BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	4,202,215	T→C	intergenic (+199/‑3)	yjaG → / → hupA	YjaG family protein/DNA‑binding protein HU‑alpha

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	4,202,215	0	T	C	100.0%	1995.4 / NA	570	intergenic (+199/‑3)	yjaG/hupA	YjaG family protein/DNA‑binding protein HU‑alpha
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (303/267); total (303/267)

Only 100 of 570 total aligned reads displayed.

GTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTTAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATTACTGAGTCTCTGAAAGAAGGCGATGCTGTACAACTGGTTGGTTTCGGTACCTT  >  NZ_CP025268/4202078‑4202351

gTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCaa                                                                                                                                        <  1:7558025/140‑1 (MQ=255)

     gTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACtgat                                                                                                                                   <  1:1219993/140‑1 (MQ=255)

        tACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGTGTGCTATTCTGGCATTTCCGTCGCAGTCGATGCTTAGCTAGAGATAAACGCAGTGTAAGGCTAAGTTATGAACAAGACTCAACtgatgga                                                                                                                                >  2:7846887/1‑140 (MQ=255)

           aTTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGt                                                                                                                             >  1:38897/1‑140 (MQ=255)

           aTTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGt                                                                                                                             >  1:2820574/1‑140 (MQ=255)

             ttGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGAGAAACACTGTGTAAGGAGACCGTATGACCAAGACTCAACTGATTGATGTaa                                                                                                                           >  2:2578239/1‑140 (MQ=255)

               ggggggCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAAtt                                                                                                                         >  1:5743939/1‑140 (MQ=255)

               ggggggCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAAtt                                                                                                                         >  2:6649766/1‑140 (MQ=255)

               ggggggCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAAtt                                                                                                                         >  2:4363345/1‑140 (MQ=255)

               ggggggCAAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAAtt                                                                                                                         >  2:2479042/1‑140 (MQ=255)

                   ggCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCag                                                                                                                     <  2:10956882/140‑1 (MQ=255)

                    gCGAATAAAAGTGGCTATCGGTGCGTGTATGCATGAGAGTGCTATTCTGGCATTTCCGTCGCTCTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCaga                                                                                                                    <  2:8624907/140‑1 (MQ=255)

                    gCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCaga                                                                                                                    >  1:6704337/1‑140 (MQ=255)

                    gCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCaga                                                                                                                    <  1:6228412/140‑1 (MQ=255)

                    gCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCaga                                                                                                                    <  1:3188737/140‑1 (MQ=255)

                    gCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCaga                                                                                                                    <  2:5461532/140‑1 (MQ=255)

                    gCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCaga                                                                                                                    <  2:4022637/140‑1 (MQ=255)

                              gTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGaa                                                                                                          <  1:2434094/140‑1 (MQ=255)

                              gTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGaa                                                                                                          <  2:3138967/140‑1 (MQ=255)

                               tGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATCAACACATTGTAAGGAGAACTTATGAACAAGACTCATCTGATTGATGTAATTGCTGAGCAAGGAGAAc                                                                                                         >  1:10073781/1‑140 (MQ=255)

                                         tGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAAc                                                                                               >  1:1809750/1‑140 (MQ=255)

                                          gCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAAcc                                                                                              <  1:2305854/140‑1 (MQ=255)

                                           cGTGTTTGCAGGAGAGTGCTATTCTGGCATTTACGTCGCACTCGATGCTTAGCAAGAGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGAAGAGAAAGCAGAACTGTCCAAAAccc                                                                                             >  2:3733870/1‑140 (MQ=255)

                                           cGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTGATGAACAAGACTCAACTGAGTGATGTAATTGCAGAGAAAGCCGAACTGTCCAATAccg                                                                                             >  1:9789685/1‑139 (MQ=255)

                                             tgtATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGAGTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAg                                                                                           >  2:4588046/1‑140 (MQ=255)

                                                   cAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTGATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCtcac                                                                                     >  1:10929172/1‑137 (MQ=255)

                                                    aGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAg                                                                                    <  1:3004572/140‑1 (MQ=255)

                                                    aGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAg                                                                                    <  2:5150964/140‑1 (MQ=255)

                                                     ggAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATCACTTATGAACAAGACTCAACTGAGAGATGTAATTGCAGAGAAAGCAGAAATGTCCAAAACACAGGCTAAAgc                                                                                   >  1:9695965/1‑140 (MQ=255)

                                                      gagaGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGAGTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAgct                                                                                  >  1:4907795/1‑140 (MQ=255)

                                                      gagaGTGCTAGTCTGGCATTTCCGTCGAACTCGATGATTAGCAAGCGATAAACACCGTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAgct                                                                                  >  2:7455450/1‑140 (MQ=255)

                                                        gagTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAgctgc                                                                                >  2:2224480/1‑140 (MQ=255)

                                                         agTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTCAAgctgct                                                                               >  1:5468611/1‑140 (MQ=255)

                                                         agTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAgctgct                                                                               >  2:10740980/1‑140 (MQ=255)

                                                         agTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAgctgct                                                                               <  1:4369527/140‑1 (MQ=255)

                                                         agTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAgctgct                                                                               >  1:11113398/1‑140 (MQ=255)

                                                         agTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACAGTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGACCTGTCCAAAACCCAGGCTAAAgctgct                                                                               >  2:1482044/1‑140 (MQ=255)

                                                          gTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGctc                                                                              >  1:8526472/1‑140 (MQ=255)

                                                           tGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAg                                                                                                               >  2:8359207/1‑106 (MQ=255)

                                                           tGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGctct                                                                             >  2:10840105/1‑140 (MQ=255)

                                                           tGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGctct                                                                             >  1:6506185/1‑140 (MQ=255)

                                                           tGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGctct                                                                             >  2:10027465/1‑140 (MQ=255)

                                                           tGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGctct                                                                             >  2:1657545/1‑140 (MQ=255)

                                                           tGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGctct                                                                             >  2:3383258/1‑140 (MQ=255)

                                                           tGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGctct                                                                             <  2:3632712/140‑1 (MQ=255)

                                                           tGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGctct                                                                             >  1:6886128/1‑140 (MQ=255)

                                                           tGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGATAAAGCTGctct                                                                             >  2:417363/1‑140 (MQ=255)

                                                           tGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGAGTGATGTAATTGCAGAGAAAGCAGAACTGTCCACAACCCAGGCTACAGCTGctct                                                                             >  2:9386890/1‑140 (MQ=255)

                                                             cTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTgg                                                                           >  1:11282086/1‑140 (MQ=255)

                                                                ttCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGt                                                                        >  2:11271811/1‑140 (MQ=255)

                                                                 tCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTc                                                                       <  1:9493317/140‑1 (MQ=255)

                                                                  cTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAAc                                                                                                         >  1:3701353/1‑105 (MQ=255)

                                                                     gCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCACCTGAGTGCTGTAATTGCAGAGAAAGCTGAACTGTCCCTAACCCAGGCTCAAGCTGCTCTGGAGTccccg                                                                   >  2:8194077/1‑137 (MQ=255)

                                                                     gCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCAct                                                                   >  2:803530/1‑140 (MQ=255)

                                                                     gCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCAct                                                                   >  2:9830344/1‑140 (MQ=255)

                                                                     gCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTGATGAACAAGACTCAACTGATTGATGTAATTGCAGAGACAGCAGAACGGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCAct                                                                   >  1:1489386/1‑140 (MQ=255)

                                                                     gCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATGGTAAGGATCACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCAct                                                                   >  1:607525/1‑140 (MQ=255)

                                                                          tCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGc                                                              >  2:7293979/1‑140 (MQ=255)

                                                                          tCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGc                                                              >  1:8309395/1‑140 (MQ=255)

                                                                          tCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGc                                                              <  1:8932421/140‑1 (MQ=255)

                                                                          tCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGc                                                              >  1:8646014/1‑140 (MQ=255)

                                                                          tCCGTCGCACTCGATGCTGAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGc                                                              <  1:7941191/140‑1 (MQ=255)

                                                                              tCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCa                                                          <  2:6062038/140‑1 (MQ=255)

                                                                                  aCTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATTa                                                      <  1:8136879/140‑1 (MQ=255)

                                                                                      gATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATTACTGa                                                  <  2:11049434/140‑1 (MQ=255)

                                                                                      gATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATTACTGa                                                  >  1:8393765/1‑140 (MQ=255)

                                                                                      gATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATTACTGa                                                  <  1:9051258/140‑1 (MQ=255)

                                                                                        tGCTTCGCAAGCGATAAACACATTGTAAGGATCCCTGATGACCAAGACTCAACTGATTGTTGTAATGGCCGAGAAAGCAGAACTGGCCAAACCCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATTACTGAGt                                                <  2:9217765/140‑1 (MQ=255)

                                                                                          cTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATTACTGAGtct                                              <  2:10484851/140‑1 (MQ=255)

                                                                                             aGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATTACTGAGTCTCTg                                           >  1:10397350/1‑140 (MQ=255)

                                                                                             aGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATTACTGAGTCTCTg                                           >  1:4552120/1‑140 (MQ=255)

                                                                                              gCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATTACTGAGTCTCTGa                                          <  1:7625163/140‑1 (MQ=255)

                                                                                              gCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATTACTGAGTCTCTGa                                          >  2:883122/1‑140 (MQ=255)

                                                                                                  gCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATTACTGAGTCTCTGAaaga                                      >  1:10178488/1‑140 (MQ=255)

                                                                                                  gCGATAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATTACTGAGTCTCTGAaaga                                      >  2:8487229/1‑140 (MQ=255)

                                                                                                     aTAAACACATTGTAAGGATACCTTATGAACCAGACTCATCTGATTGATGTAATTGCAGAGAAAGCAGCACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATGACTGAGTCTCTGAAAGAAgg                                   <  2:6872666/140‑1 (MQ=255)

                                                                                                     aTAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTTGCTGCAATTACTGAGTCTCTGAAAGAAgg                                   <  2:1938500/140‑1 (MQ=255)

                                                                                                     aTAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATTACTGAGTCTCTGAAAGAAgg                                   <  1:9297261/140‑1 (MQ=255)

                                                                                                     aTAAACACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATTACTGAGTCTCTGAAAGAAgg                                   <  1:3436063/140‑1 (MQ=255)

                                                                                                        cacacATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATTACTGAGTCTCTGAAAGAAGGCGa                                <  1:6591985/139‑1 (MQ=255)

                                                                                                        aaCACATTGTAAGGATAACTTATGAACAAGACTCACCTGATTGATGTACTTGCAGAGAAAGCAGAACTGTCCATAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATTACTGAGTCTCTGAAAGAAGGCGa                                <  2:616035/140‑1 (MQ=255)

                                                                                                        aaCACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAACCCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATTACTGAGTCTCTGAAAGAAGGCGa                                <  1:939653/140‑1 (MQ=255)

                                                                                                        aaCACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATTACTGAGTCTCTGAAAGAAGGCGa                                <  2:6513860/140‑1 (MQ=255)

                                                                                                        aaCACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATTACTGAGTCTCTGAAAGAAGGCGa                                <  2:7683/140‑1 (MQ=255)

                                                                                                        aaCACATTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATTACTGAGTCTCTGAAAGAAGGCGa                                <  1:7381657/140‑1 (MQ=255)

                                                                                                        aaCACATTGAAAGGATAACTAATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATTACTGAGTCTCTGAAAGAAGGCGa                                <  1:10756107/140‑1 (MQ=255)

                                                                                                          cacaTTGTAAGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATTACTGAGTCTCTGAAAGAAGGCGATg                              <  2:497097/140‑1 (MQ=255)

                                                                                                               tGTAAGGATAACATATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATTACTGAGTCTCTGAAAGAAGGCGATGCTGTa                         <  2:9649189/140‑1 (MQ=255)

                                                                                                                  aaGGATAACTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATTACTGAGTCTCTGAAAGAAGGCGATGCTGTACaa                      <  1:5824739/140‑1 (MQ=255)

                                                                                                                         aCTTATGAACAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATTACTGAGTCTCTGAAAGAAGGCGATGCTGTACAACtggttg               >  1:7167303/1‑140 (MQ=255)

                                                                                                                             aTGAACAAGACTCAACTGATTGATGTACTTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATTACTGAGTCTCTGAAAGAAGGCGATGCTGTACAACtggttggtgt           >  2:1827503/1‑138 (MQ=255)

                                                                                                                                caCAAGCCTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATTACTGAGTCTCTGAAAGAAGGCGATGCTGTACAACTGGTTGGTTTCgg        <  1:6307145/139‑1 (MQ=255)

                                                                                                                                aaCAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATTACTGAGTCTCTGAAAGAAGGCGATGCTGTACAACTGGTTGGTTTCgg        >  1:4134352/1‑140 (MQ=255)

                                                                                                                                aaCAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATTACTGAGTCTCTGAAAGAAGGCGATGCTGTACAACTGGTTGGTGTCgg        >  1:5084279/1‑140 (MQ=255)

                                                                                                                                 aCAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATTACTGAGTCTCTGAAAGAAGGCGATGCTGTACAACTGGTTGGTTTCGGt       <  2:9500262/140‑1 (MQ=255)

                                                                                                                                  cAAGACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCATAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATTACTGTGTCTCTGAAAGAAGGCGATGCTGTACAACTGGTTGGTTTCGGTa      <  2:10276611/140‑1 (MQ=255)

                                                                                                                                     gACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCCATTACTGAGTCTCTGAAAGAAGTCGATGCTGTACAACTGGTTGGTTTCGGTAccg   >  2:6322984/1‑139 (MQ=255)

                                                                                                                                     gACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCACTTACTGAGTCTCTGAAAGAAGGCGATGCTGTACACCTGGTTGGGTTCGGTACCt   >  2:2281202/1‑140 (MQ=255)

                                                                                                                                     gACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATTACTGAGTCTCTGAAAGAAGGCGATGCTGTACAACTGGTTGGTTTCGGTCCCt   >  2:4711221/1‑140 (MQ=255)

                                                                                                                                     gACTCAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATTACTGAGTCTCTGAAAGAAGGCGATGCTGTACAACTGGTTGGTTTCGGTACCt   >  2:5843235/1‑140 (MQ=255)

GTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGACTTAACTGATTGATGTAATTGCAGAGAAAGCAGAACTGTCCAAAACCCAGGCTAAAGCTGCTCTGGAGTCCACTCTGGCTGCAATTACTGAGTCTCTGAAAGAAGGCGATGCTGTACAACTGGTTGGTTTCGGTACCTT  >  NZ_CP025268/4202078‑4202351

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`