BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	1,293,179	A→G	noncoding (36/132 nt)	CXP41_RS06840 ←	RtT sRNA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,293,179	0	A	G	98.2%	413.2 / NA	165	noncoding (36/132 nt)	CXP41_RS06840	RtT sRNA
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (40/122); minor base T (2/1); total (42/123)
Fisher's exact test for biased strand distribution p-value = 1.60e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 165 total aligned reads displayed.

TTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCA  >  NZ_CP025268/1293054‑1293304

cttgagaGTTCCGGGACTTTTGAAAGGGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCAt                                                                                                                 <  2:3042976/134‑1 (MQ=1)

cttgagaGTTCAGGGACTTTTGACAGTGAGGGTGGGGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCAt                                                                                                                 <  1:7835139/134‑1 (MQ=11)

cttgagaGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCAt                                                                                                                 <  1:8416073/134‑1 (MQ=11)

          cAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGc                                                                                                       <  2:8082820/140‑1 (MQ=255)

          cAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGc                                                                                                       >  2:7913591/1‑140 (MQ=255)

          cAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCACTCTCGCTGGCGCTCGAGGCGGACCTTGGTCGAAGCTTCGCATCCTTCCCCGc                                                                                                       >  1:9970237/1‑140 (MQ=11)

           aGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTTCGCGCATCTCCCTTCGGGTCGTTGCCTGTGGCAACGATCTCTCGCTGTCGCTCGAATCGAACCTTTGTCGAAGCTTCTCAACCTTCCCCgat                                                                                                      >  2:971550/1‑138 (MQ=11)

            ggtaaatttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCACGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCAt                                                                                                     <  1:1327365/134‑1 (MQ=11)

               aCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                  <  2:5759895/140‑1 (MQ=16)

                 ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCTCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                <  1:4263652/140‑1 (MQ=255)

                  tttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGGGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATGCTTGCCCGCATGGGCAg                                                                                               >  1:10316350/1‑140 (MQ=11)

                     gAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAat                                                                                            <  1:5047807/140‑1 (MQ=12)

                                                     gcgcggcgcgCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                            <  1:984714/140‑1 (MQ=255)

                                                     gcgcTGCGCGCTTGGACCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                            <  1:10215378/140‑1 (MQ=255)

                                                     gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCTAGTCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                            <  2:2848325/140‑1 (MQ=255)

                                                     gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCTAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                            <  1:10686035/140‑1 (MQ=255)

                                                     gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGGAGAAGATTTGATTGGGGATTCGCTTGTGAGTTCAggg                                                            >  1:6394926/1‑140 (MQ=11)

                                                     gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                            <  2:1351381/140‑1 (MQ=21)

                                                     gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                            <  2:7832006/140‑1 (MQ=21)

                                                     gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                            <  1:942938/140‑1 (MQ=21)

                                                     gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                            <  2:5802516/140‑1 (MQ=21)

                                                      cgcTGTGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCGCTCACGCTGGCGCTCGAGCCGAACCTGAGTCGAAGCTTCTCATCCATCCCCGCATGGGCAGAATAGTTGATTGCGGCTTCGGTTGAGAGTTCAGGGa                                                           >  2:1169858/1‑140 (MQ=11)

                                                      cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTTCGGCAACGATCTCTCGCTGTCGCTCGCGCCGAAACTTATTCGTAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGAGTGAGTCTTCGCTGGAGAGGTCAgggg                                                           >  2:2004223/1‑139 (MQ=11)

                                                      cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTTCGGATTCGCTTGAGAGTTCAGGGa                                                           >  2:8416072/1‑140 (MQ=255)

                                                      cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGa                                                           >  1:8695273/1‑140 (MQ=25)

                                                       gcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCGTCTCAACCTTCCCCGCATTGGCAGAAGATTTGATTGCGGATTCGCTTGAGAGTTCAGGGag                                                          >  1:7417506/1‑139 (MQ=11)

                                                         tGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCGTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGGGAGTTCAGGGACtt                                                        >  2:8411764/1‑140 (MQ=255)

                                                         tGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATACTTCCCCGCATGGGCAGAATATGTGATTGCGGATTCGCTTGTGAGTTCAGGGAcgt                                                        >  2:5450282/1‑138 (MQ=11)

                                                         tGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCGTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACtt                                                        >  2:3413344/1‑140 (MQ=255)

                                                           cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTATCGCTGACGCTCCAGCCGTACCTTTGTCGAAGCGTCTCATCCTTGCCCGCATGGGCAGAATATTTGTTTGGGGATTCGGTGGAGAGTTAAGGGACtttt                                                      >  2:2362651/1‑140 (MQ=11)

                                                           cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAAAGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCGTCCCCGCATGGGCAGAATATTTTATTTCGGATTCGGTTGTGAGTTAAGGGACtttt                                                      >  2:4075964/1‑140 (MQ=11)

