BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	1,293,160	G→A	noncoding (55/132 nt)	CXP41_RS06840 ←	RtT sRNA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,293,160	0	G	A	79.0%	227.6 / 64.7	163	noncoding (55/132 nt)	CXP41_RS06840	RtT sRNA
Reads supporting (aligned to +/- strand): ref base G (10/19); new base A (24/85); total (42/121)
Fisher's exact test for biased strand distribution p-value = 2.24e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.77e-01

Only 100 of 163 total aligned reads displayed.

TTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAA  >  NZ_CP025268/1293054‑1293283

cttgagaGTTCAGGGACTTTTGCAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCAt                                                                                            <  1:7836158/134‑1 (MQ=11)

cttgagaGTTCAGGGACTTTTGACAGTGAGGGTGGGGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCAt                                                                                            <  1:7835139/134‑1 (MQ=11)

cttgagaGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTTCATGAGGCAAAGCTCTCTCGCTGGCGCACGAGTCGAACCTTGGTCGAAGCGTCTCaa                                                                                            >  2:1423359/7‑139 (MQ=11)

          cAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGc                                                                                  >  2:7913591/1‑140 (MQ=255)

           aGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTTCGCGCATCTCCCTTCGGGTCGTTGCCTGTGGCAACGATCTCTCGCTGTCGCTCGAATCGAACCTTTGTCGAAGCTTCTCAACCTTCCCCgat                                                                                 >  2:971550/1‑138 (MQ=11)

            ggtaaatttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCACGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCAt                                                                                <  1:1327365/134‑1 (MQ=11)

               aCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                             <  2:5759895/140‑1 (MQ=16)

                 ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCTCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                           <  1:4263652/140‑1 (MQ=255)

                  tttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGGGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATGCTTGCCCGCATGGGCAg                                                                          >  1:10316350/1‑140 (MQ=11)

                  tttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAg                                                                          >  2:2082715/1‑140 (MQ=12)

                  tttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAg                                                                          >  2:1257174/1‑140 (MQ=12)

                   ttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGACGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGa                                                                         <  1:7222076/140‑1 (MQ=12)

                   ttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTATCGCAGGCGCGCGAGTCGAACCGTGGTCGAAACTTCTCAACCATACCCCCCAGGGCAGa                                                                         >  1:9862140/1‑140 (MQ=11)

                     gAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAat                                                                       <  1:5047807/140‑1 (MQ=12)

                                               tACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCGCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGGTTGAGAGt                                             >  2:3550555/1‑140 (MQ=255)

                                                     gcgcTGCGCGCTTGGACCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                       <  1:10215378/140‑1 (MQ=255)

                                                     gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCTAGTCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                       <  2:2848325/140‑1 (MQ=255)

                                                     gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCTAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                       <  1:10686035/140‑1 (MQ=255)

                                                     gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGGAGAAGATTTGATTGGGGATTCGCTTGTGAGTTCAggg                                       >  1:6394926/1‑140 (MQ=11)

                                                     gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                       <  2:1091576/140‑1 (MQ=21)

                                                     gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                       <  2:7832006/140‑1 (MQ=21)

                                                     gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                       <  1:8112765/140‑1 (MQ=21)

                                                      cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTTCGGCAACGATCTCTCGCTGTCGCTCGCGCCGAAACTTATTCGTAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGAGTGAGTCTTCGCTGGAGAGGTCAgggg                                      >  2:2004223/1‑139 (MQ=11)

                                                      cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTTATTGCGGATTCGGTTGTGAGTTCAGGGa                                      >  2:3024418/1‑140 (MQ=11)

                                                      cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTTCGGATTCGCTTGAGAGTTCAGGGa                                      >  2:8416072/1‑140 (MQ=255)

                                                      cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGa                                      >  1:8695273/1‑140 (MQ=25)

                                                      cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTACACGCATTGGCAGAATATTTGATTGCGGATTATCTAGTGAGTTCAGGGa                                      >  2:1214501/1‑140 (MQ=11)

                                                       gcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGAc                                     <  1:6639782/140‑1 (MQ=255)

                                                         tGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCGTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGGGAGTTCAGGGACtt                                   >  2:8411764/1‑140 (MQ=255)

                                                         tGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATACTTCCCCGCATGGGCAGAATATGTGATTGCGGATTCGCTTGTGAGTTCAGGGAcgt                                   >  2:5450282/1‑138 (MQ=11)

                                                           cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTATCGCTGACGCTCCAGCCGTACCTTTGTCGAAGCGTCTCATCCTTGCCCGCATGGGCAGAATATTTGTTTGGGGATTCGGTGGAGAGTTAAGGGACtttt                                 >  2:2362651/1‑140 (MQ=11)

