| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 3,509,139 | +C | pseudogene (137/878 nt) | php ← | phosphotriesterase‑related protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 3,509,136 | 1 | . | C | 97.0% | 2844.4 / 69.2 | 840 | pseudogene (140/878 nt) | php | phosphotriesterase‑related protein |
| Reads supporting (aligned to +/- strand): ref base . (14/11); new base C (414/399); total (429/411) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.87e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 924 total aligned reads displayed.
CACATGTTCCGGGAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑G‑C‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTCGGATCAAAA > NZ_CP025268/3508998‑3509270 | ctGTTCCGGGAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGAGCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑G‑c‑c‑cc < 2:10986191/139‑2 (MQ=255) aTGTTCCGGGAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑G‑c‑c‑cc < 1:4406075/140‑2 (MQ=255) gTTCCGGGAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑G‑C‑C‑Ccgg > 1:3964529/1‑140 (MQ=255) ttCCGGGAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑G‑C‑C‑Ccggg > 1:885648/1‑139 (MQ=255) cGGGAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGtca > 1:9589385/1‑140 (MQ=255) gggAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGtcat > 1:10019976/1‑140 (MQ=255) ggAAAATCGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGtcatc > 2:3184465/1‑140 (MQ=255) gAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGtcatca < 2:6039618/140‑1 (MQ=255) aaaaCGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATTACATTACGCAC‑GCC‑C‑CGGGTCATCAgg < 1:2538599/140‑1 (MQ=255) cgTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTc < 2:1954429/140‑1 (MQ=255) cgTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTc < 2:6417668/140‑1 (MQ=255) cTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCAtct < 2:9037130/140‑1 (MQ=255) ggTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTcc < 2:7093377/140‑1 (MQ=255) ccagctACTGGCCACCTCGATGCTCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCaaa < 1:5012093/135‑1 (MQ=255) aCCGGTACAGGCCACCTCGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTTCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCaaa < 2:771803/140‑1 (MQ=255) aCCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGTTCTTTCATCTCCTGGCaaa < 1:16979/140‑1 (MQ=255) aCCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCaaa > 1:6770832/1‑140 (MQ=255) aCCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCaaa < 2:2743808/140‑1 (MQ=255) aCCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCaaa > 1:2898762/1‑140 (MQ=255) aCCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCaaa < 1:6320287/140‑1 (MQ=255) aCCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAAATGCGCATTGCGCCCAATGTAAGGGTTGGTCATCTCAATCACAGAACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCaaa > 2:4337617/1‑140 (MQ=255) cGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTATCGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATg < 2:10623385/140‑1 (MQ=255) ggTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGa < 1:1234264/140‑1 (MQ=255) gTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGaa > 1:7280093/1‑140 (MQ=255) gTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGaa > 2:3962174/1‑140 (MQ=255) gTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGaa > 1:2104325/1‑140 (MQ=255) tACAGGCCACCACGTTGATCCCCGTCTCGCGCAGTACCTCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAAc < 2:1765220/140‑1 (MQ=255) gCCACCACGTTGATCCCCGTCTCGCGTATTACATCAATCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCANTCACATTACGCACTC‑C‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATNAACGCATa < 1:6066943/140‑1 (MQ=255) gCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATa < 2:8253248/140‑1 (MQ=255) gCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATa > 2:9852779/1‑140 (MQ=255) gCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCAGTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATa < 2:1150847/140‑1 (MQ=255) caccacGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTCACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACt > 2:1392723/1‑140 (MQ=255) caccacGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACt > 2:10751237/1‑140 (MQ=255) cacGTTGATCCCCGTCTCGCGCATTACATCAAGCATAATTTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGAt > 1:10996985/1‑140 (MQ=255) cacGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGAt > 1:3726861/1‑140 (MQ=255) cacGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGAt > 1:4664984/1‑140 (MQ=255) gTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCaa < 2:346386/140‑1 (MQ=255) aTCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑G‑c‑c‑ccg < 1:9238915/89‑3 (MQ=255) tCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAggcgg < 1:3493535/140‑1 (MQ=255) ccccGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAggcggc > 2:672157/1‑140 (MQ=255) ccccGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCAGCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCCAATGAACGCATACTGATCAAggcggc > 1:9418185/1‑140 (MQ=255) gTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTc > 2:5603574/1‑140 (MQ=255) tctcGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTcc > 2:2669961/1‑140 (MQ=255) cgcgCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACg < 1:2278919/140‑1 (MQ=255) cgcATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCTATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACTCATAATGATCAAGGCGTCAGTCAACgtt > 2:8594417/1‑140 (MQ=255) cgcATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACgtt > 1:7094840/1‑140 (MQ=255) cgcATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACgtt > 1:8135224/1‑140 (MQ=255) aTTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACgttgtt < 2:2913257/140‑1 (MQ=255) tACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGGTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGACGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGtttt > 2:3636311/1‑140 (MQ=255) cAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAg < 1:7754386/140‑1 (MQ=255) gCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCCTCAGGTCGTTCATCTCGTGGCATATGAACGCTTACTGAGCAAGGCGGCAGTCCACGTTGTTTTTTAAGCCg > 2:8026438/1‑140 (MQ=255) gCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCg > 1:10814946/1‑140 (MQ=255) aTAAATTGCGCATTGAGCTCCATGTAACGGTTGGTGATCTATATCACATTTAGGAC‑G‑C‑CGAGGGTCATCAGGTAGTTCATCTACTGGCTAATGTACGCATACTGATCAATGCGTCAGTACACGTTGTTTTTAAAGCCggt < 2:10120360/140‑2 (MQ=255) aaaTTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGgaga < 2:879070/140‑1 (MQ=255) aaaTTGCGCATTGCGCCCCAGGGCACGGTTGGTCATCTCCATGACATAAAGCAC‑G‑CAC‑CGGGACAGCAGGTCGATCATCTCCGTGCACAGGAACGCTGACTGATCTACGAGTCAGTGCGCGGAGTTTTTAAAGCCTgagg > 2:8464152/1‑139 (MQ=255) aaTTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGgagag < 2:5389517/140‑1 (MQ=255) attgcgcattgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGgagaga < 1:8294519/140‑1 (MQ=255) ttgcgcattgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGAt < 1:1847481/140‑1 (MQ=255) ttgcgcattgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGAt < 1:2411557/140‑1 (MQ=255) ttgcgcattgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGAt < 1:476882/140‑1 (MQ=255) ttgcgcattgcgcCCCATGTAACGGTTGGTAATCTCAATCACATTACTCAC‑GCC‑C‑CGGGTCATCAGGTCGGTCATCTACTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGAt < 2:6291420/140‑1 (MQ=255) gcgcattgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCa < 2:2169682/140‑1 (MQ=255) gcgcattgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCa < 2:4611480/140‑1 (MQ=255) cgcattgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCCTCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCaa > 2:4793/1‑140 (MQ=255) cgcattgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAg > 2:2288743/1‑127 (MQ=255) cgcattgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGga < 2:2446656/132‑1 (MQ=255) cgcattgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCaa > 1:5842031/1‑140 (MQ=255) cgcattgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAAAGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGAACaa > 1:10120361/1‑140 (MQ=255) ttgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATg < 1:330573/140‑1 (MQ=255) tgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGc > 2:5203270/1‑140 (MQ=255) gcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGa < 2:5079490/140‑1 (MQ=255) ccccATGTAACGGTTGGTCATCACAAGCACAGTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGAt < 1:11205811/140‑1 (MQ=255) cccATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATg < 1:5435652/140‑1 (MQ=255) cATGTAACGGTTGGTCATCTCCATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGTGATCAATATGCAGATGCt > 2:11216430/1‑140 (MQ=255) aTGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCAAGTTGTTTTTAAAGCCGTATAGATCAATATGCAGATGCTc > 1:8663368/1‑140 (MQ=255) tGTAACGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCa > 1:10581413/1‑140 (MQ=255) cGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTCAAGCCGGAGAGATCAATATGCAGATGCTCATGGGc > 2:9299761/1‑140 (MQ=255) cGGTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGc < 1:5321048/140‑1 (MQ=255) ggTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCg > 1:10233485/1‑140 (MQ=255) ggTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCg < 1:10452741/140‑1 (MQ=255) ggTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCg < 1:7480450/140‑1 (MQ=255) gTTGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGa < 1:3178176/140‑1 (MQ=255) ttGGTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAg > 2:9762825/1‑140 (MQ=255) ggTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCACTATGCAGATGCTCATGGGCGAggg > 1:8387935/1‑140 (MQ=255) ggTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAggg > 1:9852828/1‑140 (MQ=255) ggTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAggg > 1:1407041/1‑140 (MQ=255) ggTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAggg > 2:7331721/1‑140 (MQ=255) gTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCGAGGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGgt > 2:3281430/1‑140 (MQ=255) gTCATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGgt > 1:5611076/1‑140 (MQ=255) cATCTCAATCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGgtgt < 2:9542441/140‑1 (MQ=255) aTCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATTGGCGAGGGTGTAACCCGt < 1:2717166/140‑1 (MQ=255) tCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTc > 2:5854614/1‑140 (MQ=255) tCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTc > 2:371464/1‑140 (MQ=255) tCACATTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTc > 2:10320856/1‑140 (MQ=255) aTTACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTCGGAt < 2:30756/140‑1 (MQ=255) tACGCAC‑GCC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGGCGGATCa > 1:6594842/1‑140 (MQ=255) acgcac‑gcC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTCGGATCaa < 2:11377392/140‑1 (MQ=255) acgcac‑gcC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTCGGATCaa < 1:8042321/140‑1 (MQ=255) acgcac‑gcC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTCGGATCaa < 1:4218242/140‑1 (MQ=255) cgcac‑gcC‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTATAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTCGGATCaaa > 2:4982992/1‑140 (MQ=255) | CACATGTTCCGGGAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCAC‑G‑C‑C‑CGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTCGGATCAAAA > NZ_CP025268/3508998‑3509270 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |