Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0252682,233,2390TA31.2% 287.2 / 61.4 187intergenic (+139/+234)yohP/dusCsmall membrane protein YohP/tRNA dihydrouridine(16) synthase DusC
Reads supporting (aligned to +/- strand):  ref base T (27/92);  new base A (53/1);  total (94/93)
Fisher's exact test for biased strand distribution p-value = 5.01e-23
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 189 total aligned reads displayed.

AATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTT  >  NZ_CP025268/2233101‑2233378
                                                                                                                                            |                                                                                                                                           
aattaattACTGACATCAGGTCCTAAAATAACGAGAATATTGCCGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATCTAATCCCTGGCGCAAGGAGCGC‑GCTGGGGGCGG‑CCAATCGCCGCCGCCCCCTg                                                                                                                                            <  1:5362002/140‑1 (MQ=37)
aattaattAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCGCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCACGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTg                                                                                                                                            <  2:1217675/140‑1 (MQ=255)
     attaatGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAAAACCCCCCCCCCCCCGCAccc                                                                                                                                       >  1:3325962/1‑140 (MQ=38)
              atcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑GCCAAAGCCGCCCCCCCCACCAcccccccccact                                                                                                                              >  1:5538902/1‑133 (MQ=37)
              atcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAAACGCCCCCCCCCCCAGCAcccccccgcact                                                                                                                              >  1:1867702/1‑133 (MQ=37)
              atcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAAAAGCCGCCCCCCCCAGCACCCCCCGGctca                                                                                                                              >  1:11382907/1‑139 (MQ=37)
               tcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCAGCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGGCGGGGGGGGGCCCTAGCGCCCCCCCCCCCCCACCCCCCGGGcag                                                                                                                               >  1:256513/1‑138 (MQ=255)
                   gTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGa                                                                                                                         <  2:1976950/140‑1 (MQ=255)
                   gTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGa                                                                                                                         <  2:1975728/140‑1 (MQ=255)
                      cGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCAGCACCCCCGGGCTCTGGCGAACa                                                                                                                      >  2:6146222/1‑140 (MQ=255)
                        aaaaTAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCAGGCGAACaaa                                                                                                                    >  2:2893624/1‑140 (MQ=255)
                        aaaaTAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAAACGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACaaa                                                                                                                    >  2:10163176/1‑140 (MQ=255)
                        aaaaTAACGAGAATATTTCAGTCTCTCAGCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACaaa                                                                                                                    >  2:11407930/1‑140 (MQ=255)
                          aaaaaCCAGAATATTACATCCTCACATCCTGTGGCGCTCCTGTCTTGTGCATTGCTTCATAAAAACACTGGCCCAAGTAGCGC‑GCCGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGACCAAAAt                                                                                                                  <  1:2159275/137‑1 (MQ=18)
                            tAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATcg                                                                                                                <  2:5974920/140‑1 (MQ=255)
                            tAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATcg                                                                                                                <  2:1373284/140‑1 (MQ=255)
                             aaCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGGGGGGGCGG‑CCCAACGCCGCCCCCCCCAGCACCCCCCGGCGCAGGGGGACaaaaaagc                                                                                                               >  1:3531578/1‑136 (MQ=25)
                             aaCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCCAACGCCGCCGCCCCCAGCACCCCCCGGCTCTGGCGAACAAAATagc                                                                                                               >  2:4238939/1‑140 (MQ=25)
                              aCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCCATCGCCGCCGCCCCCAGCACCCCCCGGCTCTGGCGAACAAAATcgcc                                                                                                              >  2:7044209/1‑140 (MQ=255)
                              aCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATAGCCGCCCCCCCCAGCACCCCCGGGCTCTGGCGAACAAAATcgcc                                                                                                              >  2:6077928/1‑140 (MQ=255)
                               cGAGACTATTTCAGTCTCTCATCCTGGTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATcgccg                                                                                                             <  2:11288927/140‑1 (MQ=255)
                               cGAGAATATTTCAGTCTCTCATCCTGGTGCGCTCCTGTCATGTGCATTGCTTCATATACTCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATcgccg                                                                                                             <  1:2950679/140‑1 (MQ=255)
                                     tatTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTgcgc                                                                                                       <  1:7643098/140‑1 (MQ=255)
                                           aGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAAAACCCCCCGCCCCCACCACCCCCCGGCACATGCGAACAAAAAACCCGCTGCGCCGTGcc                                                                                                 >  2:4621095/1‑140 (MQ=18)
                                            gTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGccc                                                                                                <  2:3723933/140‑1 (MQ=255)
                                             tctctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGGCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCt                                                                                               >  2:6813607/1‑140 (MQ=255)
                                             tctctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAAACGCCGCCGCCCCCAGCACCCCCCGGCTCTGGCGAACAAAAACGCCCCAGCGCCGTGccca                                                                                               >  2:10943261/1‑139 (MQ=18)
                                             tctctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAAACGCCGCCCCCCCCAGCACCCCCCGGCTCAGGCGAACAAAAAAGCCGCGGCGCGGTGccca                                                                                               >  2:750380/1‑139 (MQ=18)
                                             tctctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAAACACCGCCCCCCCCACCACCCCCCGGCCAAGGCGAACAAAAAATCCGCAGCGCCGTGccca                                                                                               >  1:851329/1‑139 (MQ=18)
                                                 tcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCCCCCCCTGCACCCCCCGGCTCTGGCGAACAAAATCTCCGCGGCGCGGGGCCCTCCGc                                                                                           >  2:7128777/1‑140 (MQ=18)
                                                   aTCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCtt                                                                                         <  2:4855956/140‑1 (MQ=255)
                                                         ttGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGCGG‑CCCAAAGCCGCCGCCCCCCCCCCCCCCCGGGTAAGGGGCACAAAAACGCCGGGGCGCGGGGGCCCCGGCGTAAcccg                                                                                   >  2:2119975/1‑139 (MQ=16)
                                                         ttGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAAAAGCCGCCCCCCCCAGCAACCCCCGGCGAAGGCGAAAAAAAACGCCCCAGCGCGGTGCCCCCCGCGTATacca                                                                                   >  2:1255461/1‑139 (MQ=17)
                                                           gcgcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCCCACACCCCCCCCCCCAGCACCCCCCGGCACTGGCGAACAAAAAAGCCCCAGCCCGGTGCCCACCGCATAAccccaa                                                                                 >  2:5353428/1‑137 (MQ=12)
                                                           gcgcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCCATCGCCGCCGCCCCCCGCACCCCCCGGCGCAGGCGAACAAAAACCCCGCGGCGCGGTGCCCCCGGCTTATCCCATa                                                                                 >  2:6486007/1‑140 (MQ=18)
                                                           gcgcTCCTGTCATGTGCATTGCTTCATATAAGCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTa                                                                                 <  1:1447128/140‑1 (MQ=255)
                                                            cgcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGTGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTAc                                                                                <  1:4880550/140‑1 (MQ=255)
                                                             gcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCCCCCCCGCCCCCCGCACCCCCCGGCACTGGCGAACAAAAACGCCGCGGCGCGGTGCCCACCGCAGATACCTTACg                                                                               >  2:777651/1‑140 (MQ=18)
                                                             gcTCCTGTCATGTGCATAGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑ACAAACTCCGCCCCCCCCACAACCCCCCGGCTCAGGCGAAAAAAATCGCCGCAGCGCGGAGCCCAAGGCGTAACACTTACg                                                                               >  2:11016370/1‑140 (MQ=12)
                                                              cTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAAACGCCGCCGCCCCCAGCACCCCCCGGCTCAGGCGAACAAAATCCCCGCAGCGCCGTGCCCACGGCATATACCATAAgg                                                                              >  2:10145684/1‑140 (MQ=18)
                                                              cTCCTGTCATGTGCATTGCTTCATATAAGCACTGGCGCAAGGAGCGC‑GGGGGGGGCGG‑CCCAAACCCCCCCCCCCCCCCCCCCCCCCGCCCCGGGGGACAAAAACACCGCCGCGCGGGGCCCGCGGCGTATCCCCTActg                                                                              >  1:8250928/1‑138 (MQ=12)
                                                                ccTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCt                                                                            <  2:3297268/140‑1 (MQ=255)
                                                                   gTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGCGCGC‑GCAGGGGGCCG‑CCCAACGCCCCCCCCCCCGGCACCCCCCGGCGCAGGCGACCAAAATAGCCCCGGCGCGGGGCCCCCCGCGTATCCCCTACCGCGAcc                                                                         >  2:8820873/1‑140 (MQ=255)
                                                                   gTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCAGCCCCCCCCGGCGCAGGCGGACAAAATCGCCCCGGGGCGGGGCCCGCCGCGTTTACCGTAAGGCTAcc                                                                         >  2:5531342/1‑140 (MQ=17)
                                                                           cATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCggg                                                                 <  2:9294296/140‑1 (MQ=255)
                                                                           acttGCTTCCTATAATCACTGGCGCAAGGCGCGC‑GCAGGGGGCGG‑CCCAACGCCGCCGCCCCCTGCACCCCAGGGATCTGTCTGACAAACTCTCAGCAGCGCGGTGGCCACCGCTTTGGCCCTACGGCTAGCgggggggg                                                                 >  2:6642010/3‑135 (MQ=9)
                                                                             ttGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcg                                                               <  1:9969495/140‑1 (MQ=255)
                                                                             ttGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcg                                                               <  1:8337039/140‑1 (MQ=255)
