| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 3,864,439 | +C | pseudogene (1083/1613 nt) | CXP41_RS20140 ← | PTS sugar transporter subunit IIB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 3,864,437 | 1 | . | C | 98.4% | 2178.6 / 21.8 | 633 | pseudogene (1085/1613 nt) | CXP41_RS20140 | PTS sugar transporter subunit IIB |
| Reads supporting (aligned to +/- strand): ref base . (4/6); new base C (300/322); total (305/328) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.54e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 | |||||||||||
Only 100 of 674 total aligned reads displayed.
GCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑C‑C‑ATGTT‑‑‑CACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATG > NZ_CP025268/3864298‑3864568 | gCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACCACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCg > 1:1578492/1‑140 (MQ=255)gCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCg > 1:124677/1‑140 (MQ=255) cAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑c > 1:9347373/1‑140 (MQ=255) cAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑c > 2:331620/1‑140 (MQ=255) aGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGAGTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGAGCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑c‑c > 2:5931678/1‑140 (MQ=255) aaTCAGTGTGCGGAAAACCACGAAGGACAGCAGGGTAAAGCACAACCCAAGGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑c‑cca < 2:11120076/140‑3 (MQ=255) aGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGtt < 1:4898347/140‑1 (MQ=255) gtgtGCGGAAAACCACGAAGTACAGCAGGGTACAGCACAACCCCCTGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTg < 1:7272814‑M1/140‑2 (MQ=255) gtgtGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTg > 2:7834430‑M1/1‑139 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCACTGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcc < 2:4034309‑M1/140‑4 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGTTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcc > 2:5485985‑M1/1‑137 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcc > 2:2323176‑M1/1‑137 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcc > 2:4260707‑M1/1‑137 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcc < 1:1997633‑M1/140‑4 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcc < 1:2286397‑M1/140‑4 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcc > 2:7695620‑M1/1‑137 (MQ=255) ttcggAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAAAGGCGAATTTGGTCAGCATCATATCCGCGTGGTTGCTTAACATCGGGATCCAGTTTTGCGGTAAAACCAAGTAAAACAGACCTACGCC‑C‑ATGTTgccc > 1:10408239‑M1/3‑136 (MQ=255) gCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgccca < 1:10553527‑M1/140‑6 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccac < 1:2146244‑M1/140‑7 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccac < 1:3293779‑M1/140‑7 (MQ=255) ggAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccacc < 1:10001722‑M1/140‑8 (MQ=255) aaCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacac < 1:8884732‑M1/140‑12 (MQ=255) ccACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacacca < 2:2988979‑M1/140‑14 (MQ=255) ccACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACATCCGCC‑C‑ATGTTgcccaccacacca < 2:565505‑M1/140‑14 (MQ=255) cGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaag < 1:3988458‑M1/140‑17 (MQ=255) cGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaag > 2:3478272‑M1/1‑124 (MQ=255) aaGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagag < 1:9192256‑M1/140‑19 (MQ=255) aGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagaga < 2:10408746‑M1/140‑20 (MQ=255) aGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCAGATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGGTgcccaccacaccaaagaga < 2:11448482‑M1/140‑20 (MQ=255) tACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagata > 2:7449189‑M1/1‑119 (MQ=255) cagcagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagataca < 2:6834216‑M1/140‑24 (MQ=255) gcagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacatt < 2:6495780‑M1/140‑26 (MQ=255) gcagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacatt < 2:2479964‑M1/140‑26 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacgg > 1:8756602‑M1/1‑111 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacgg > 1:10689994‑M1/1‑111 (MQ=255) gTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggt < 2:1052503‑M1/140‑31 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacacccaagagatacattacggtc > 2:6372171‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtc > 2:1382854‑M1/1‑109 (MQ=255) caACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattg > 2:2192521‑M1/1‑102 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattga > 1:11232818‑M1/1‑101 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACAGCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattga > 2:3765802‑M1/1‑101 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCACTCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagagacattacggtcgacattgagg > 2:5836193‑M1/1‑99 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgagg > 1:2708543‑M1/1‑99 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgagg > 1:8111070‑M1/1‑99 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacataacggtcgacattgagg > 2:478974‑M1/1‑99 (MQ=255) ccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggc < 1:750966‑M1/140‑43 (MQ=255) ccAATGGCGAGTTGGGTCAGCATCATATCCGCGGGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCACTCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggc < 2:9393685‑M1/140‑43 (MQ=255) aaTGGCGATTTGTGTCAGCATCATATCCGCGTGGTTGCTGAAGATCGGGATCCAGTTTTGCGGTACAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTGCCCACCACACCAAAGATATACATTACGGTCGACATTGAGgccg < 2:7963493/140‑1 (MQ=255) aaTGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccg < 2:1802473‑M1/140‑45 (MQ=255) aaTGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccg < 1:8470426‑M1/140‑45 (MQ=255) aTGGCGATTTGGGTCAGCATCATATCCGCGTGGGTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgc < 2:8041774‑M1/140‑46 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgcc > 2:6229627‑M1/1‑94 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgcc > 1:5072489‑M1/1‑94 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:5573349‑M1/140‑50 (MQ=255) gATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagca < 1:10997922‑M1/140‑51 (MQ=255) gATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagca < 2:4975253‑M1/140‑51 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 1:2399426‑M1/1‑89 (MQ=255) tttGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacg > 2:4568971‑M1/1‑88 (MQ=255) tttGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacg < 2:8265198‑M1/140‑53 (MQ=255) ggTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgt < 2:9041004‑M1/140‑57 (MQ=255) tCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgt > 1:68321‑M1/1‑82 (MQ=255) cAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtc > 2:2016161‑M1/1‑81 (MQ=255) cAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgta > 1:2974764‑M1/1‑81 (MQ=255) tcatATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgca < 1:4418946‑M1/140‑65 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 2:10110097‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 1:6122000‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 1:10917803‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacacca < 2:5264324‑M1/81‑14 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑CTGTTgcccaccacacccaagagatacattacggtcgacatggaggccgccagcacggcgtgtaccgccaacagcaac > 2:3072733‑M1/1‑67 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccccaccaaagagagacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaac > 2:152403‑M1/1‑67 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgtggccgccagcacggcgtgtaccgcaaacagcaac > 1:5852654‑M1/1‑67 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtcccgcaaacagcaac > 2:8725382‑M1/1‑67 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaac > 2:851710‑M1/1‑67 (MQ=255) gTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacg < 2:10739279‑M1/140‑75 (MQ=255) tGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaa < 1:1817721‑M1/140‑80 (MQ=255) tGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑AGGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaa < 1:7782069‑M1/140‑80 (MQ=255) gCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaa > 2:7275793‑M1/1‑60 (MQ=255) tGAACATCGGGATCCAGTTTTGCGGTAATACCTAGTCAATCAGACCTCCG‑C‑CGATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatg < 2:9565917‑M1/140‑83 (MQ=255) aCATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaac < 1:6267040‑M1/140‑86 (MQ=255) cATCGGGATCCAGTTTTGCTGTAAAACCTAGTCAATCAGACCTCCG‑CAC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaactgcaacggtgaaatgaaca > 2:3612153‑M1/1‑54 (MQ=255) tCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg > 2:10218424‑M1/1‑52 (MQ=255) tCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg > 2:6120490‑M1/1‑52 (MQ=255) tCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg > 1:4707634‑M1/1‑52 (MQ=255) tCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacgggcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgacatgaccagg > 1:11408754‑M1/1‑52 (MQ=255) ttttGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattc > 1:3805464‑M1/1‑41 (MQ=255) tGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccag < 1:1444945‑M1/140‑103 (MQ=255) tGCGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccag < 1:6653794‑M1/140‑103 (MQ=255) cGGTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgagatgaacaggaaggtaaattccagcg > 1:3630185‑M1/1‑36 (MQ=255) ggTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 1:941634‑M1/140‑106 (MQ=255) ggTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 1:5321674‑M1/140‑106 (MQ=255) ggTAAAACCTAGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 1:9633931‑M1/140‑106 (MQ=255) aGTCAATCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaatt < 2:896397‑M1/140‑116 (MQ=255) aaTCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattccca > 1:4246692‑M1/1‑21 (MQ=255) tCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagtgatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccacc > 1:9904647‑M1/1‑19 (MQ=255) tCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggcagggaaattccagcggttcgggaagtccgacc > 1:10200318‑M1/1‑19 (MQ=255) tCAGACCTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaagtccagcgggtcggtaattcccacc > 1:7076800‑M1/1‑19 (MQ=255) cTCCGCC‑C‑ATGTTgccccccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcatg < 1:7960425‑M1/140‑128 (MQ=255) cTCCGCC‑C‑ATGTTgcccaccacacccaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgacatgaacaggaaggtaaattccagcggttcggtaattcccacccgcatg > 2:283595‑M1/1‑13 (MQ=255) cTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattccggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggacggtaaagtccagcggttcggtaattcccaccagcatg < 1:3185056‑M1/140‑128 (MQ=255) cTCCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcatg < 2:7071102‑M1/140‑128 (MQ=255) | GCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑C‑C‑ATGTT‑‑‑CACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATG > NZ_CP025268/3864298‑3864568 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |