BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	1,416,819	T→C	412 (TAA→TAG)	intR ←	site‑specific integrase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,416,819	0	T	C	99.4%	1832.2 / NA	529	412 (TAA→TAG)	intR	site‑specific integrase
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (235/290); minor base A (1/2); total (237/292)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 529 total aligned reads displayed.

GCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAATTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCTATAAATGCCGGGTTCGCTCCTGCC  >  NZ_CP025268/1416682‑1416954

   tCGCCCACGTTACGACGCAGAAGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGa                                                                                                                                    <  1:9852572/140‑1 (MQ=255)

     gCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATa                                                                                                                                  >  1:7291883/1‑140 (MQ=255)

     gCCCACGTTACGACGCAGACGTTTTTGTAATGTGTTCAGGTGGGATTGTTCTTTCGTTGGAATTTGTTGATTTTCTTGCAGTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATa                                                                                                                                  >  2:3612264/1‑140 (MQ=255)

         aCGTTACTACGCAGACGTTTTTTTAATTTGTTCAGTTTGTATTGTTCTTTCTTTGTTATTTGTTGATTTTCTTGCATTATTTCAGTTATCATGTACTAAATGGTGCAAATTGGTTGCAAACTTTGCAACTACTATAACcg                                                                                                                              <  2:6337453/140‑1 (MQ=255)

         aCGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACcg                                                                                                                              <  1:4708220/140‑1 (MQ=255)

          cGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACcgc                                                                                                                             >  1:3793557/1‑140 (MQ=255)

            ttACGACGCAGACGTTTTTGTTATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCgcgc                                                                                                                           <  2:4551932/140‑1 (MQ=255)

               cgacgCAGACGTTTTTGTAATTTGTTCAGGTTGGATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCAtt                                                                                                                        >  1:4557257/1‑140 (MQ=255)

                gacgCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCAGTc                                                                                                                       >  2:8936387/1‑140 (MQ=255)

                 acgCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCa                                                                                                                      >  1:6360997/1‑140 (MQ=255)

                   gCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGTGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAAc                                                                                                                    <  1:3641487/140‑1 (MQ=255)

                   gCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAAc                                                                                                                    <  1:10898842/140‑1 (MQ=255)

                   gCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAAc                                                                                                                    <  1:7162808/140‑1 (MQ=255)

                   gCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCGTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAAc                                                                                                                    <  2:10412312/140‑1 (MQ=255)

                    cAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACa                                                                                                                   <  1:10984598/140‑1 (MQ=255)

                     aGACTTTTTTGTAATTTGTTCAGGTTGTATTTTTCTTTCTTTGTAATTTGTTGATGTTCTTGCATTATTTAAGTTGTCTGGTACTATATGGGGCAAATTTGGGGCTCAAGTTGAAAGTACGATAGCCGGGCCttatacag                                                                                                                  >  2:7281612/1‑134 (MQ=255)

                     aGACGTTTTTTTAATTTGTTCAGGTGGGATTGTTCTTTATTTGTAATTTGTTGATTTTCTTGCATTATATCAGTTCTCTGGTCCTAAATGGGGCAATGTGGGGGCAAACTGTGAAACTAAGATAACCGCGCATTCAACAt                                                                                                                  >  2:756369/1‑140 (MQ=255)

                     aGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACAt                                                                                                                  >  1:4286562/1‑140 (MQ=255)

                     aGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACAt                                                                                                                  >  2:1413637/1‑140 (MQ=255)

                     aGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGGTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACAt                                                                                                                  >  1:2308311/1‑140 (MQ=255)

                     aGACGTTTTTGTAATTAGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCCTTATTTCAGTTCTCTGGTACTAAAGGGGGCAAATTGGGGGCAAACGTTGCAACTACGATAACCGCGCATTCAACag                                                                                                                  >  1:10748378/1‑139 (MQ=255)

                       aCGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATgg                                                                                                                >  1:2829774/1‑140 (MQ=255)

                       aCGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATgg                                                                                                                >  1:6593002/1‑140 (MQ=255)

                       aCGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATgg                                                                                                                >  1:2509486/1‑140 (MQ=255)

                       aCGTGTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATgg                                                                                                                >  2:239076/1‑140 (MQ=255)

                       aCGTGTTTGTAATTTGTTCAGGTTGTATTGTTCGTTCTTTGTAATTTGTTTATTTTCTTGCATTATTTAAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATgg                                                                                                                >  1:2235461/1‑140 (MQ=255)

                           ttttGTAATTGGTTCAGGTTGTATTGTTCTTTCTTTGTAATTGGTTGATTTTCTTGCATTATGTCAGTTCTCTGGGACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTAt                                                                                                            <  2:5541658/140‑1 (MQ=255)

                            tttGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATc                                                                                                           >  1:8426463/1‑140 (MQ=255)

                            tttGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATc                                                                                                           >  1:9403577/1‑140 (MQ=255)

                            tttGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATc                                                                                                           >  2:4232605/1‑140 (MQ=255)

                                     tGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTtcgtcg                                                                                                  <  1:3259550/140‑1 (MQ=255)

                                     tGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTtcgtcg                                                                                                  >  1:3998715/1‑140 (MQ=255)

                                       ttCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGtt                                                                                                <  1:8850461/140‑1 (MQ=255)

                                       ttCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTGTGCAACTACGATAACCGCGCATTCAACTTGGCTATCTGTTCGTCGtt                                                                                                >  2:3211110/1‑140 (MQ=255)

                                            gTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGt                                                                                           <  2:5828987/140‑1 (MQ=255)

                                              tGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGtca                                                                                         <  1:7560700/140‑1 (MQ=255)

                                              tGTATTGTTCTTTCTTTGTAATGTGTTGAATTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGAAAATTGGGGGCAAACTGTGCAACTACGAGAACCGCGCATTCAACAGGGCTATCTGTTCGTCGTTCATGtca                                                                                         <  2:10005219/140‑1 (MQ=255)

                                                ttttGTTCTTTCTTTGTTATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCACACTTTGCAACTACGATACCCGCGCATTCAACCTGGCTATCTGTTCGTCGTTCATGtcctc                                                                                       <  2:6782611/138‑1 (MQ=255)

                                                ttttGTTCTTTCTTTGTATTTTGTTGATTTTCTTGCATGATTTCCGTTCTCTGGTACTAAATGGGGCATATTGGGGGCTAACTTTGCAACTTCGATAACCGCGCATTCAACATGGCGATCTGTTCGTCGTTCATGtcatc                                                                                       <  2:6193096/138‑1 (MQ=255)

                                                tATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGtcatc                                                                                       <  1:5413023/140‑1 (MQ=255)

                                                tATTGTTCTTTCTGTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGtcatc                                                                                       <  2:1501226/140‑1 (MQ=255)

                                                 aTTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACTATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGtcatca                                                                                      >  1:3543773/1‑140 (MQ=255)

                                                     ttctttctTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATcc                                                                                  >  1:10502162/1‑140 (MQ=255)

                                                      tctttcttTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCca                                                                                 >  2:5100950/1‑140 (MQ=255)

                                                      tctttcttTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCca                                                                                 >  2:5209771/1‑140 (MQ=255)

                                                      tctttcttTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCca                                                                                 >  1:10015391/1‑140 (MQ=255)

                                                      tctttcttTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCca                                                                                 >  1:3877275/1‑140 (MQ=255)

                                                        tttctttGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCcaca                                                                               <  2:4008138/140‑1 (MQ=255)

                                                         ttctttGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACAt                                                                              <  1:2163379/140‑1 (MQ=255)

                                                          tctttGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATa                                                                             >  1:8545708/1‑140 (MQ=255)

                                                          tctttGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATa                                                                             >  1:9106899/1‑140 (MQ=255)

                                                          tctttGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATa                                                                             >  1:962085/1‑140 (MQ=255)

                                                          tctttGTAATTTGTTGATTTTCTTGCATTATATCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATa                                                                             >  2:6565266/1‑140 (MQ=255)

                                                              tGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGt                                                                         <  2:10615477/140‑1 (MQ=255)

                                                               gTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTa                                                                        >  1:800110/1‑140 (MQ=255)

                                                                tAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTaa                                                                       <  1:10315552/140‑1 (MQ=255)

                                                                 aaTTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTaaa                                                                      <  2:11097454/140‑1 (MQ=255)

                                                                      gttgATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCa                                                                 <  2:8239140/140‑1 (MQ=255)

                                                                         gATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATac                                                              <  1:10221432/140‑1 (MQ=255)

                                                                         gATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTAATGTCATCAATCCACATACCGTAAATTTCATac                                                              <  2:6450000/140‑1 (MQ=255)

                                                                           ttttCTTGCATAATTTCACTACTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATacac                                                            <  1:7002315/140‑1 (MQ=255)

                                                                              tCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCAt                                                         <  2:3925993/140‑1 (MQ=255)

                                                                                   cATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcg                                                    <  2:9587144/140‑1 (MQ=255)

                                                                                     ttattTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCa                                                  <  1:8256879/140‑1 (MQ=255)

                                                                                             gTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATg                                          <  2:8719763/140‑1 (MQ=255)

                                                                                             gTTCTCTGGTACAAAATGGGGCAAAAGGGGGGCACACTTTGCAACAACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCACTCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATg                                          <  2:5321179/140‑1 (MQ=255)

                                                                                              ttCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGc                                         >  2:2172395/1‑140 (MQ=255)

                                                                                              gtctcTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGc                                         <  2:3403725/139‑1 (MQ=255)

                                                                                               acactGGTCCTAACTGGCGCACATTCGTGCCAAACTTGCCCACTACGATCACCGCGCATACACCATGGCGATCTGTCCGTCGGTCATGTCATCAATCCACATCCCGTAAAAATCACACCCCATCTGCGCAGTTTCATGcc                                        <  2:10763184/137‑1 (MQ=255)

                                                                                                ctctGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGccc                                       >  1:6855717/1‑140 (MQ=255)

                                                                                                  ctGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCa                                     >  2:2657353/1‑140 (MQ=255)

                                                                                                  ctGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCa                                     >  1:1982892/1‑140 (MQ=255)

                                                                                                  ctGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGAAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCa                                     >  1:1561871/1‑140 (MQ=255)

                                                                                                     gTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCAttt                                  >  1:3014094/1‑140 (MQ=255)

                                                                                                       aCTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCACTCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTtgg                                <  2:47676/140‑1 (MQ=255)

                                                                                                       aCTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATATCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTtgg                                <  1:6008703/140‑1 (MQ=255)

                                                                                                          aaaTGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTtggctg                             <  1:4862103/140‑1 (MQ=255)

                                                                                                           aaTGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTtggctgg                            >  1:6241103/1‑140 (MQ=255)

                                                                                                           aaTGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTtggctgg                            >  1:1212723/1‑140 (MQ=255)

                                                                                                             tGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCATCATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTggctggct                          >  1:5557189/1‑140 (MQ=255)

                                                                                                             tGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTggctggct                          >  2:1807605/1‑140 (MQ=255)

                                                                                                             tGGGGCAAAGTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCGATCTGTTCGTCGTTCATGTCATCACTCCACATACCGTAAATTTCATACACAATCTGCGCAGTTTCATTCCCCATTTggctggct                          >  2:9487464/1‑140 (MQ=255)

                                                                                                               gggCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCtat                        >  2:2108188/1‑140 (MQ=255)

                                                                                                               gggCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCtat                        >  2:101932/1‑140 (MQ=255)

                                                                                                                ggCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCtcta                       >  1:8637758/1‑140 (MQ=255)

                                                                                                                ggCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCtata                       >  2:5973761/1‑140 (MQ=255)

                                                                                                                ggCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCtata                       >  1:7794865/1‑140 (MQ=255)

                                                                                                                ggCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCtata                       >  1:5187236/1‑140 (MQ=255)

                                                                                                                ggCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCtata                       >  1:8957584/1‑140 (MQ=255)

                                                                                                                ggCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCtata                       >  1:2645575/1‑140 (MQ=255)

                                                                                                                ggCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCtata                       >  2:1210294/1‑140 (MQ=255)

                                                                                                                ggCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATACAACATGGCTATCTGTACGTCGTTCATGTCATCAATCCACCTACCGTAAATTTCATACACCATCTGCGCAGTTTCATGACACATTTGGCTGGCtata                       >  2:6997072/1‑140 (MQ=255)

                                                                                                                     tttGGGGGCTCACTTTGCAACTACGATAACCGCGCATTCAACATGTCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCTATAAATGc                  <  2:9125910/139‑1 (MQ=255)

                                                                                                                     aTTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCTATAAATGc                  <  2:2894806/140‑1 (MQ=255)

                                                                                                                          gggCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCTATAAATGCCGGGt             >  1:5084730/1‑140 (MQ=255)

                                                                                                                           ggCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCTATAAATGCCGGGtt            <  1:11237915/140‑1 (MQ=255)

                                                                                                                             cAACCTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCTATAAATGCCGGGTTCg          <  2:224516/140‑1 (MQ=255)

                                                                                                                                aCTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCTATAAATGCCGGGTTCGCTc       <  2:716623/140‑1 (MQ=255)

                                                                                                                                    tGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCTATAAATGCCGGGTTCGCTCCTGc   <  2:4924837/140‑1 (MQ=255)

                                                                                                                                    cgCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCTATAAATGCCGGGTTCGCTCCTGc   <  1:9275293/139‑1 (MQ=255)

GCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAATTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCTATAAATGCCGGGTTCGCTCCTGCC  >  NZ_CP025268/1416682‑1416954

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`