                                                                             ttGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcg                                                               <  2:4501565/140‑1 (MQ=255)
                                                                              tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcgc                                                              <  2:6172120/140‑1 (MQ=255)
                                                                              tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCACGGGGCGG‑CCCAACGCCCCCCCCCCCAGCACCCCCCGGCTATGGCGAACAAAAAAACCCCTGCGCGGTGCCCACCGCTAAAACCATAACGCTAACCGGTAGGgcgc                                                              >  2:9871813/1‑140 (MQ=9)
                                                                                cTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATAGCCCCCGCCCCCATCACCCCCGGGCTCTGGCGAAAAAAAAAGCCCCTGCGCGGTGCCCACCGCATATACCTTAAGGCTAACGGGTAGGGGGCGa                                                            >  2:3843828/1‑140 (MQ=14)
                                                                                   cATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAAACGCCGCCGCCCCCAGCACCCCCGGGCACTGGCGAACAAAATAGCCGCTGCGCGGTGCCCACGGCGTATCCCTTAAGGCTACCGGGTCGGGCGCGAGGt                                                         >  2:7612043/1‑140 (MQ=14)
                                                                                     tataATCACTGGCGCAAGGAGCGC‑GGAGGGGGCGG‑CCAATAGCCGCCGCCCCCAGCACCCCCGGGCACTGGCGAAAAAAAACGCCCCAGCGCCGTGACCACCGCTAAAACCATACCGCGACCGGGGCGGGCGCGacggaa                                                       >  2:8162183/1‑135 (MQ=2)
                                                                                     tataATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTaa                                                       <  2:4421682/140‑1 (MQ=37)
                                                                                       taATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACa                                                     <  2:5203321/140‑1 (MQ=35)
                                                                                       caaTCACTGGCGCATGGAGCGC‑GCTGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGTGCTCTGGCGCACAAAATCGCCTCTGCGCGGTGCACTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGATGTAACa                                                     <  1:5822292/139‑1 (MQ=11)
                                                                                        aaTCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACAt                                                    <  1:5797711/140‑1 (MQ=34)
                                                                                        aaTCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACAt                                                    <  2:566078/140‑1 (MQ=34)
                                                                                         aTCACTGGCGCAAGGAGCGC‑GCTGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATc                                                   <  1:7798646/140‑1 (MQ=18)
                                                                                         aTCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATc                                                   <  1:6633784/140‑1 (MQ=33)
                                                                                          tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCCCCGCCCCCAGCACCCCCCGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATACCTTACGGCTAACGGGTCGGGCGCGAGGGAACATcc                                                  >  2:10461050/1‑140 (MQ=11)
                                                                                          tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAAACGCCCCCGCCCCCAGCACCCCCCGGCTCAGGCGAACAAAATCGCCCCGGCGCGGTGCCCACGGCGTATCCCATACGGCAACCCGGTCGGGCGCGAGGTAAccacc                                                  >  2:866433/1‑136 (MQ=11)
                                                                                          tCACTGGCGAATGGAGCGC‑GCAGGGGGCGG‑CAAATCGCGGCCGCCCCATGCACCCCCGGGCTCTGGAGAACAAAATCGCCGCTGCGCGGTGACCTCGGCTTATCCCTTCCGGCTTCCGTGTCGGGCGCGAGGTAACATcc                                                  <  1:9689329/140‑1 (MQ=11)
                                                                                             cTGGCGCAAGGAGCGC‑GCCGGGGGCGG‑CCCATCGCCGCCGCCCCCAGCACCCCCCGGCTCTGGCGAACAAAATAGCCGCTGCGCCGTGCCCTCGGCTTATCCCTAACGGCTACCGGGGCGGGCGCGAGGTAACAAcccag                                               >  2:6691226/1‑138 (MQ=11)
                                                                                               ggCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCAGCCCCCCCGGGCTCTGGCGAACAAAATCGCCGCGGCGCGGTGCCCTCGGCTTATCCCATACGGCTACCCGGTCGGGCGCGAGGTAACATCCCAGTa                                             >  2:10527316/1‑140 (MQ=11)
                                                                                                gcgcAAGGAGCGC‑GCAGGGGGTGG‑CCAATCGCCGCCGCCCCCAGCACCCCCGGGCTCTGGCGAACAAAAACGCCGCTGCGCGGTGCCCTCGGCTTATACCTTACGGCTACCCGGTCGGGCGCGAGGTAACAACCCTGTaa                                            >  2:396482/1‑140 (MQ=11)
                                                                                                    aaGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAcg                                        <  2:6773584/140‑1 (MQ=32)
                                                                                                    aaGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAcg                                        <  2:2685447/140‑1 (MQ=32)
                                                                                                     aGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAcgc                                       <  1:691696/140‑1 (MQ=32)
                                                                                                     aGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAcgc                                       <  2:11034744/140‑1 (MQ=32)
                                                                                                        aGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGcc                                    <  2:1661326/140‑1 (MQ=32)
                                                                                                          cgc‑gcAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt                                  <  2:2794913/140‑1 (MQ=32)
                                                                                                          cgc‑gcAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt                                  <  1:11306564/140‑1 (MQ=32)
