Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP025268 | 2,233,225 | 0 | T | A | 23.9% | 322.1 / 44.3 | 192 | intergenic (+125/+248) | yohP/dusC | small membrane protein YohP/tRNA dihydrouridine(16) synthase DusC |
Reads supporting (aligned to +/- strand): ref base T (53/90); new base A (45/0); total (101/91) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.87e-16 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
Only 100 of 192 total aligned reads displayed.
GATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTG > NZ_CP025268/2233088‑2233363 | gatgatATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATcg < 2:3515920/140‑1 (MQ=255) gatgatATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATcg < 2:1823603/140‑1 (MQ=255) gatgatATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAAAcg > 1:6754770/1‑140 (MQ=255) gatgatATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAAAcg > 2:5396364/1‑140 (MQ=255) gatgatATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCACGGGGGGG‑GCAAAcg > 1:8294411/1‑140 (MQ=255) tatTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑GCAATcgccgcc > 2:9164412/1‑140 (MQ=255) tatTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATcgccgcc < 2:11277388/140‑1 (MQ=255) atTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATcgccgccg < 1:110582/140‑1 (MQ=255) atTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATcgccgccg < 1:6887287/140‑1 (MQ=255) atTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATcgccgccg < 2:8260646/140‑1 (MQ=255) tttAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCgccgccgcc < 1:7722122/140‑1 (MQ=255) aatAAAATTAATTAATGTCATCAGGTCCGAAAACAACGAGAATATTTCAGTCTCTCAGCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCgccgccgcc < 1:52812/138‑1 (MQ=255) aattaattAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCGCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCACGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTg < 2:1217675/140‑1 (MQ=255) taattaatGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGGGG‑GCAAAATCCGccccccccaccac > 1:3690943/1‑135 (MQ=38) taattaatGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑GCCAAAGCCGCCCCCCCCCGCAc > 1:6513808/1‑140 (MQ=38) attaatGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAAAACCCCCCCCCCCCCGCAccc > 1:3325962/1‑140 (MQ=38) atcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAAACGCCCCCCCCCCCAGCAcccccccgcact > 1:1867702/1‑133 (MQ=37) tcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCAGCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGGCGGGGGGGGGCCCTAGCGCCCCCCCCCCCCCACCCCCCGGGcag > 1:256513/1‑138 (MQ=255) tcaGGGCCGAAACTAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATACTCCCTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTg < 1:10359392/140‑1 (MQ=255) gTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCGGGGGGGGG‑GCAAACGCCGCCGCCCCCAGCACCCCCCCGCGCTAGCGa > 1:8424696/1‑140 (MQ=25) gTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGa < 2:1975728/140‑1 (MQ=255) cGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCAGCACCCCCGGGCTCTGGCGAACa > 2:6146222/1‑140 (MQ=255) cGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCCCCGCCCCCAGCACCCCCCGGCACAGGCGAAcc > 2:599564/1‑139 (MQ=25) aaaaTAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCAGGCGAACaaa > 2:2893624/1‑140 (MQ=255) aaaaTAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAAACGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACaaa > 2:10163176/1‑140 (MQ=255) aaaaaCCAGAATATTACATCCTCACATCCTGTGGCGCTCCTGTCTTGTGCATTGCTTCATAAAAACACTGGCCCAAGTAGCGC‑GCCGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGACCAAAAt < 1:2159275/137‑1 (MQ=18) aaCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGGGGGGGCGG‑CCCAACGCCGCCCCCCCCAGCACCCCCCGGCGCAGGGGGACaaaaaagc > 1:3531578/1‑136 (MQ=25) aaCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCCAACGCCGCCGCCCCCAGCACCCCCCGGCTCTGGCGAACAAAATagc > 2:4238939/1‑140 (MQ=25) aCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCCATCGCCGCCGCCCCCAGCACCCCCCGGCTCTGGCGAACAAAATcgcc > 2:7044209/1‑140 (MQ=255) cGAGAATATTTCAGTCTCTCATCCTGGTGCGCTCCTGTCATGTGCATTGCTTCATATACTCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATcgccg < 1:2950679/140‑1 (MQ=255) aggaATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCTGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATcgccgc < 2:1404699/138‑1 (MQ=255) tatTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTgcgc < 1:7643098/140‑1 (MQ=255) cAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCCAACGCCGCCGCCCCCAGCACCCCCCGGCACTGGCGAACAAAAACGCCGCTGCGCGGTGc > 2:676311/1‑140 (MQ=18) aGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATAGCCGCAGCGCGGTGcc > 2:6614188/1‑140 (MQ=255) aGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAAAACCCCCCGCCCCCACCACCCCCCGGCACATGCGAACAAAAAACCCGCTGCGCCGTGcc > 2:4621095/1‑140 (MQ=18) gTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGccc < 2:3723933/140‑1 (MQ=255) tctctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGGCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCt > 2:6813607/1‑140 (MQ=255) tctctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCt < 1:6681245/140‑1 (MQ=255) tctctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAAACGCCGCCGCCCCCAGCACCCCCCGGCTCTGGCGAACAAAAACGCCCCAGCGCCGTGccca > 2:10943261/1‑139 (MQ=18) tctctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAAACGCCGCCCCCCCCAGCACCCCCCGGCTCAGGCGAACAAAAAAGCCGCGGCGCGGTGccca > 2:750380/1‑139 (MQ=18) tctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCCAAAGCCCCCCCCCCCTGCACCCCCGCGCAAAGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCg > 2:10097993/1‑140 (MQ=18) tcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCCCCCCCTGCACCCCCCGGCTCTGGCGAACAAAATCTCCGCGGCGCGGGGCCCTCCGc > 2:7128777/1‑140 (MQ=18) aTCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCtt < 2:4855956/140‑1 (MQ=255) tCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTa < 2:614063/140‑1 (MQ=255) tCCTGTTGCGCTCCTGTCATGTGCAGTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTa < 1:9279389/140‑1 (MQ=255) ttGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGCGG‑CCCAAAGCCGCCGCCCCCCCCCCCCCCCGGGTAAGGGGCACAAAAACGCCGGGGCGCGGGGGCCCCGGCGTAAcccg > 2:2119975/1‑139 (MQ=16) ttGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGGGG‑GCCATCGCCCCCCCCCCCATCACCCCCCGGCACAGGCCCACAAAAAACCCGCAGCGCCGTGCCCACGGCATATacca > 2:1651930/1‑139 (MQ=16) ttGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCCCCGCCCCCCCCTACACCCCCGGGCTGCTGCGGACAAAAACCCCGCTTGGCGGTGCCCACGGCGTATacca > 2:5699795/1‑139 (MQ=18) gcgcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCCATCGCCGCCGCCCCCCGCACCCCCCGGCGCAGGCGAACAAAAACCCCGCGGCGCGGTGCCCCCGGCTTATCCCATa > 2:6486007/1‑140 (MQ=18) gcgcTCCTGTCATGTGCATTGCTTCATATAAGCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTa < 1:1447128/140‑1 (MQ=255) cgcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGTGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTAc < 1:4880550/140‑1 (MQ=255) cgcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTAc < 2:2026511/140‑1 (MQ=255) gcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACg > 2:10476600/1‑140 (MQ=255) gcTCCTGTCATGTGCATAGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑ACAAACTCCGCCCCCCCCACAACCCCCCGGCTCAGGCGAAAAAAATCGCCGCAGCGCGGAGCCCAAGGCGTAACACTTACg > 2:11016370/1‑140 (MQ=12) cTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAAACCCCCCCCCCCCCAGCCCCCCCCGGCACAGGCGAACAAAAAACCCGCGGCGCGGTGGCCCCGGCCGATCCCGTACgg > 2:5199475/1‑140 (MQ=16) cTCCTGTCATGTGCATTGCTTCATATAAGCACTGGCGCAAGGAGCGC‑GGGGGGGGCGG‑CCCAAACCCCCCCCCCCCCCCCCCCCCCCGCCCCGGGGGACAAAAACACCGCCGCGCGGGGCCCGCGGCGTATCCCCTActg > 1:8250928/1‑138 (MQ=12) ccTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCt < 2:3297268/140‑1 (MQ=255) gTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGCGCGC‑GCAGGGGGCCG‑CCCAACGCCCCCCCCCCCGGCACCCCCCGGCGCAGGCGACCAAAATAGCCCCGGCGCGGGGCCCCCCGCGTATCCCCTACCGCGAcc > 2:8820873/1‑140 (MQ=255) gTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCAGCCCCCCCCGGCGCAGGCGGACAAAATCGCCCCGGGGCGGGGCCCGCCGCGTTTACCGTAAGGCTAcc > 2:5531342/1‑140 (MQ=17) tCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCg < 1:9543393/140‑1 (MQ=255) cATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCCATCGCCGCCGCCCCCAGCACCCCCCGGCACTGGCGAACAAAATCGCCGCAGCGCGGTGCCCAAGGCTTATCCCATACGGCTACCGGGTCggg > 2:7684233/1‑140 (MQ=14) cATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCggg < 2:9294296/140‑1 (MQ=255) ttGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcg < 2:4501565/140‑1 (MQ=255) ttGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcg < 1:5396365/140‑1 (MQ=255) ttGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcg < 1:9969495/140‑1 (MQ=255) tGCTTCATATAATCCCTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcgc < 1:4256376/140‑1 (MQ=255) tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcgc < 1:10943262/140‑1 (MQ=255) tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcgc < 2:6172120/140‑1 (MQ=255) tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCACGGGGCGG‑CCCAACGCCCCCCCCCCCAGCACCCCCCGGCTATGGCGAACAAAAAAACCCCTGCGCGGTGCCCACCGCTAAAACCATAACGCTAACCGGTAGGgcgc > 2:9871813/1‑140 (MQ=9) cTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATAGCCCCCGCCCCCATCACCCCCGGGCTCTGGCGAAAAAAAAAGCCCCTGCGCGGTGCCCACCGCATATACCTTAAGGCTAACGGGTAGGGGGCGa > 2:3843828/1‑140 (MQ=14) cATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGCCTAACGGGTCGGGCGCGAGGt < 2:1066670/140‑1 (MQ=255) cATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAAACGCCGCCGCCCCCAGCACCCCCGGGCACTGGCGAACAAAATAGCCGCTGCGCGGTGCCCACGGCGTATCCCTTAAGGCTACCGGGTCGGGCGCGAGGt > 2:7612043/1‑140 (MQ=14) tataATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTaa < 2:4421682/140‑1 (MQ=37) caaTCACTGGCGCATGGAGCGC‑GCTGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGTGCTCTGGCGCACAAAATCGCCTCTGCGCGGTGCACTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGATGTAACa < 1:5822292/139‑1 (MQ=11) aaTCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACAt < 1:5797711/140‑1 (MQ=34) tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCCCCGCCCCCAGCACCCCCCGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATACCTTACGGCTAACGGGTCGGGCGCGAGGGAACATcc > 2:10461050/1‑140 (MQ=11) tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAAACGCCCCCGCCCCCAGCACCCCCCGGCTCAGGCGAACAAAATCGCCCCGGCGCGGTGCCCACGGCGTATCCCATACGGCAACCCGGTCGGGCGCGAGGTAAccacc > 2:866433/1‑136 (MQ=11) tCACTGGCGAATGGAGCGC‑GCAGGGGGCGG‑CAAATCGCGGCCGCCCCATGCACCCCCGGGCTCTGGAGAACAAAATCGCCGCTGCGCGGTGACCTCGGCTTATCCCTTCCGGCTTCCGTGTCGGGCGCGAGGTAACATcc < 1:9689329/140‑1 (MQ=11) cTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCCCCCCCAGCACCCCCGGGCTCTGGCGAACAAAAACGCCGCAGCGCGGTGCCCACGGCATATCCCATACGGCTACCGGGTCGGGCGCGAGGTAACaaaccag > 2:6690878/1‑134 (MQ=11) gcgcAAGGAGCGC‑GCAGGGGGTGG‑CCAATCGCCGCCGCCCCCAGCACCCCCGGGCTCTGGCGAACAAAAACGCCGCTGCGCGGTGCCCTCGGCTTATACCTTACGGCTACCCGGTCGGGCGCGAGGTAACAACCCTGTaa > 2:396482/1‑140 (MQ=11) aaGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAcg < 2:2685447/140‑1 (MQ=32) aGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAcgc < 2:11034744/140‑1 (MQ=32) cgc‑gcAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt < 2:11382906/140‑1 (MQ=32) cgc‑gcAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt < 2:5349016/140‑1 (MQ=32) cgc‑gcAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt < 1:11306564/140‑1 (MQ=32) cgc‑gcAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt < 2:2794913/140‑1 (MQ=32) c‑gcAGGGGGCGG‑CCCAACGCCGCCGCCCCCAGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCGGCGCGGTGCCCTCGGCGTATACCTTAAGGCTAACGGGTCGGGCGCGCGGTTACAAACCAGTAAAACGCGCCcaca > 2:9381386/1‑140 (MQ=11) cAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGc < 1:8012828/140‑1 (MQ=32) cAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGc < 2:7837531/140‑1 (MQ=32) tgggggCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGcc < 2:1768774/139‑1 (MQ=17) aGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGcc < 2:8424695/140‑1 (MQ=32) aGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGcc < 2:11431980/140‑1 (MQ=32) ggcgg‑cCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca < 2:8646878/140‑1 (MQ=32) ggcgg‑cCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca < 2:9997285/140‑1 (MQ=32) g‑cCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTaa > 1:1526041/1‑106 (MQ=32) g‑cCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCa > 2:6944797/1‑140 (MQ=32) g‑cCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATAGCCGCTGCGCGGTGCCCTCGGCGTAACCCTTGAGGCAACCCGGTCGGGCGCGAGGGAACATCCCTGGAAAAAGCGCCCGAAGCCCACAACCa > 1:6151018/1‑140 (MQ=11) aTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAtgtg > 2:3900188/1‑140 (MQ=32) aTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAtgtg > 2:132746/1‑140 (MQ=32) aTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGGACCATCCCTGTAAAACGCGCCCTCAGCCCACATCCAtgtg > 1:10049417/1‑140 (MQ=17) | GATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTG > NZ_CP025268/2233088‑2233363 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |