BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	2,790,751	A→G	pseudogene (333/2252 nt)	CXP41_RS24390 →	alpha‑amylase family glycosyl hydrolase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	2,790,751	0	A	G	100.0%	1253.9 / NA	361	pseudogene (333/2252 nt)	CXP41_RS24390	alpha‑amylase family glycosyl hydrolase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (270/91); total (270/91)

Only 100 of 361 total aligned reads displayed.

AGAAAAAGTTATTAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGAT‑A‑AATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAA  >  NZ_CP025268/2790616‑2790884

aGAAAAAGTTATTAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGttt                                                                                                                                     >  2:546419/1‑140 (MQ=255)

      aGTTATTAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAAc                                                                                                                               <  1:9060892/140‑1 (MQ=255)

            taATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑a                                                                                                                        >  2:280214/1‑140 (MQ=255)

              aTGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑aca                                                                                                                      <  1:10586098/140‑3 (MQ=255)

              aTGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑aca                                                                                                                      <  1:1886582/140‑3 (MQ=255)

                 aTCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGACAGAAAAACATAGGTTTATCAACGAGAT‑acaatg                                                                                                                   >  1:531364/1‑135 (MQ=255)

                 aTCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑acaatg                                                                                                                   <  2:2950025/140‑6 (MQ=255)

                 aTCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑acaatg                                                                                                                   >  1:2249961/1‑135 (MQ=255)

                  tCTGTTAAAAAACGATTATAATATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGa                                                                                                                  >  1:10125446/1‑140 (MQ=255)

                      ttAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGa                                                                                                              >  1:6108994/1‑140 (MQ=255)

                         aaaaaCGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAag                                                                                                           >  1:10469190/1‑140 (MQ=255)

                               gATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGa                                                                                                     <  1:8134413/140‑1 (MQ=255)

                                ataataAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGAt                                                                                                    >  1:7669041/4‑140 (MQ=255)

                                aTTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAaga                                                                                                          >  2:107891/1‑134 (MQ=255)

                                aTTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGAt                                                                                                    >  1:2770899/1‑140 (MQ=255)

                                aTTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGAt                                                                                                    >  2:8237553/1‑140 (MQ=255)

                                aTTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGAt                                                                                                    >  1:5735643/1‑140 (MQ=255)

                                aTTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGAt                                                                                                    >  2:1417611/1‑140 (MQ=255)

                                aTTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGAt                                                                                                    >  1:1665357/1‑140 (MQ=255)

                                     aaaaTTTCCCTTTCTCCAGATACAACTTTCCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAg                                                                                               <  1:8044932/140‑1 (MQ=255)

                                               tttCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTAt                                                                                     >  2:3624684/1‑140 (MQ=255)

                                                             aCTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGc                                                                       >  1:4549851/1‑140 (MQ=255)

                                                               ttACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTg                                                                     >  2:6639805/1‑140 (MQ=255)

                                                                 aCCGAGAGTTGAATAAAGCAGCACAGCGTATCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGgt                                                                                           <  2:8347665/116‑1 (MQ=255)

                                                                 aCCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGgt                                                                                           >  1:8347665/1‑116 (MQ=255)

                                                                 aCCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGaa                                                                   >  2:2728700/1‑140 (MQ=255)

                                                                 aCCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATGGAAAGAGGTGATCACAGCGGTGTTTATCAGTCTGGTCGTGCTGaa                                                                   >  2:3381958/1‑140 (MQ=255)

                                                                  ccGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAAc                                                                  >  1:1495792/1‑140 (MQ=255)

                                                                  ccGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAAc                                                                  <  2:7441565/140‑1 (MQ=255)

                                                                         ttGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCAc                                                           <  2:1682435/140‑1 (MQ=255)

                                                                         ttGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCAc                                                           >  1:8477059/1‑140 (MQ=255)

                                                                              tAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCcaca                                                      <  1:1076873/140‑1 (MQ=255)

                                                                                 agcagcACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATta                                                   >  2:8606744/1‑140 (MQ=255)

                                                                                   cagcaCAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCa                                                            <  2:2681290/129‑1 (MQ=255)

                                                                                   cagcaCAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCa                                                            >  1:2681290/1‑129 (MQ=255)

                                                                                   cagcaCAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATtata                                                 >  2:8929075/1‑140 (MQ=255)

                                                                                      cacaGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCCCCCACATTATATCt                                              >  1:10023295/1‑140 (MQ=255)

                                                                                      cacaGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCt                                              >  2:9796332/1‑140 (MQ=255)

                                                                                      cacaGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCt                                              >  1:3789442/1‑140 (MQ=255)

                                                                                      cacaGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCt                                              >  1:5140147/1‑140 (MQ=255)

                                                                                      cacaGCGTAGCAATACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATAA‑AATGCTTGACTGAGGTGTAAACAGCGTTTTTTATCAGTCTGGGCGTGCTGAACCTTTCACCCACATTATATcg                                              >  2:10013489/1‑139 (MQ=255)

                                                                                         aGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGAc                                           <  2:53479/140‑1 (MQ=255)

                                                                                           cGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGATAGAGGTGATAACAGCGGTGTTTATCACTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACaa                                         >  2:10892993/1‑140 (MQ=255)

                                                                                           cGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTCTGGTCGTGCTGAACATTTCACCCACATTATATCTGACaa                                         >  1:4086784/1‑140 (MQ=255)

                                                                                           cGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACaa                                         >  1:6839916/1‑140 (MQ=255)

                                                                                           cGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACaa                                         >  1:3124439/1‑140 (MQ=255)

                                                                                           cGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACaa                                         >  1:486117/1‑140 (MQ=255)

                                                                                           cGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACaa                                         >  1:9842303/1‑140 (MQ=255)

                                                                                           cGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGAGTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACaa                                         >  2:4499447/1‑140 (MQ=255)

                                                                                             tAGCATTACAGCGNCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACACTGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACNTTTCACCCACATTATATCTGACAAAc                                       >  1:5934178/1‑140 (MQ=255)

                                                                                             tAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAAc                                       >  1:1334011/1‑140 (MQ=255)

                                                                                              aGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAAcc                                      >  1:1833066/1‑140 (MQ=255)

                                                                                                    aCAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTcccc                                <  2:10286013/140‑1 (MQ=255)

                                                                                                     cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑aca                                                                                                                      >  1:3575432/1‑51 (MQ=255)

                                                                                                     cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAg                                                                                               <  2:11274496/76‑1 (MQ=255)

                                                                                                     cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTCTGGTCGTGCTGAACATTTCACCCACAGTATATCTGACAAACCTTccccc                               >  2:7205919/1‑139 (MQ=255)

                                                                                                     cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa                               >  2:9339213/1‑140 (MQ=255)

                                                                                                     cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa                               >  2:5813139/1‑140 (MQ=255)

                                                                                                     cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa                               >  2:2270166/1‑140 (MQ=255)

                                                                                                      aGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCaa                              <  1:11093548/140‑1 (MQ=255)

                                                                                                       gcgcCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCaaa                             >  1:9802365/1‑140 (MQ=255)

                                                                                                        cgcCAGACAGGATAGGAGAAAGAAAAGCATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCaaaa                            >  1:6458715/1‑140 (MQ=255)

                                                                                                        cgcCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACa                                          >  1:4070969/1‑126 (MQ=255)

                                                                                                        cgcCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACa                                          <  2:4070969/126‑1 (MQ=255)

                                                                                                          ccAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATACCAGCGGTGTTTATCAGTATGGTCGTGCTGAACCTTTCCCCCACATTATATCTGACAAACCTTCCCCAAACGa                          >  2:9077181/1‑140 (MQ=255)

                                                                                                          ccAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCATAAGa                          >  2:9695301/1‑140 (MQ=255)

                                                                                                          ccAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGa                          >  2:1331416/1‑140 (MQ=255)

                                                                                                          ccAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGa                          >  1:741243/1‑140 (MQ=255)

                                                                                                             gACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGaaa                                                                                                            <  1:2990073/55‑1 (MQ=255)

                                                                                                             gACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATaa                       >  2:963350/1‑140 (MQ=255)

                                                                                                             gACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATaa                       <  1:3884986/140‑1 (MQ=255)

                                                                                                             gACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATaa                       <  2:3900848/140‑1 (MQ=255)

                                                                                                                 ggATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAatat                   <  1:4762941/140‑1 (MQ=255)

                                                                                                                   aTAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGt                 >  2:9516160/1‑140 (MQ=255)

                                                                                                                    tAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCg                                                                          <  1:7324437/82‑1 (MQ=255)

                                                                                                                       gagaAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCa             >  1:9733963/1‑140 (MQ=255)

                                                                                                                       gagaAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCa             >  2:5597593/1‑140 (MQ=255)

                                                                                                                        agaaagaaAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCat            <  1:2847744/140‑1 (MQ=255)

                                                                                                                         gaaagaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCata           <  2:4375814/140‑1 (MQ=255)

                                                                                                                         gaaagaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCata           <  1:3327722/140‑1 (MQ=255)

                                                                                                                         gaaagaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCata           <  2:7545830/140‑1 (MQ=255)

                                                                                                                          aaagaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGttt                                                                                       >  2:2122005/1‑63 (MQ=255)

                                                                                                                            agaaaAACATAGGTTTATCAACTAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc        >  1:4221733/1‑140 (MQ=255)

                                                                                                                            agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATTAATATGTTGCATATGc        >  2:6334930/1‑140 (MQ=255)

                                                                                                                            agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAATTATGTTGCATATGc        >  1:7123087/1‑140 (MQ=255)

                                                                                                                            agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCata           <  2:610248/137‑1 (MQ=255)

                                                                                                                            agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCat            <  2:5119987/136‑1 (MQ=255)

                                                                                                                            agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc        >  1:6174249/1‑140 (MQ=255)

                                                                                                                            agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc        >  1:5564554/1‑140 (MQ=255)

                                                                                                                            agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc        >  2:4812536/1‑140 (MQ=255)

                                                                                                                            agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc        >  1:6502178/1‑140 (MQ=255)

                                                                                                                            agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc        >  1:1187020/1‑140 (MQ=255)

                                                                                                                            agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc        >  2:10494903/1‑140 (MQ=255)

                                                                                                                            agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc        >  2:1960585/1‑140 (MQ=255)

                                                                                                                            agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc        <  2:4823250/140‑1 (MQ=255)

                                                                                                                            agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAAAATATCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc        >  2:11112047/1‑140 (MQ=255)

                                                                                                                            agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTGATCCGTATGGTCGTGCTGACCTTTTCACCCACAGTATATCGGACAAGGCTTCCCCCCAAGGTAGATTTGTTGGattggc        >  2:7945280/1‑136 (MQ=255)

                                                                                                                             gaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCt       >  2:3184408/1‑140 (MQ=255)

                                                                                                                                 aaCATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTa   >  2:1757778/1‑140 (MQ=255)

                                                                                                                                  aCATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTaa  <  1:9500387/140‑1 (MQ=255)

AGAAAAAGTTATTAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGAT‑A‑AATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAA  >  NZ_CP025268/2790616‑2790884

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`