                                                           cgcgcTTCGCCCTTCGGGTCGTTGCCGGCGGCAACGCGCTCTCGCGGTCGCGCGAGCCGAACCGTAGTCGAAGCTTATCATACGTCCCCGCATGGGCAGAATATTTGATTGGGGATTCGCTTGGGTGTTCAggggagttt                                 >  1:2739236/1‑134 (MQ=11)

                                                            gcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTg                                <  1:3777931/140‑1 (MQ=255)

                                                            gcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTg                                <  1:2167376/140‑1 (MQ=255)

                                                             cgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGa                               <  1:9476743/140‑1 (MQ=255)

                                                              gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGTCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCTGATTCGCTTGAGAGTTCAGGGACTTTTGaa                              <  1:2202799/140‑1 (MQ=11)

                                                              gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaa                              <  2:2609408/140‑1 (MQ=255)

                                                              gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaa                              <  1:4060752/140‑1 (MQ=255)

                                                              gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaa                              <  1:6717534/140‑1 (MQ=255)

                                                              gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCAGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaa                              <  2:10304956/140‑1 (MQ=255)

                                                                ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAg                            <  2:8821284/140‑1 (MQ=255)

                                                                  cGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCTAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGCCTTTTGAAAGTg                          <  1:10692833/140‑1 (MQ=11)

                                                                  cGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTAGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTg                          >  2:5219511/1‑140 (MQ=255)

                                                                  cGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTg                          <  1:4884429/140‑1 (MQ=255)

                                                                  cGCCATTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGTCGAACCTTCGTCGAAGCTTCTCCTCGTTCACCGCATGGGCAGTATATTTGATTGCGGATTCGCTTGAGAGTTCTGGGACTTTTGAAAGTg                          <  1:5673459/140‑1 (MQ=11)

                                                                   gCCCTTCGGGTCGTTGCCTGCGGCCACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTACCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGACAGTGa                         <  1:8094367/140‑1 (MQ=11)

                                                                   gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGACTATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGa                         <  1:3967124/140‑1 (MQ=255)

                                                                   gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGa                         <  1:3626545/140‑1 (MQ=255)

                                                                   gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGa                         <  1:3626975/140‑1 (MQ=255)

                                                                    cccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAt                        <  1:2027855/140‑1 (MQ=255)

                                                                     ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGAc                                     <  1:11350043/126‑1 (MQ=255)

                                                                     ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGAc                                     >  2:11350042/1‑126 (MQ=255)

                                                                     ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtg                       <  2:2278937/140‑1 (MQ=255)

                                                                     ccTTCGGGTCGGTGCCTGCGGCAACGCTCTCTCGCGGACGCTCGAGCCGCACCGTAGTCGAAGCTTCTCATCCGTCCCCGCATGGGCAGAATTTTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtg                       <  2:6745341/140‑1 (MQ=11)

                                                                      cTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtgg                      <  1:9373448/140‑1 (MQ=255)

                                                                      cTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtgg                      <  1:8382398/140‑1 (MQ=255)

                                                                        tCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCGTGGGCAGAATATTTGTTTGCGGATTCGTTTGGTAGTTCAGGGTCTTTTGAAAGTGAtggtg                    >  2:8549292/1‑140 (MQ=11)

                                                                        tCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCCTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtg                    >  2:9507204/1‑140 (MQ=255)

                                                                        tCGGGTCGTGGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGTAGCTTCTCCTCCTTCCCCGCTTGGGCATAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtg                    <  2:3134809/140‑1 (MQ=11)

                                                                         cGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtgg                   <  1:2100479/140‑1 (MQ=255)

                                                                         cGGGTCGGTGCCTGCGGCTACGCTCTCTCTCTGACTCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCACGCATTGGCAGTATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtgg                   <  1:7491890/140‑1 (MQ=11)

                                                                          gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtggt                  <  2:7234822/140‑1 (MQ=255)

                                                                          gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtggt                  <  2:3184590/140‑1 (MQ=255)

                                                                          ggctCGGTGCCTGCGTCAAAGCTCTCTCGCTGTCGCTCTAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtggt                  <  2:3567749/137‑1 (MQ=11)

                                                                           ggTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtggtg                 <  1:9393885/140‑1 (MQ=255)

                                                                           ggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACGTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATTTTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtggtg                 <  1:8866067/140‑1 (MQ=11)

                                                                            gTCGTTGCCGGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCGTAGTCGAAGCTTCTCATCCATCCCCGCATGGGCAGAATAATTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGTAAGTGAtggtggtgg                >  2:1314660/1‑140 (MQ=11)