                                                                                                            c‑gcAGGGGGCGG‑CCCAACGCCGCCGCCCCCAGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCGGCGCGGTGCCCTCGGCGTATACCTTAAGGCTAACGGGTCGGGCGCGCGGTTACAAACCAGTAAAACGCGCCcaca                                >  2:9381386/1‑140 (MQ=11)
                                                                                                               cAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGc                              <  1:9317935/140‑1 (MQ=32)
                                                                                                               cAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGc                              <  1:4116554/140‑1 (MQ=32)
                                                                                                                aGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGcc                             <  2:8424695/140‑1 (MQ=32)
                                                                                                                aGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGcc                             <  2:11431980/140‑1 (MQ=32)
                                                                                                                    ggcgg‑cCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca                         <  2:8646878/140‑1 (MQ=32)
                                                                                                                    ggcgg‑cCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca                         <  2:9997285/140‑1 (MQ=32)
                                                                                                                    ggcgg‑cCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca                         <  1:10962594/140‑1 (MQ=32)
                                                                                                                       gg‑cCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATcc                      <  1:10476601/140‑1 (MQ=32)
                                                                                                                        g‑cCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTaa                                                       <  2:1526041/106‑1 (MQ=32)
                                                                                                                        g‑cCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTaa                                                       >  1:1526041/1‑106 (MQ=32)
                                                                                                                        g‑cCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCa                     >  2:6944797/1‑140 (MQ=32)
                                                                                                                        g‑cCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATAGCCGCTGCGCGGTGCCCTCGGCGTAACCCTTGAGGCAACCCGGTCGGGCGCGAGGGAACATCCCTGGAAAAAGCGCCCGAAGCCCACAACCa                     >  1:6151018/1‑140 (MQ=11)
                                                                                                                             aTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAtgtg                 >  2:132746/1‑140 (MQ=32)
                                                                                                                             aTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAtgtg                 >  1:668977/1‑140 (MQ=32)
                                                                                                                             aTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAtgtg                 >  2:3900188/1‑140 (MQ=32)
                                                                                                                             aTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGGACCATCCCTGTAAAACGCGCCCTCAGCCCACATCCAtgtg                 >  1:10049417/1‑140 (MQ=17)
                                                                                                                               cgccgccgcCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTggg               <  2:10696037/140‑1 (MQ=32)
                                                                                                                                gccgccgccCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGc              <  1:10163177/140‑1 (MQ=32)
                                                                                                                                   gccgccCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGNCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGc           <  1:6036125/140‑1 (MQ=17)
                                                                                                                                    ccgccCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGAGCCCTCGGCTAATCCCTTACGGCTACCGGGTCGGGCGCGAGTTAACATCCCTGTAAAACGCGCCCTCAGCCCACCTCCATGTGGGCTGcc          >  2:9122436/1‑140 (MQ=255)
                                                                                                                                      gccCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGcccc        <  1:6486008/140‑1 (MQ=32)
                                                                                                                                       cccccTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTCCGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCg       <  2:8370218/140‑1 (MQ=17)
                                                                                                                                       cccccTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCg       <  1:4266525/140‑1 (MQ=32)
                                                                                                                                         cccTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGc     <  2:1867702/140‑1 (MQ=32)
                                                                                                                                            tGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAACCGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCtt  <  1:966435/140‑1 (MQ=17)
                                                                                                                                            |                                                                                                                                           
AATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTT  >  NZ_CP025268/2233101‑2233378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