                                                           cgcgcTTCGCCCTTCGGGTCGTTGCCGGCGGCAACGCGCTCTCGCGGTCGCGCGAGCCGAACCGTAGTCGAAGCTTATCATACGTCCCCGCATGGGCAGAATATTTGATTGGGGATTCGCTTGGGTGTTCAggggagttt                                                      >  1:2739236/1‑134 (MQ=11)

                                                            gcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTg                                                     <  1:2167376/140‑1 (MQ=255)

                                                              gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaa                                                   <  1:6717241/140‑1 (MQ=255)

                                                              gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaa                                                   <  1:6717534/140‑1 (MQ=255)

                                                              gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaa                                                   <  2:5141327/140‑1 (MQ=255)

                                                               cTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaaa                                                  <  1:4356909/140‑1 (MQ=255)

                                                                ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAg                                                 <  2:8821284/140‑1 (MQ=255)

                                                                ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCGCTCTCGCGGACGCTCGAGCCGCACCGTAGTCGAAGCTTCTCAACCTTACCCGCCTGGGCCGAATATTTGTTTTGGGATTCGCTGGAGCGTTAAGGGCCGTTTGaaat                                                 >  1:8082821/1‑139 (MQ=2)

                                                                  cGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCTAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGCCTTTTGAAAGTg                                               <  1:10692833/140‑1 (MQ=11)

                                                                  cGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAtgtg                                               <  1:8231542/140‑1 (MQ=255)

                                                                  cGCCATTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGTCGAACCTTCGTCGAAGCTTCTCCTCGTTCACCGCATGGGCAGTATATTTGATTGCGGATTCGCTTGAGAGTTCTGGGACTTTTGAAAGTg                                               <  1:5673459/140‑1 (MQ=11)

                                                                   gCCCTTCGGGTCGTTGCCTGCGGCCACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTACCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGACAGTGa                                              <  1:8094367/140‑1 (MQ=11)

                                                                   gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGACTATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGa                                              <  1:3967124/140‑1 (MQ=255)

                                                                   gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGa                                              <  1:3626545/140‑1 (MQ=255)

                                                                    cccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAt                                             <  1:2027855/140‑1 (MQ=255)

                                                                     ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGAc                                                          <  1:11350043/126‑1 (MQ=255)

                                                                     ccTTCGGGTCGGTGCCTGCGGCAACGCTCTCTCGCGGACGCTCGAGCCGCACCGTAGTCGAAGCTTCTCATCCGTCCCCGCATGGGCAGAATTTTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtg                                            <  2:6745341/140‑1 (MQ=11)

                                                                      cTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtgg                                           <  1:9373448/140‑1 (MQ=255)

                                                                        tCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGTCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTTATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtg                                         <  1:9004029/140‑1 (MQ=11)

                                                                        tCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCGTGGGCAGAATATTTGTTTGCGGATTCGTTTGGTAGTTCAGGGTCTTTTGAAAGTGAtggtg                                         >  2:8549292/1‑140 (MQ=11)

                                                                        tCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCCTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtg                                         >  2:9507204/1‑140 (MQ=255)

                                                                         cGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtgg                                        <  1:2100479/140‑1 (MQ=255)

                                                                         cGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtgg                                        <  2:2160634/140‑1 (MQ=255)

                                                                         cGGGTCGGTGCCTGCGGCTACGCTCTCTCTCTGACTCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCACGCATTGGCAGTATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtgg                                        <  1:7491890/140‑1 (MQ=11)

                                                                          gggTCGTTGCGTGCGGCAACGCTCTCTCGCTGTCGCTCGTGCCGAACCTTAGTCGAAGCTTCTCTTCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGCAAGTGAtggtggt                                       <  2:11298523/140‑1 (MQ=11)

                                                                          gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCCAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtggt                                       <  2:10448071/140‑1 (MQ=255)

                                                                          gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGTTTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtggt                                       <  1:2321966/140‑1 (MQ=255)

                                                                          gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtggt                                       <  2:3184590/140‑1 (MQ=255)

                                                                          gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtggt                                       <  2:7621760/140‑1 (MQ=255)

                                                                          gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtggt                                       <  2:7234822/140‑1 (MQ=255)

                                                                          ggctCGGTGCCTGCGTCAAAGCTCTCTCGCTGTCGCTCTAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtggt                                       <  2:3567749/137‑1 (MQ=11)

                                                                            gTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATTGGCAGAAAATTTGATTGCGGATTCGCTTTAGAGGTCAGGGACTTTTGAAAGTGAtggtggtgg                                     >  2:2948559/1‑140 (MQ=11)

                                                                            gTCGTTGCCGGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCGTAGTCGAAGCTTCTCATCCATCCCCGCATGGGCAGAATAATTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGTAAGTGAtggtggtgg                                     >  2:1314660/1‑140 (MQ=11)

                                                                             tCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggg                                    <  1:11148919/140‑1 (MQ=255)

                                                                             tCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGACGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGTCTTTTGAAAGTGATGGTGGTggg                                    <  1:850352/140‑1 (MQ=11)

