BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	1,013,520	+G	pseudogene (463/542 nt)	zapC →	cell division protein ZapC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,013,518	1	.	G	98.8%	2035.7 / 12.3	593	pseudogene (461/542 nt)	zapC	cell division protein ZapC
Reads supporting (aligned to +/- strand): ref base . (5/2); new base G (319/266); total (324/269)
Fisher's exact test for biased strand distribution p-value = 4.65e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 634 total aligned reads displayed.

ATGCCGGGCGATGCGGCCTGCGTTTGGTTGAGCGATACTCACGAGCAGGTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑T‑GGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTTTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCC  >  NZ_CP025268/1013379‑1013652

aTGCCGGGCGATGCGGCCTGCGTTTGGTTGAGCGATACTCACGAGCAGGTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑Gt‑t                                                                                                                                         >  1:9066851/1‑140 (MQ=255)

 tGCCGGGCGATGCGGCCTGCGTTTGGTTGAGCGATACTCACGAGCAGGTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑T‑g                                                                                                                                       >  1:8662282/1‑140 (MQ=255)

 tGCCGGGCGATGCGGCCTGCGTTTGGTTGAGCGATACTCACGAGCAGGTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑T‑g                                                                                                                                       >  2:5390565/1‑140 (MQ=255)

 tGCCGGGCGATGCGGCCTGCGTTTGGTTGAGCGATACTCACGAGCAGGTCAATGTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑T‑g                                                                                                                                       >  1:5598690/1‑140 (MQ=255)

 tGCCGGGCGATGCGGCCTGCGTTGGGTTGAGCGATACTCACGAGCAGGTCAATTTGCTGGTCGGTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑T‑g                                                                                                                                       >  1:4561323/1‑140 (MQ=255)

      ggCGATGCGGCCTGCGTTTGGTTGAGCGATACTCACGAGCCGGTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑T‑gggcgc                                                                                                                                  >  2:3123836/1‑136 (MQ=255)

      ggCGATGCGGCCTGCGTTTGGTTGAGCGATACTCACGAGCAGGTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑T‑gggcga                                                                                                                                  <  1:10899224/140‑5 (MQ=255)

       gCGATGCGGCCTGCGTTTGGTTGAGCGATACTCACGAGCAGGTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑T‑gggcgac                                                                                                                                 >  1:10099783/1‑135 (MQ=255)

       gCGATGCGGCCTGCGTTTGGTTGAGCGATACTCACGAGCAGGTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑T‑gggcgac                                                                                                                                 <  1:9461137/140‑6 (MQ=255)

       gCGATGCGGCCTGCGTTTGGTTGAGCGATACTCACGAGCAGGTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑T‑gggcgac                                                                                                                                 >  1:4425159/1‑135 (MQ=255)

       gCGATGCGGCCTGCGTTTGGTTGAGCGATACTCACGAGCAGGTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑T‑gggcgac                                                                                                                                 >  2:4409622/1‑135 (MQ=255)

        cGATGCGGCCTGCGTTTGGTTGAGCGATACTCACGAGCAGGTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACg                                                                                                                                 >  1:9905097/1‑140 (MQ=255)

        cGATGCGGCCTGCGTTTGGTTGAGCGATACTCACGAGCAGGTCAATTAGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACg                                                                                                                                 >  2:9383932/1‑140 (MQ=255)

              ggCCTGCGTTTGGTTGAGCGATACTCACGAGCAGGTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTa                                                                                                                           <  1:1194663/140‑1 (MQ=255)

                ccTGCGTTTGGTTGAGCGATACTCACGAGCAGGTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCAGCACGATGCCTGCTGGCACAACCATGCTTTGTTATTGAGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATGaaa                                                                                                                         >  2:7347874/1‑140 (MQ=255)

                 cTGCGTTTGGTTGAGCGATACTCACGAGCAGGTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTaaaa                                                                                                                        <  1:10591383/140‑1 (MQ=255)

                  tGCGTTTGGTTGAGCGATACTCACGAGCAGGTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAAt                                                                                                                       >  1:7268141/1‑140 (MQ=255)

                   gCGTTTGGTTGAGCGATACTCACGAGCAGGTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATc                                                                                                                      >  1:6183831/1‑140 (MQ=255)

                   gCGTTTGGTTGAGCGATACTCACGAGCAGGTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCAATATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATc                                                                                                                      <  1:4118765/140‑1 (MQ=255)

                    cGTTTGGTTGAGCGATACTCACGAGCAGGTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCa                                                                                                                     >  2:10353876/1‑140 (MQ=255)

                        tGGTTGAGCGATACTCACGAGCAGGTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGaa                                                                                                                 >  1:7932033/1‑140 (MQ=255)

                         ggTTGAGCGATACTCACGAGCAGGTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCCCAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GTGG‑GGCGACGCCATTATAATCATGAAc                                                                                                                >  2:119625/1‑140 (MQ=255)

                          gTTGAGCGATACTCACGAGCAGGTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACg                                                                                                               >  2:1321748/1‑140 (MQ=255)

                              aGCGATACTCACGAGCAGGTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAg                                                                                                           >  1:484354/1‑140 (MQ=255)

                                   tACTCACGAGCAGGTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGa                                                                                                      >  1:3882848/1‑140 (MQ=255)

                                   tACTCACGAGCAGGTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGa                                                                                                      <  2:10161969/140‑1 (MQ=255)

                                       cACGAGCAGGTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAAcc                                                                                                  <  1:673469/140‑1 (MQ=255)

                                        aCGAGCAGGTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCg                                                                                                 <  2:8870435/140‑1 (MQ=255)

                                          gAGCAGGTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCa                                                                                               >  2:7556926/1‑140 (MQ=255)

                                             ctggTCCATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAATCTCATGCACGACAGGCTGAAACCGCAGGt                                                                                            >  2:516810/3‑140 (MQ=255)

                                             cAGGTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGt                                                                                            >  2:9092312/1‑140 (MQ=255)

                                             cAGGTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGt                                                                                            >  1:10739202/1‑140 (MQ=255)

                                             cAGGTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGt                                                                                            <  2:10494840/140‑1 (MQ=255)

                                             cAGGTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGt                                                                                            >  2:1463750/1‑140 (MQ=255)

                                             cAGGTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGt                                                                                            >  2:3570477/1‑140 (MQ=255)

                                             cAGGTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCAACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGt                                                                                            >  2:6467281/1‑140 (MQ=255)

                                              aGGTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTCTGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGtt                                                                                           <  1:8244987/140‑1 (MQ=255)

                                               ggTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTa                                                                                          <  1:5363820/140‑1 (MQ=255)

                                                gTCAATTTGGTGGTCGTTGAATCTGGCGAAAATGCCGAACTATGCCTGCTGGCACAACCCGGCGTTGTTAGTGCGGGTCGCGCGATGCAGGT‑G‑GGCGTCGCCATTAAAATAAGGAACGACAGGCTGACACCGCAGGTGaa                                                                                         >  2:11186972/1‑140 (MQ=255)

                                                gTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTaa                                                                                         >  2:10958929/1‑140 (MQ=255)

                                                gTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTaa                                                                                         >  1:4017015/1‑140 (MQ=255)

                                                       tGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGAc                                                                                  <  1:9340800/140‑1 (MQ=255)

                                                           ggTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTATTGTTGACAGCt                                                                              <  2:5105009/140‑1 (MQ=255)

                                                               gTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGNAACCGCAGGTTAATGTTGACAGCTTCAg                                                                          >  1:6020358/1‑140 (MQ=255)

                                                                ttGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGc                                                                         <  1:1248520/140‑1 (MQ=255)

                                                                 tGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACCGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGcc                                                                        <  2:9758196/140‑1 (MQ=255)

                                                                          cGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAgg                                                               <  1:888116/140‑1 (MQ=255)

                                                                          cGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAgg                                                               <  2:2633872/140‑1 (MQ=255)

                                                                          cGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGAGGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAgg                                                               <  1:11109707/140‑1 (MQ=255)

                                                                                   cGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGCTGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAAc                                                      >  1:2388687/1‑140 (MQ=255)

                                                                                   cGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAAc                                                      >  1:8505978/1‑140 (MQ=255)

                                                                                   cGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAAc                                                      >  2:2092228/1‑140 (MQ=255)

                                                                                      aCTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAAcgcg                                                   <  1:3510265/140‑1 (MQ=255)

                                                                                             ctgctgGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACtt                                            <  2:6083927/140‑1 (MQ=255)

                                                                                             ctgctgGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACtt                                            <  1:6475585/140‑1 (MQ=255)

                                                                                               gctgGCACAACCCGGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTaa                                          >  1:1894968/1‑140 (MQ=255)

                                                                                                ctgGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACa                                                                                                            >  1:5836334/1‑73 (MQ=255)

                                                                                                ctgGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAg                                         >  1:7036048/1‑140 (MQ=255)

                                                                                                  ggCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTg                                       >  1:8766542/1‑140 (MQ=255)

                                                                                                    cacaACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGTCCGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTCAGTGCa                                     >  2:7028665/1‑140 (MQ=255)

                                                                                                    cacaACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCa                                     >  1:11221827/1‑140 (MQ=255)

                                                                                                    cacaACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCa                                     <  2:8621201/140‑1 (MQ=255)

                                                                                                    cacaACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCa                                     >  1:3710932/1‑140 (MQ=255)