                                                                             tCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggg               <  1:11148919/140‑1 (MQ=255)

                                                                             tCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGACGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGTCTTTTGAAAGTGATGGTGGTggg               <  1:850352/140‑1 (MQ=11)

                                                                             tCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGAATTTTGAAAGTGATGGTGGTggg               <  1:2743932/140‑1 (MQ=255)

                                                                             tCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCCTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggg               <  1:9507205/140‑1 (MQ=255)

                                                                              cGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAATCTTCTCATCGTTCCCCGCTTGGGCAGAATATTTTATTGCGGATTCGCTTGAGAGTTCAGTGACTTTTGAAAGTGATGGTGGTgggg              <  2:4329867/140‑1 (MQ=11)

                                                                               ggtGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCTGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg             <  2:6370425/138‑1 (MQ=255)

                                                                               gTTTCCTGCGGCAACGCTCTCTCGCTGGCGCTCTAGGCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTGATAGTTCAGTGACTTTTGAAAGTGATGGTGGTggggg             <  1:1298970/140‑1 (MQ=11)

                                                                               gTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCTAGTCGAACCATTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg             <  1:2336114/140‑1 (MQ=11)

                                                                               gTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg             <  2:11220158/140‑1 (MQ=255)

                                                                               gTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg             <  2:2812432/140‑1 (MQ=255)

                                                                               gTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCCAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTAGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg             <  1:5924845/140‑1 (MQ=11)

                                                                               gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGTTTGCGGATTCGCTTGAGAGTTCAGTGACTTTTGTAAGTGATGGTGGTggggg             <  1:2877028/140‑1 (MQ=11)

                                                                               gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTTAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg             <  1:3941762/140‑1 (MQ=255)

                                                                               gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg             <  1:8792524/140‑1 (MQ=255)

                                                                               gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg             <  1:6331352/140‑1 (MQ=255)

                                                                               gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg             <  1:7159541/140‑1 (MQ=255)

                                                                               gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg             <  2:6300697/140‑1 (MQ=255)

                                                                               gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTGAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg             <  2:8749782/140‑1 (MQ=255)

                                                                               gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCATTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGAGTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg             <  2:9868568/140‑1 (MQ=11)

                                                                               gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCCAGCCGAACCTTAGACGAAGCTTCTCATCCTTCCCCGCATGGGCATAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGAGATGGTGGTggggg             <  2:7645762/140‑1 (MQ=11)

                                                                               gTTGCCTGAGTCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTATTCGAAGCTTAACATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGTTGGTggggg             <  2:3784399/140‑1 (MQ=11)

                                                                                 tGCCTGCGGCAACGCTCTCACGCTGACGCTCGAGCCGAACCATAGTCGAAGCTTCACATCCTTCCCCGCAAGGGCAGAATATTTGATTTCGGAATAACTTGAGAGTTAAGGGTCGTTAGAAAATGATGGTGGTgggggca           >  2:4263651/1‑138 (MQ=11)

                                                                                  tgcTGCGGCAACGCTCTCTCGCTGTCGCTCTAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAg          <  2:11409059/138‑1 (MQ=11)

                                                                                    cTGCGGCCACGCTCTCTCGCTGACGCTCGAGCCGACCGTTTGTCGTAGCTTCTGAGCCTTCCACGCATGGGCAGATGATTTGATTGCGGATTCGCTTGAGAGTTCCGGGACTTTTGCAAGGGATGGTGGTGGGGGAAGGa        <  2:8242768/140‑1 (MQ=11)

                                                                                    cTGCGGCAACGCTCTCTCGCTGACGCTCGCGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGATTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa        <  2:8312713/140‑1 (MQ=255)

                                                                                    cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa        <  1:8546556/140‑1 (MQ=255)

                                                                                    cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa        <  2:4704074/140‑1 (MQ=255)

                                                                                    cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCGTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa        <  2:6280984/140‑1 (MQ=255)

                                                                                       cGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCAGGGGCAGAAAATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAtta     >  2:1116993/1‑139 (MQ=255)

                                                                                        ggCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttac    <  2:8695272/140‑3 (MQ=255)

                                                                                         gCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttact   <  2:10192298/140‑4 (MQ=255)

                                                                                          cAACTCTCTCTCGCTGACGCTCTTTCCTCACCTTCGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGATTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttactc  <  1:9729539/140‑5 (MQ=11)

                                                                                          cAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCCTGGGCAGAATATTTGATTGCGGATTCGCTGGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAGTCGac  >  1:654620/1‑139 (MQ=11)

TTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAA  >  NZ_CP025268/1293054‑1293283

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`