BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	1,293,179	A→G	noncoding (36/132 nt)	CXP41_RS06840 ←	RtT sRNA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,293,179	0	A	G	98.5%	527.7 / NA	203	noncoding (36/132 nt)	CXP41_RS06840	RtT sRNA
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (58/141); minor base T (0/3); total (59/144)
Fisher's exact test for biased strand distribution p-value = 5.59e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 203 total aligned reads displayed.

AAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTA  >  NZ_CP025268/1293059‑1293310

gaGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACCCTCTCTCGCTGGCGCGCGAGTCGAACCGTGGTGGAAGCTTCTcatccatc                                                                                                                   >  1:1385444/2‑140 (MQ=14)

     cAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGc                                                                                                              <  1:1771578/140‑1 (MQ=255)

     cAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGc                                                                                                              <  1:4414222/140‑1 (MQ=255)

     cAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGGCGAAGCTTCTCATCCTTCCCCGc                                                                                                              >  1:9012066/1‑140 (MQ=255)

     cAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCCCATCGCCCTTCGGGTCGTTGCCTGAGGCAAACAACTCTCACAGGCCCACCAGACGAACCTTTGTAGAACATTCAAATCCTTcccccc                                                                                                              >  1:2678737/1‑138 (MQ=2)

     cAGGGACTTGTGAATCTGATCCTGGTGGGGGACGGATTACTCAGCGCTGCGCGCTTCGCCCGTCGGGGCGTTGCCGGCGGCAACGCGCGCGCGCTGGCCCTCGAGTCGAACCTTAGTCCAAGGTTCTCACCCTGCCCCgg                                                                                                              >  2:9048129/1‑139 (MQ=2)

      aGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGAGGCAACGCACTCTCGCTGGCGCTCGAGTCGAACCATGGTAGAATCATATCAACCATCCCCGCa                                                                                                             >  1:1872954/1‑140 (MQ=11)

        ggACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATg                                                                                                           >  2:2588317/1‑140 (MQ=255)

            ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                       <  2:1432221/140‑1 (MQ=12)

             tttGAAAGTGATGGTGGTGGTGGACGGATTACTCAGCGCTGAGGGCTTCGCCGTTCGGGTCGTTGCCTGCGGAAACGCTCTCTCGCTGGCGCGCGAGTCGAACATTGGTCGAAGCTTCTCATCCTACCCCGCATGGGCAg                                                                                                      >  2:10363489/1‑140 (MQ=11)

             tttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAg                                                                                                      >  2:10676905/1‑140 (MQ=12)

             tttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCACGCATGGGCAg                                                                                                      >  2:9324475/1‑140 (MQ=255)

             tttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAAACTTTGTCGAATCTTCTCATCCATCCCCGCATGGGccg                                                                                                      >  1:2365558/1‑138 (MQ=11)

             tttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGACTCGAACCTTGGTCGAAGCTTCTCAACCATCCCCGCATggggcg                                                                                                      >  1:3793900/1‑137 (MQ=11)

                  aaGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTTAGAGCTTCTCCGAACGTGTCGTTGCCTGCCGCAAAGCACTCTCGGTTGCCCAAGAGTCGAACCTTGCTAGTATCTTCTCATCCTTCCCAGACTGGGCAgcaaat                                                                                                 >  2:4463535/1‑135 (MQ=2)

                                          tACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGt                                                                        <  2:8639090/140‑1 (MQ=14)

                                             tCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCTAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCa                                                                     <  2:166353/140‑1 (MQ=255)

                                              cAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAg                                                                    <  2:5882022/140‑1 (MQ=18)

                                               aGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAgg                                                                   <  2:6185066/140‑1 (MQ=21)

                                                gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                                  <  1:8129044/140‑1 (MQ=21)

                                                gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                                  <  1:10335648/140‑1 (MQ=21)

                                                gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                                  <  1:7471368/140‑1 (MQ=21)

                                                gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                                  <  1:6808051/140‑1 (MQ=21)

                                                 cgcTGCGCGCTTCGCCCTTCGGGTCGTTGGCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGCACCTTGGTCGGAGCTTGTCATCCTTCCCCGCGTGGGGAGAATCATTTG‑TTGCGGCGTGGGTTGAGAGttacgggg                                                                 >  1:8802813/1‑134 (MQ=0)

                                                 cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAATTCGAACCGGTGTCGTAGCTTCTCATCCTTCCCCGCTTGGGCAGTAT‑ATTTGATTGCGGATGGGTTTGTGAGttacgggg                                                                 >  2:10496744/1‑134 (MQ=1)

                                                 cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGa                                                                 >  2:8290223/1‑140 (MQ=25)

                                                 cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGAGTGGGAGTTCAGGGa                                                                 >  2:1534589/1‑140 (MQ=11)

                                                 cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCGTAGTCGAAGCTTCTCAACCGTCCCCGCATGGGCAGAAT‑ATTTGATTTCGGATTCGCTTGTGAGTTGAgggg                                                                 >  1:8920426/1‑139 (MQ=11)

                                                 cgcTGCGCGCTTCGCCCTTCGGGTCGTGGCCTGCGGCAACGCTCTCTCGCTGACGCGCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCCGAAT‑ATTTGATTGCGGTTTCGCTTGAGAGTTCAGGGa                                                                 >  1:10805797/1‑140 (MQ=11)

                                                  gcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGAc                                                                <  1:5073867/140‑1 (MQ=255)

                                                      cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGACCCTTAGGCGAAGCTTCTCAACCTTCCCCGCATGGGCCGAAT‑ATTTGATTGCGGATTCGCGTGGGGGTTCAGGGGCtttg                                                            >  1:9525346/1‑139 (MQ=11)

                                                      cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACcttt                                                            <  2:9495399/140‑1 (MQ=255)

                                                       gcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCGGACGCTCGAGCCGAACCGTAGTCGAAGCTTCTCATCCGTCCCCGCCTGGGCCGTAT‑ATTTGTTTGCGGAGTCGGTTGAGAGTTCAGGGGCTtgtg                                                           >  1:11293163/1‑140 (MQ=11)

                                                        cgcgTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGa                                                          <  1:6745595/140‑1 (MQ=255)

                                                         gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaa                                                         <  1:913764/140‑1 (MQ=255)

                                                          cTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCTCTGACGCTCTAGCCGAACCTTAGTCGAAGATTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaaa                                                        <  2:11038405/140‑1 (MQ=11)

                                                           ttCGCCCTTCGGGTCGTTGCCTGCGGCATCGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAg                                                       <  1:3116109/140‑1 (MQ=255)

                                                           ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTTCGGATTCGCTTGAGAGTTCATGGACTTTTGAAAg                                                       >  2:10169867/1‑140 (MQ=255)

                                                           ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGGTTGTGAGTTCAGGGACTTTTGAAAg                                                       >  2:10783114/1‑140 (MQ=255)

                                                           ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCGTAGTCGAAGCTTCTCATCCTTACCCGCAGGGGCAGAAT‑ATTTGATTGCGGATTCGCGTGGGAGTTCAGGGACTTTTGAAAg                                                       >  1:11218286/1‑140 (MQ=11)

                                                           ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAAACTTAGTAGAAGCTTATCATACTTGCCCGCATGGGGCGAAT‑ATTTTATTGCGGATTCGCTTGAGAGTTCAGTGACTTTTGTAAg                                                       >  1:9299581/1‑140 (MQ=11)

                                                             cGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTg                                                     <  1:4343417/140‑1 (MQ=255)

                                                             cGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTACCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTg                                                     >  2:3339931/1‑140 (MQ=255)

                                                              gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCTAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGa                                                    <  1:10165999/140‑1 (MQ=255)

                                                              gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGa                                                    <  2:2970632/140‑1 (MQ=255)

                                                              gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGa                                                    <  1:1712903/140‑1 (MQ=255)

                                                                ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtg                                                  <  1:8840187/140‑1 (MQ=255)

                                                                ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtg                                                  >  2:7560571/1‑140 (MQ=255)

                                                                ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtg                                                  <  1:6247039/140‑1 (MQ=255)

                                                                ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtg                                                  <  1:10528120/140‑1 (MQ=255)

                                                                  ttCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggt                                                <  1:11183742/140‑1 (MQ=255)

                                                                   tCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTCGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtg                                               <  2:1208852/140‑1 (MQ=255)

                                                                    cGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtgg                                              <  1:7482837/140‑1 (MQ=255)

                                                                    cGGGTCGGTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCAGCCTTCCCCGCATGGGCAGTAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGCCGTTTGAAAGTGAtggtgg                                              <  2:1912965/140‑1 (MQ=11)

                                                                     gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtggt                                             <  1:4118835/140‑1 (MQ=255)

                                                                     gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGACTTCAGGGTCTTTTGAAAGTGAtggtggt                                             <  2:8091526/140‑1 (MQ=11)

                                                                     gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtggt                                             <  1:5727979/140‑1 (MQ=255)

                                                                     gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtggt                                             <  1:346771/140‑1 (MQ=255)

                                                                        tCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCTAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggg                                          <  1:9731419/140‑1 (MQ=11)

                                                                        tCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCCGGGACTTTTGAAAGTGATGGTGGTggg                                          <  2:3707688/140‑1 (MQ=12)

                                                                        tCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggg                                          <  2:7017623/140‑1 (MQ=255)

                                                                        tCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGCGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggg                                          <  1:8448261/140‑1 (MQ=255)

                                                                          ggtGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTATTTCGAAGCTTCTCAACCTTCACCGCCTGGGCAGAAT‑ATTTGATTGCGGATTAGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                        <  2:6518462/138‑1 (MQ=11)

                                                                          gTTGCCTGCGGCAACGCTCTCTCGCTGCCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCGTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                        <  1:4933316/140‑1 (MQ=255)

                                                                          gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGCGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                        <  2:9450727/140‑1 (MQ=255)

                                                                          gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTTGTCTAAGCTTCTCATCCGTCCCCGCTTGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGCCTTTTGAAAGTGATGGTGGTggggg                                        <  2:720141/140‑1 (MQ=11)

                                                                          gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                        <  1:11029700/140‑1 (MQ=255)

                                                                          gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                        <  2:6270428/140‑1 (MQ=255)

                                                                          gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                        <  2:672257/140‑1 (MQ=255)

                                                                          gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                        <  1:7945008/140‑1 (MQ=255)

                                                                          gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                        <  2:907164/140‑1 (MQ=255)

                                                                          gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                        <  1:10444980/140‑1 (MQ=255)

                                                                          gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                        <  1:9874706/140‑1 (MQ=255)

                                                                          gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                        <  1:3986440/140‑1 (MQ=255)

                                                                          gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                        <  1:9005208/140‑1 (MQ=255)

                                                                          gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                        <  1:2203131/140‑1 (MQ=255)

                                                                          gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                        <  1:10760293/140‑1 (MQ=255)

                                                                          gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                        <  1:2742514/140‑1 (MQ=255)

                                                                          gTTGCCTGCGGCAACGCTCTCTCGCTGAAGGTCGAGCCGAACCTTAGTCGAAGCTTCTCAACCTTCCCCGCATGGGCATACT‑ATTTGATTGCGGATGCGCGTGAGCGTTCAGGGACTGTTGTTTGTGTTGGTGGTggggg                                        >  2:8740476/1‑140 (MQ=11)

                                                                          gTTGCCTGCGGCAACGCTCTCTCGCAGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGACT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                        <  1:642603/140‑1 (MQ=255)

                                                                            tGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTCGTCGAAGCTTCTCATCCTTCCCCGCATGGGGAGTCT‑ATTTGTTTGCGGATTCGGTGGAGAGTTCGGGGACGTGTGAAAGTGAGGGTggggggggga                                      >  2:10318604/1‑138 (MQ=11)

                                                                             gCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAg                                     <  1:1198983/140‑1 (MQ=255)

                                                                               cTGCGGCACCGCTCTCTCGCTGACGCTCCAGCCGAACCTTCGTCGAAGCTTCACATCCTTCCCCGCAGGGGCAGATT‑ATTTGATTCCGGATGCGTTAGAGCGTTCCGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                                   <  2:6344872/140‑1 (MQ=11)

                                                                               cTGCGGCAACGCTCTCTCGCTGTCGCTCTAGTCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                                   <  2:10595092/140‑1 (MQ=255)

                                                                               cTGCGGCAACGCTCTCTCGCTGTCGCTCTAGCCGAACCTGTGTCGAAGCTTCTCATCCTTACCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGATTGAGAGTTCCGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                                   <  2:2640589/140‑1 (MQ=11)

                                                                               cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                                   <  2:3912496/140‑1 (MQ=255)

                                                                               cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCATAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                                   <  2:1130205/140‑1 (MQ=255)

                                                                               cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                                   <  1:5062713/140‑1 (MQ=255)

                                                                                    gCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTCGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttact                              <  2:6018345/140‑4 (MQ=255)

                                                                                    gCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttact                              <  1:11115502/140‑4 (MQ=255)

                                                                                    gCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttact                              <  1:6046619/140‑4 (MQ=255)

                                                                                    gCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCGTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttact                              <  1:7559721/140‑4 (MQ=255)

                                                                                       aCGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttactcag                           <  1:301656/140‑7 (MQ=255)

                                                                                       aCGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttactcag                           <  1:1104893/140‑7 (MQ=255)

                                                                                        cGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                        <  2:5061637/126‑1 (MQ=255)

                                                                                                    ggCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCAGGGGCAGAAT‑ATTTAATTGCGGATTCGGTGGGAAGTTCAGGGACTGTTGATAGGGATGGTGGTGGGGGAAGGATTCGAACCGTCGAAGTCGATg              >  2:2394951/1‑140 (MQ=11)

                                                                                                        cTCCAGTCGACCCTTGGTCGTAGCGTCTCAACCGTCCCCGCCTGGGCATACT‑ACTTAATTTGGGATTCGTTGGCACGTTCCGGGACTTTAGCAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACgg          <  1:335082/140‑1 (MQ=9)

                                                                                                          cctgtcGAACCTTGTTCTAAGCTTCTCAACCTTACACGCTTGGGCAGAAT‑TTTTAATTGCGGAGTCGTTACGCAGTTCACGGAAATTTGCAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCa        <  1:940614/135‑1 (MQ=9)

                                                                                                          ccagtcGAACCTTGGTCGAAGCTTCACATCCTTCCCCGCTTGGGCAGAAT‑ATTTCATTGCGGATTCGTTTGCGACTTCAGGGGCTTTTGAAAGTGATGGTGGTGGGGGAACGATTCGAACCTTCGAAGTCGATGACGGCa        <  1:9829904/135‑1 (MQ=17)

                                                                                                          cGAGGCGAACATCAGTCGAAGATGCTGATCCTTCCCCGCATGGGCTGTAT‑ATTTGATTGCGTATTCGCTTGGGAGTTCAGGGACTGTTGATAGTTATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCa        <  2:1326599/140‑1 (MQ=18)

AAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAT‑ATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTA  >  NZ_CP025268/1293059‑1293310

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`