                                                                                                    cacaACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCa                                     >  2:7963706/1‑140 (MQ=255)

                                                                                                    cacaACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCa                                     >  1:7736950/1‑140 (MQ=255)

                                                                                                      caACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGATACCGCATGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGt                                   <  2:10813914/140‑1 (MQ=255)

                                                                                                      caACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGt                                   >  2:8389504/1‑140 (MQ=255)

                                                                                                      caACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGt                                   <  1:11395240/140‑1 (MQ=255)

                                                                                                      caACCCTGCGTGGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGt                                   <  2:7707624/140‑1 (MQ=255)

                                                                                                        aCCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCt                                 >  2:4644805/1‑140 (MQ=255)

                                                                                                         cccTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCtt                                <  2:5759702/140‑1 (MQ=255)

                                                                                                          ccTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTc                               <  1:1311078/140‑1 (MQ=255)

                                                                                                          ccTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTc                               <  2:1878822/140‑1 (MQ=255)

                                                                                                            tGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCgg                             <  1:7523365/140‑1 (MQ=255)

                                                                                                             gCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGt                            >  1:2588183/1‑140 (MQ=255)

                                                                                                              cGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTa                           >  2:2368253/1‑140 (MQ=255)

                                                                                                              cGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTa                           <  2:3974710/140‑1 (MQ=255)

                                                                                                              cGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTa                           <  2:5947226/140‑1 (MQ=255)

                                                                                                                   ttATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCt                                                                       >  1:9611926/1‑91 (MQ=255)

                                                                                                                   ttATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCt                                                                       <  2:9611925/91‑1 (MQ=255)

                                                                                                                   ttATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAg                      >  1:10307203/1‑140 (MQ=255)

                                                                                                                   ttATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAg                      >  1:3315250/1‑140 (MQ=255)

                                                                                                                   ttATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAg                      >  1:922745/1‑140 (MQ=255)

                                                                                                                   ttATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAg                      >  1:4304117/1‑140 (MQ=255)

                                                                                                                   ttATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAg                      >  2:3218303/1‑140 (MQ=255)

                                                                                                                   ttATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTACGGTACACAg                      >  2:11356302/1‑140 (MQ=255)

                                                                                                                    tATTGCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGc                     <  1:10385479/140‑1 (MQ=255)

                                                                                                                        gCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAgg                                                               >  1:6894815/1‑94 (MQ=255)

                                                                                                                        gCGGGTCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACa                 >  1:1579600/1‑140 (MQ=255)

                                                                                                                             tCGCGCGATGCAGGT‑G‑GGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTGCATGGGGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCCGTCTTCGGTACACAGCTACAGCaaa            >  2:5530286/1‑140 (MQ=255)

                                                                                                                             tCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCaaa            >  1:9804102/1‑140 (MQ=255)

                                                                                                                             tCGCGCGATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCaaa            >  1:2273675/1‑140 (MQ=255)

                                                                                                                             tCGCGCGATGCA‑GT‑TGGGCGACGCCAATAAAATCATGACCGACAGGCTGACACCGCAGGATAATGGTGACAGCTTCAGCCTCGACCAGGCAGTCGAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCaaa            <  2:6256721/140‑1 (MQ=255)

                                                                                                                              cgcgcgATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAg           <  1:5078080/140‑1 (MQ=255)

                                                                                                                                cgcgATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGaa         >  2:6782618/1‑140 (MQ=255)

                                                                                                                                cgcgATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGaa         >  1:2887811/1‑140 (MQ=255)

                                                                                                                                cgcgATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGaa         >  2:4195153/1‑140 (MQ=255)

                                                                                                                                 gcgATGCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAAt        <  2:3372578/140‑1 (MQ=255)

                                                                                                                                     tGCA‑GT‑TGGGCGACGCCCATAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTAGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTg    <  2:2878048/140‑1 (MQ=255)

                                                                                                                                      gCA‑GT‑TGGGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTCTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGc   <  1:3419776/140‑1 (MQ=255)

ATGCCGGGCGATGCGGCCTGCGTTTGGTTGAGCGATACTCACGAGCAGGTCAATTTGCTGGTCGTTGAATCTGGCGAAAATGCCGCACTATGCCTGCTGGCACAACCCTGCGTTGTTATTGCGGGTCGCGCGATGCA‑GT‑T‑GGCGACGCCATTAAAATCATGAACGACAGGCTGAAACCGCAGGTTAATGTTGACAGCTTCAGCCTCGAACAGGCAGTTTAACGCGCCAACTTAAGTGCAGTCTTCGGTACACAGCTACAGCAAAGAATGGTGCC  >  NZ_CP025268/1013379‑1013652

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`