| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,075,387 | +T | intergenic (+29/+226) | ymdF → / ← rutG | general stress protein/pyrimidine utilization transport protein G |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,075,387 | 1 | . | T | 99.6% | 2030.7 / NA | 537 | intergenic (+29/+226) | ymdF/rutG | general stress protein/pyrimidine utilization transport protein G |
| Reads supporting (aligned to +/- strand): ref base . (2/0); major base T (227/306); minor base A (0/2); total (229/308) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.11e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 543 total aligned reads displayed.
TAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAACCGGGCTAATCAATGACG‑AA‑T‑CATTTTTG‑CTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTG > NZ_CP025268/1075250‑1075520 | tAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGAGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTgt > 2:4698757/1‑139 (MQ=255) ggTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGc < 2:5833598/140‑1 (MQ=255) tGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTc > 1:9361673/1‑140 (MQ=255) ggACAGCGCAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGGGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCg > 1:7971408/1‑140 (MQ=255) ggACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCg > 1:6883312/1‑140 (MQ=255) cacagcGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCaaaa > 1:8665621/1‑140 (MQ=255) cGGGGGTAATTTCAAGAATGACCCGCCGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCa > 1:5547663/1‑140 (MQ=255) cGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGACGCAGGTCAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTGTGTCTGTAGCTCGTCTAAAAGCCa > 1:7701013/1‑140 (MQ=255) cGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCa > 2:1676821/1‑140 (MQ=255) gggTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCAt < 2:7260708/138‑1 (MQ=255) ggTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCAc < 2:10740197/140‑1 (MQ=255) ggTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCAc < 2:2141001/140‑1 (MQ=255) gcaaTTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCAcc < 1:6308967/138‑1 (MQ=255) gTAATTTCAAGAATGACCCGCCGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCAcc > 1:5730893/1‑140 (MQ=255) gTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCAcc > 1:11307351/1‑140 (MQ=255) gTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCAcc < 1:9784700/140‑1 (MQ=255) gTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCAcc > 1:1253815/1‑140 (MQ=255) aTTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCAccgcc > 2:143570/1‑140 (MQ=255) aTTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCAccgcc > 1:1594352/1‑140 (MQ=255) tccaGAAGGACCCGAAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCATTCACGTCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGt < 2:10541735/137‑1 (MQ=255) cAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGtt < 2:2968978/140‑1 (MQ=255) aGAATGACCCGCCGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTAc > 1:3301201/1‑140 (MQ=255) aGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTAc > 1:1116156/1‑140 (MQ=255) gactGACCCGCAGCGCGCATCTGAATCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACACCTAGCCGGGCTAATCAATGACG‑AC‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTAcc < 1:9027704/137‑1 (MQ=255) aTGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTCGCCGGGCTAATCAATGACGCAG‑G‑CATTTTTGTCTGTAGCTCGTCAAACAGCCATCACCGCCGGTTACCCg < 2:3596103/140‑1 (MQ=255) aTGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCg < 1:9897466/140‑1 (MQ=255) aTGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCg < 2:2821422/140‑1 (MQ=255) aTGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCg < 1:5919599/140‑1 (MQ=255) aTGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCg < 2:92339/140‑1 (MQ=255) aCCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCggtg > 2:101389/1‑140 (MQ=255) aCCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCggtg > 2:8838697/1‑140 (MQ=255) aCCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCggtg > 2:9897229/1‑140 (MQ=255) aCCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCggtg > 1:1464970/1‑140 (MQ=255) cAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGa > 2:8989079/1‑140 (MQ=255) cgcATCTGAAGCAGGTAATAAAGGTGGTCAGAGCAGTCACGGCAAACCCGACAACTAGCCGGGCAAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGGCAAACAGCCATCACCGCCGGTTACCCGGGGGTTGAGACtg > 2:6337699/1‑140 (MQ=255) cgcATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACtg > 2:3870296/1‑140 (MQ=255) cgcATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACtg > 2:1200286/1‑140 (MQ=255) cATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCACAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTGTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACtgat > 1:350162/1‑140 (MQ=255) cATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACtgat < 2:4906996/140‑1 (MQ=255) aTCTGACGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGTCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAATCCATCACCGCCGGTTACCCGGTGGTTGATACtgatg < 1:8405713/140‑1 (MQ=255) cTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGAc < 1:11414712/140‑1 (MQ=255) cTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGAc < 2:8237283/140‑1 (MQ=255) aaGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACaaa < 1:2765098/140‑1 (MQ=255) aGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAAt < 1:715693/140‑1 (MQ=255) aGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAAt < 1:3979353/140‑1 (MQ=255) aGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAAt < 1:10817804/140‑1 (MQ=255) ggTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTTGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTaa > 2:4442754/1‑140 (MQ=255) ggTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTaa > 2:7703142/1‑140 (MQ=255) ggTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTaa > 2:3420993/1‑140 (MQ=255) ggTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTaa > 2:5622157/1‑140 (MQ=255) ggTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGGCATCAAGCCATCACCGCCGGTTACCCGGTGGGGGATACTGATGGCGAGTGTaa > 1:10281409/1‑140 (MQ=255) gTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAg < 2:9695642/140‑1 (MQ=255) aGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCt > 1:482792/1‑140 (MQ=255) tggtAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGTTGACACATGTAAGCGTGCCTGag > 2:7538438/1‑139 (MQ=255) tggtAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGAt > 1:7096968/1‑140 (MQ=255) tAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTTCCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATgcg < 1:6070698/140‑1 (MQ=255) tAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATgcg < 2:1037013/140‑1 (MQ=255) tAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATgcg < 2:4204850/140‑1 (MQ=255) tAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATgcg < 2:6508287/140‑1 (MQ=255) tAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATgcg < 2:8521490/140‑1 (MQ=255) tAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATgcg < 1:7415239/140‑1 (MQ=255) agagCAGTCACGGCAAAAGCGACAACTCGCCGGGCTAATCAATGACG‑AAGG‑CATTTTTGTCTGTAGCTCGACAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGcgcg < 1:9271862/140‑1 (MQ=255) agCAGTCACGGCAAAAGCGACAACGAGCCGGGCTCATCAATGACG‑AA‑TGCATTTGTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGCTGACAAAGGTAAGCTTGCCTGATGCGCGAt < 2:255188/140‑1 (MQ=255) gCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATg < 1:5051766/140‑1 (MQ=255) gCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATg < 1:1336475/140‑1 (MQ=255) aGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCt > 1:8078030/1‑140 (MQ=255) aCGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATc < 1:2540027/140‑1 (MQ=255) aCGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATc < 1:2883633/140‑1 (MQ=255) gCAAAAGCGACAACTAGCCGGGCTATTCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAATGCCATCACCGCCGGTTAGCCGGTGGTTGAGACTGCTGAGAAATGGTAGCTTGCCTGATGCGCGATGCTTCTCAgg > 2:11299859/1‑140 (MQ=255) gCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAgg > 1:9518761/1‑140 (MQ=255) cAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGc < 1:9588509/140‑1 (MQ=255) aaaaGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGcc < 1:7567548/140‑1 (MQ=255) aGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTAc > 2:9501375/1‑140 (MQ=255) gACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCag < 2:6767077/140‑1 (MQ=255) gACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCag < 2:6029246/140‑1 (MQ=255) aCAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCaga > 2:7775233/1‑140 (MQ=255) aCAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCaga > 2:4061730/1‑140 (MQ=255) ccGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCa < 1:5448600/140‑1 (MQ=255) ccGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCa > 2:11084690/1‑140 (MQ=255) ccGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCa < 1:10953711/140‑1 (MQ=255) cGGGCTAATCTATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCaa < 1:8527184/140‑1 (MQ=255) ggCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAata > 1:2316129/1‑140 (MQ=255) tAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAatatat < 1:4771632/140‑1 (MQ=255) tAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAatatat < 2:3535283/140‑1 (MQ=255) aaTCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATAtt > 2:3194265/1‑140 (MQ=255) aaTGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAAt < 1:6655649/140‑1 (MQ=255) tGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAAttt > 2:5523344/1‑140 (MQ=255) gACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTg < 1:10100832/140‑1 (MQ=255) gACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTg < 1:4226683/140‑1 (MQ=255) gACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTg > 1:10671211/1‑140 (MQ=255) gACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTg < 1:3742361/140‑1 (MQ=255) cgaatgcATTTTTGTCTGTAGCTCGTCAAACAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCa < 2:184751/134‑1 (MQ=38) cgaatgcATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCa < 1:4638459/134‑1 (MQ=255) cgaatgcATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCa > 2:8487921/7‑140 (MQ=255) cgaatgcATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCa < 1:6488716/134‑1 (MQ=255) cgaatgcATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCa < 2:5147856/134‑1 (MQ=255) gaatgcATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCAc < 1:10469792/135‑1 (MQ=255) actgcATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACt < 1:4463801/136‑1 (MQ=255) aatgcATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACt < 1:2134497/136‑1 (MQ=255) aatgcATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACt < 1:10146416/136‑1 (MQ=255) | TAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAACCGGGCTAATCAATGACG‑AA‑T‑CATTTTTG‑CTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTG > NZ_CP025268/1075250‑1075520 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |