BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,292,982	0	A	G	50.2%	38.7 / inf	336	noncoding (55/132 nt)	CXP41_RS06835	RtT sRNA
Reads supporting (aligned to +/- strand): ref base A (52/106); new base G (89/70); total (154/182)
Fisher's exact test for biased strand distribution p-value = 4.48e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 342 total aligned reads displayed.

CGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGC  >  NZ_CP025268/1292845‑1293115

 gcttGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGGGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGgcgc                                                                                                                                    >  1:8584088/4‑140 (MQ=255)

 gcttGGGCAGAATATTTGATTGAGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGAGGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGc                                                                                                                                    >  2:6134143/4‑140 (MQ=255)

  cttGGGCAGAATATATGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCt                                                                                                                                   <  1:5328243/138‑1 (MQ=255)

  cATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTGGGTGgcgcg                                                                                                                                   >  2:6410551/1‑139 (MQ=11)

   ttGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTc                                                                                                                                  <  1:3234101/139‑1 (MQ=255)

      ggCAGAATCTTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGCTGGTGGGGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAg                                                                                                                               >  2:6483135/1‑140 (MQ=11)

      ggCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTAATCTGCGCTGCGCGCATCGCCCTTCGGGTCGGTGCCTGAGGCCACGGTCTCTCGCGGTCGCTCGaa                                                                                                                               >  1:2437795/1‑139 (MQ=14)

      ggCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCCGCTCTGCGCGCTTCGCCATTCCTGTCGTGGCCAGCCGCAACTATATCTCGCTGGCGCTCTAg                                                                                                                               >  2:9573118/1‑140 (MQ=11)

       gCAGACTATTTGATTGCGTATTCGTGTGAGTATGCCGGGGCTTTTGATAGTGAGGGTGGGGGGGGAAGGATTACTCCGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGc                                                                                                                              <  2:9627593/140‑1 (MQ=14)

       gCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGACAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGc                                                                                                                              <  2:8712731/140‑1 (MQ=255)

       gCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAgt                                                                                                                              >  2:7222296/1‑139 (MQ=255)

         aGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCg                                                                                                                            <  2:4343543/140‑1 (MQ=255)

         aGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTTCTCAGCGCGGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAAAGCTCTCTCGCTGGCGCTCGAGTCg                                                                                                                            <  1:1554362/140‑1 (MQ=11)

           aaTATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGaa                                                                                                                          >  2:5047806/1‑140 (MQ=11)

             tatTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGTCGAAcc                                                                                                                        >  2:3321967/1‑140 (MQ=255)

             tatTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAAcc                                                                                                                        <  1:1616984/140‑1 (MQ=255)

             tatTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAAcc                                                                                                                        >  1:11318439/1‑140 (MQ=11)

                atGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGAGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCCCTGGCTCTCGAGTCGAACCttg                                                                                                                     >  2:6754125/2‑139 (MQ=11)

                     tGCGGATTCGTTTGAGATTTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                                <  1:3254103/140‑1 (MQ=255)

                     tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGATCCGAACCTTAGTCGa                                                                                                                <  2:3945873/140‑1 (MQ=255)

                     tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                                <  1:1407619/140‑1 (MQ=255)

                      gCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGaa                                                                                                               <  1:10836395/140‑1 (MQ=255)

                       cGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTTCCAGCGGCAAAGCAATCTCGCTGGCGCTCGAGACGAACCTTAGTCGAAg                                                                                                              >  1:3914213/1‑140 (MQ=14)

                       cGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAg                                                                                                              >  2:1751097/1‑140 (MQ=255)

                       cGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCGGCGGCAAAGCTCTCTCGCTGACCCGCGAGGCGAACCATAGTCGAAg                                                                                                              >  1:1725003/1‑140 (MQ=14)

                         gATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCCGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCt                                                                                                            <  2:4762370/140‑1 (MQ=255)

                           ttCGTTTGAGAATTCCGGGGATTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTtc                                                                                                          <  2:10565204/140‑1 (MQ=255)

                             cgtttGAGCATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTtctc                                                                                                        <  1:2749882/137‑1 (MQ=255)

                             cgtttGAGAATTCCGGGGCGTTTGACAGAGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTtctc                                                                                                        <  1:8979697/137‑1 (MQ=14)

                               tttGAGCATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCAt                                                                                                      <  2:8882773/139‑1 (MQ=255)

                               tttGAGAATTCCGGGGCTTTTGTAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCAt                                                                                                      <  1:7373625/139‑1 (MQ=255)

                                 tGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGGTCTCTCGCGGAAGCTCGATGCGAACATTAGTCGAAGCTTCTCAtac                                                                                                    >  1:1792791/1‑138 (MQ=14)

                                   agaATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGACGAACCTTAGTCGAAGCTTCTCATCCtt                                                                                                  >  2:1829129/1‑140 (MQ=255)

                                    gaATTCCGGGTCTTTTGAAAGGGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTc                                                                                                 <  2:2547801/140‑1 (MQ=255)

                                    gaATTCCGGGGCTTTTGACAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTc                                                                                                 <  1:6740964/140‑1 (MQ=255)

                                      tttCGGGGTCTTTTGTAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTccc                                                                                               <  2:3570962/139‑1 (MQ=255)

                                        tCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCGGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCg                                                                                             <  1:8131192/140‑1 (MQ=255)

                                         ccGGTGCTTTTTAAAGTGATGGTTGTGGTGGAATGATTCCTCTTATTTGCCGGCTTCGACATTCGTGTATTTGACTGAGGCAACGCTCTCTAGCTGACGCTCTAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGc                                                                                            <  2:5727109/140‑1 (MQ=2)

                                          gtttttttttGTATGTGATGGTGGTGGGGGATTGATTACTCAGCGCTGCGAGATTCGCCCTTGGGGTCGTTGAATGCGGAAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCa                                                                                           <  2:8251027/134‑1 (MQ=11)

                                           ggggCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCAt                                                                                          <  2:7352491/140‑1 (MQ=21)

                                            gggCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCgatgt                                                                                         >  2:695166/1‑136 (MQ=19)

                                              gCTTTGGAAAGTGATGTTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                       <  2:2713074/140‑1 (MQ=16)

                                                ttttGATTGTGAGGGTGGGGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                     <  1:2087068/140‑1 (MQ=11)

                                                atttGTAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                     <  2:5273419/139‑1 (MQ=12)

                                                  ttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATTCGCAGa                                                                                   >  2:2781882/1‑140 (MQ=12)

                                                       aGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAatatc                                                                              <  1:5096469/140‑2 (MQ=17)

                                                         cgATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCg                                                                                                                            <  2:5885455/91‑1 (MQ=17)

                                                                         aGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCATGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAAATTTAAATGCGGATTCGTTgg                                                            >  2:4674248/1‑140 (MQ=11)

                                                                           gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTAATTGCGGATTCGTTGGGa                                                          <  2:2260839/140‑1 (MQ=11)

                                                                           gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGa                                                          <  1:3808353/140‑1 (MQ=11)

                                                                            aTTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCAt                                                                                          <  2:10015937/107‑1 (MQ=17)

                                                                            aTTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCAt                                                                                          >  1:10015938/1‑107 (MQ=17)

                                                                            aTTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTATCAAGCTGGCGCGCGAGTCGAACCGTGGTCGAATCATCTCATACTTCCCCCCATGGGCACAATAATTAATTGGGGATTAGTTGGGaa                                                         >  1:6149493/1‑140 (MQ=11)

                                                                              tACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCAGCCTTCCCCGCTGGGGGCGAAGATTTAATTGCGGATTCGGTGGGAAGt                                                       >  1:8407132/1‑140 (MQ=11)

                                                                              tACTCAGCGCGGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGGATATTGTATTGCGGAGTCGGTGGGGAGt                                                       >  2:11147210/1‑140 (MQ=11)

                                                                               aCTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGtt                                                      <  1:3024419/140‑1 (MQ=255)

                                                                                cTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGa                                                          <  1:9438027/135‑1 (MQ=255)

                                                                                cTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTc                                                     >  2:10497036/1‑140 (MQ=255)

                                                                                cTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTGGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCCGAATATTTAATTGCGGATTCGTTGGGACGtag                                                     >  2:6077945/1‑138 (MQ=11)

                                                                                cTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAATCGAAcc                                                                                                                        <  2:1974547/73‑1 (MQ=255)

                                                                                cTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAAACGAAcc                                                                                                                        >  1:1974548/1‑73 (MQ=255)

                                                                                  cAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCAACCTTCCCCGCATGGGCAGAATAGTTAAGTGGGGAGTCGTTGGGACGTTCAg                                                   >  2:6363506/1‑140 (MQ=11)

                                                                                   aGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCTAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAga                                                  <  1:4285437/140‑2 (MQ=14)

                                                                                    gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAggg                                                 <  2:11325662/140‑1 (MQ=255)

                                                                                     cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCCTGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGa                                                >  2:7061131/1‑140 (MQ=14)

                                                                                        tGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACtt                                             >  2:4329450/1‑140 (MQ=255)

                                                                                        tGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTACCCGCATGGGCAGAATAATTAATTTCGGATTCGGTGGGGAGTTCAGGGACtt                                             >  2:5450232/1‑140 (MQ=11)

                                                                                          cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGGCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACtttt                                           >  2:11018149/1‑140 (MQ=255)

                                                                                          cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGACGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTTATTGCGGATTCGGTGGGCAGTTCAGGGACtttt                                           >  2:9263364/1‑140 (MQ=11)

                                                                                          cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTAGAGTCGAACCTTGGTAGAAGCGTCTCAACCTTACCCGCCTGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACtttt                                           >  2:1622146/1‑140 (MQ=14)

                                                                                          cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTTGTCGAAGCTTCTCATCCGTCCCCGCATGGGCAGAATATTTTATTGCGGATTCGGGGGGGAGTTCAGGGACtttt                                           >  2:8559478/1‑140 (MQ=11)

                                                                                          cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                                <  1:4199228/71‑1 (MQ=21)

                                                                                          cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTAGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCATCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACtttg                                           >  2:1518037/1‑139 (MQ=14)

                                                                                          cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCACTCTCGCTGACGCTCGAGACGAACCTTAGTCGAAGCTTATAATACTTACCCGCATGGGCAGAATATTTTATTGCGGATTCGCTTGGAAGTTCAGGGACtttt                                           >  2:2362537/1‑140 (MQ=11)

                                                                                          cgcgcTTCGCCCTTCGGGGCGTTGCCTGCGGCAACGCTCGCTCGCTGGCGCGCGAGTCGAACCTGGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAACTTTAAATGCGGCGTCGGTGGGACGTTCCgggccgggt                                           >  2:1257752/1‑134 (MQ=2)

                                                                                            cgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGa                                         <  1:70228/140‑1 (MQ=255)

                                                                                             gcTTCGCCCTTCGGGTCGTTGCCTGCGTCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGaa                                        <  2:6667004/140‑1 (MQ=14)

                                                                                             gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGaa                                        <  2:10801834/140‑1 (MQ=255)

                                                                                             gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGaa                                        <  1:4698918/140‑1 (MQ=255)

                                                                                                  gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGA                                   <  1:1257174‑M1/140‑1 (MQ=255)

                                                                                                     cTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGG                                <  1:577649‑M1/140‑1 (MQ=255)

                                                                                                       tCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCGTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTGGGGAAGTTCAGGGACTTTTGAAAGTGATGGTG                              >  2:10269175‑M1/1‑140 (MQ=255)

                                                                                                       tCGGGTCGTGGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTTATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTG                              <  1:8352348‑M1/140‑1 (MQ=255)

                                                                                                          ggTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTG                           <  1:9020155‑M1/140‑1 (MQ=255)

                                                                                                             cGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                     >  2:8351395/1‑79 (MQ=21)

                                                                                                               ttGCCTGCGGCAACGCTATCTCGCTGGGGCTCGAGTCGAACGTTTGTCGTATCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGA                      <  1:10273987‑M1/140‑1 (MQ=255)

                                                                                                                     ggggcaACGCGCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCGTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATTGTGGTGGGGGAAGGATT                >  2:7707505‑M1/3‑140 (MQ=255)

                                                                                                                      cGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCGTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTc               >  1:11214930‑M1/1‑139 (MQ=255)

                                                                                                                       ggCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCGTCTCATCCTTCCCCGCTGGGGCAGAATATTTCATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcg              <  2:8521090‑M1/140‑3 (MQ=255)

                                                                                                                        gCAACGCTCTCTCGCTGTCGCTCGAGTCGAACCTTGGTCGAAGCTTATCATCCTTCCCCGCATGGGCAGAATAGTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcga             <  1:8523778‑M1/140‑4 (MQ=255)

                                                                                                                        gCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcga             <  1:9297818‑M1/140‑4 (MQ=255)

                                                                                                                        gCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcga             <  1:9573278‑M1/140‑4 (MQ=255)

                                                                                                                        gCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGATGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcga             <  1:4434530‑M1/140‑4 (MQ=255)

                                                                                                                         cAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaa            <  1:10497037‑M1/140‑5 (MQ=255)

                                                                                                                           aCGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCTTCCTTCCCCGCATGGTCAGAATATTTACTTGCGGATTCGTTGGGAAGTTCAGGGACTTGTGAAAGTGATGGTGGTGGGGGAAGGATTcgaacc          >  1:6497579‑M1/1‑134 (MQ=255)

                                                                                                                            cGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATAGTTAATTGCGGATTCGGTGGGCAGGTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaacct         >  1:7646771‑M1/1‑133 (MQ=255)

                                                                                                                            cGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTTATTGCGGATTCGTTGGGTAGTTCAGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgtacca         >  1:4377700‑M1/1‑133 (MQ=255)

                                                                                                                            cGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCGTCCCCGCCTGGGCCGAAGATTGGAGTGCGGATTCGCGTGCGCGTTGTGGGTCTGTGGAATGNGAGGGTGGGGGGGGACGGTGTACTCAgc         >  1:6021650/1‑140 (MQ=255)

                                                                                                                               tctctcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcg      <  1:7276579‑M1/140‑11 (MQ=255)

                                                                                                                                   tcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGTATATTTAATTGCGGATTCGTTGGGAAGGTCAGGGACTTTTGAATGTGATGGTGGTGGGGGAAGGAGTcgcaccttcgaagt  >  1:3359118‑M1/1‑126 (MQ=255)

CGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGC  >  NZ_CP025268/1292845‑1293115

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`