                                                                          tCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCAGGGGCAGAATATTTAATTGCGGATTCGTTGGGACGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgtcggc           >  2:7697671‑M1/1‑116 (MQ=255)

                                                                                                                           ctagtcgaaccTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTGGCCAGGTCCGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggca          <  1:2501813‑M1/135‑26 (MQ=255)

                                                                                                                           cGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggca          <  1:2933179‑M1/140‑26 (MQ=255)

                                                                                                                              gtcgaACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagat       <  2:8920426‑M1/138‑29 (MQ=255)

                                                                                                                              gtcgaACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagat       >  1:8983756‑M1/3‑112 (MQ=255)

                                                                                                                                 gAACCTTGGTCGAAGCTTCTCATCCTTCCCCGGATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagattta    <  1:9347604‑M1/140‑32 (MQ=255)

                                                                                                                                  aaCCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGTCAGAATATTTTATTGCGGATTCGTTGGTAATTTCAGGGTCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttac   <  1:6208504‑M1/140‑33 (MQ=255)

                                                                                                                                  aaCCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttac   <  1:3742573‑M1/140‑33 (MQ=255)

                                                                                                                                  aaCCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttac   >  2:7388679‑M1/1‑108 (MQ=255)

                                                                                                                                   aCCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttaca  <  1:6354914‑M1/140‑34 (MQ=255)

                                                                                                                                   aCCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgac              <  1:5988472‑M1/128‑22 (MQ=255)

ATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGT  >  NZ_CP025268/1292864‑1293134

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`