                                                                             tCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCCTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggg                                    <  1:9507205/140‑1 (MQ=255)

                                                                             gcGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCGTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCTGGGACTTTTGAAAGTGATGGTGGTggg                                    <  2:2483179/139‑1 (MQ=255)

                                                                              cGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAATCTTCTCATCGTTCCCCGCTTGGGCAGAATATTTTATTGCGGATTCGCTTGAGAGTTCAGTGACTTTTGAAAGTGATGGTGGTgggg                                   <  2:4329867/140‑1 (MQ=11)

                                                                               ggtGCCTGCGGCTACGCTCTCTCGCTTACGCTCGAGCCGATACTGAGTCGAATCTTCTCATGCGTCCCCGATTGGGCAGATTTTTTGATTGCGGAGTCGGTTGAGATTTCATGGAATTATGTAAGTGATGGTGGTggggg                                  <  2:1748825/138‑1 (MQ=2)

                                                                               gTTTCCTGCGGCAACGCTCTCTCGCTGGCGCTCTAGGCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTGATAGTTCAGTGACTTTTGAAAGTGATGGTGGTggggg                                  <  1:1298970/140‑1 (MQ=11)

                                                                               gTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCTAGTCGAACCATTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                  <  1:2336114/140‑1 (MQ=11)

                                                                               gTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGACGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                  <  2:11091135/140‑1 (MQ=255)

                                                                               gTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCCAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTAGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                  <  1:5924845/140‑1 (MQ=11)

                                                                               gTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGACGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                  <  2:2774150/140‑1 (MQ=11)

                                                                               gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGTTTGCGGATTCGCTTGAGAGTTCAGTGACTTTTGTAAGTGATGGTGGTggggg                                  <  1:2877028/140‑1 (MQ=11)

                                                                               gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTTAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                  <  1:3941762/140‑1 (MQ=255)

                                                                               gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGTGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                  <  2:1240977/140‑1 (MQ=255)

                                                                               gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                  <  1:8792524/140‑1 (MQ=255)

                                                                               gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                  <  1:7159541/140‑1 (MQ=255)

                                                                               gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                  <  1:6331352/140‑1 (MQ=255)

                                                                               gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                  <  1:403218/140‑1 (MQ=255)

                                                                               gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                  <  2:6300697/140‑1 (MQ=255)

                                                                               gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                  <  2:6306090/140‑1 (MQ=255)

                                                                               gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTGAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                  <  2:8749782/140‑1 (MQ=255)

                                                                               gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCATTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGAGTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                  <  2:9868568/140‑1 (MQ=11)

                                                                               gTTGCCTGAGTCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTATTCGAAGCTTAACATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGTTGGTggggg                                  <  2:3784399/140‑1 (MQ=11)

                                                                                  tgcTGCGGCAACGCTCTCTCGCTGTCGCTCTAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAg                               <  2:11409059/138‑1 (MQ=11)

                                                                                    cTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTCGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                             <  1:9498314/140‑1 (MQ=255)

                                                                                    cTGCGGCAACGCTCTCTCGCTGACGCTCGCGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGATTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                             <  2:8312713/140‑1 (MQ=255)

                                                                                    cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                             <  2:4704074/140‑1 (MQ=255)

                                                                                       cGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCAGGGGCAGAAAATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAtta                          >  2:1116993/1‑139 (MQ=255)

                                                                                        gtcAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGATTGGGCAGAATATTTGATTGCGGATTCGCTTGAGATTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttac                         <  1:2812771/138‑3 (MQ=11)

                                                                                        gggtaCGCTCTCTCGCTGACGCTCGAGCCGAACCTTTGTCGTAGCTTCTCATCCTTCACCGAATGGGCAGAATATTTGATTGCGGCTTCGCTTGAGAGTTCTGGGAATTTTGACAGTGATGGTGGTGGGGGAAGGAttac                         <  1:8564183/136‑3 (MQ=11)

                                                                                        ggCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttac                         <  2:8695272/140‑3 (MQ=255)

                                                                                         gCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttact                        <  2:10192298/140‑4 (MQ=255)

                                                                                          cAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCCTGGGCAGAATATTTGATTGCGGATTCGCTGGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAGTCGac                       >  1:654620/1‑139 (MQ=11)

                                                                                          cAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGagtactc                       >  1:3670069/1‑134 (MQ=255)

                                                                                                           cgcCCGAGCCTACGCTTAGTCGACGCTTCTCCTCCCACCCCGCCTGGGCCGAATCTATGATTCCGGCTGCGCTTGAGTGTTCCGTGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGAc      <  1:4888975/140‑1 (MQ=12)

                                                                                                               ctagtcGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTCATTGCGGATTCGTTTGCCAATTCCGGGCCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCa  <  1:3741505/135‑1 (MQ=14)

TTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCA  >  NZ_CP025268/1293054‑1293304

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`