| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 3,864,419 | T→C | pseudogene (1103/1613 nt) | CXP41_RS20140 ← | PTS sugar transporter subunit IIB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 3,864,419 | 0 | T | C | 99.9% | 2369.5 / NA | 681 | pseudogene (1103/1613 nt) | CXP41_RS20140 | PTS sugar transporter subunit IIB |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (342/338); minor base A (0/1); total (342/339) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.98e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 681 total aligned reads displayed.
GTGCACATGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCC‑G‑C‑C‑ATGTTCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAA > NZ_CP025268/3864282‑3864554 | agCACATGAAGAACTGCACAATCAGTGAGCTGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCACTGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAg < 2:10941210/139‑1 (MQ=255) gCACATGTTGACCTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAATCCTAGt > 1:5348096/1‑140 (MQ=255) gCACATGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGt < 2:3547014/140‑1 (MQ=255) cacaTGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTc > 2:168720/1‑140 (MQ=255) cacaTGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTc > 2:8700218/1‑140 (MQ=255) tGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATc < 1:9846903/140‑1 (MQ=255) gAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGAc > 1:5195834/1‑140 (MQ=255) gAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGAc < 2:7528219/140‑1 (MQ=255) cTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTc < 1:2498441/140‑1 (MQ=255) cAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑G‑c > 1:8983762/1‑140 (MQ=255) aGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATACGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑G‑c‑c > 1:167109/1‑140 (MQ=255) gAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑G‑c‑cc < 1:10715290/140‑2 (MQ=255) gtgtGCGGAAAACCACGAAGTACAGCAGGGTACAGCACAACCCCCTGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTg < 1:7272814‑M1/140‑2 (MQ=255) gtgtGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTg < 2:8926441‑M1/140‑2 (MQ=255) gtgtGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTg < 2:10377431‑M1/140‑2 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAATGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTGTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcc > 2:9096243‑M1/1‑137 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcc > 2:2323176‑M1/1‑137 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcc > 2:1164913‑M1/1‑137 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcc < 2:2795990‑M1/140‑4 (MQ=255) ttcggAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAAAGGCGAATTTGGTCAGCATCATATCCGCGTGGTTGCTTAACATCGGGATCCAGTTTTGCGGTAAAACCAAGTAAAACAGACCTAC‑GCC‑C‑ATGTTgccc > 1:10408239‑M1/3‑136 (MQ=255) gCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgccca < 1:2902512‑M1/140‑6 (MQ=255) gCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgccca < 1:10553527‑M1/140‑6 (MQ=255) cGGAAAACCACGAAGTACAGCTGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccac < 2:6479735‑M1/140‑7 (MQ=255) ggAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccacc < 2:1482531‑M1/140‑8 (MQ=255) ggAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccacc < 1:10001722‑M1/140‑8 (MQ=255) gAAAACCACGTAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTGGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccacca < 2:9571949‑M1/140‑9 (MQ=255) aaCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacac < 2:6714098‑M1/140‑12 (MQ=255) aCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacacc > 2:7982116‑M1/1‑128 (MQ=255) cACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaa < 1:306219‑M1/140‑15 (MQ=255) aCGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaa < 1:8847770‑M1/140‑16 (MQ=255) cGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaag > 2:3478272‑M1/1‑124 (MQ=255) aaGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagag < 1:9296788‑M1/140‑19 (MQ=255) aaGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagag < 1:11433458‑M1/140‑19 (MQ=255) aaGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagag < 1:1478752‑M1/140‑19 (MQ=255) aGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagaga < 1:9948504‑M1/140‑20 (MQ=255) gTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagat < 2:10632746‑M1/140‑21 (MQ=255) gcagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacatt < 2:2479964‑M1/140‑26 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacgg > 1:7078000‑M1/1‑111 (MQ=255) gTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggt < 2:4447033‑M1/140‑31 (MQ=255) tatagcaCAACCCAATGGCGCTTTGGGTCAGCATGATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCGAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccctagagatccattactgtc > 2:3763519‑M1/4‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtc > 2:6363682‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtc > 1:798497‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtc > 2:1121849‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtc > 1:4478109‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtc > 2:5321673‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtc > 2:5694382‑M1/1‑109 (MQ=255) caACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattg > 2:2192521‑M1/1‑102 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattga > 1:10972692‑M1/1‑101 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattga > 1:9411523‑M1/1‑101 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattga > 2:8368934‑M1/1‑101 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgag > 2:605106‑M1/1‑100 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgag < 2:6158029‑M1/140‑41 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgagg > 1:1957510‑M1/1‑99 (MQ=255) cccAATGGCGAGTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgagg > 2:2897758‑M1/1‑99 (MQ=255) cagggcgaTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGATTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccg < 2:6913859‑M1/137‑45 (MQ=255) aaTGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccg < 2:1802473‑M1/140‑45 (MQ=255) aTGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgc > 1:3260789‑M1/1‑95 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgcc > 1:7696952‑M1/1‑94 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgcc > 2:7923721‑M1/1‑94 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaacgagatacattacggtcgacattgaggccgccagc < 1:7501679‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:5513438‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:5035073‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:5869262‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc > 1:4807923‑M1/1‑91 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAAACTAGTCTATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:4271769‑M1/140‑50 (MQ=255) gATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagca < 1:3881610‑M1/140‑51 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 1:2399426‑M1/1‑89 (MQ=255) tGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggc < 2:7121680‑M1/140‑55 (MQ=255) ggTCAGCATCATATCCGCGTGGTTGCTGAACCTCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgt < 2:401436‑M1/140‑57 (MQ=255) ggTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgt < 1:6226436‑M1/140‑57 (MQ=255) tCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgt > 1:68321‑M1/1‑82 (MQ=255) cAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtc > 2:2016161‑M1/1‑81 (MQ=255) cAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgta > 2:10514060‑M1/1‑81 (MQ=255) ccGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagc < 1:3673608‑M1/140‑71 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 1:10917803‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa < 1:11231292‑M1/140‑73 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 1:6122000‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggt < 1:5515157‑M1/98‑31 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑CTGTTgcccaccacacccaagagatacattacggtcgacatggaggccgccagcacggcgtgtaccgccaacagcaac > 2:3072733‑M1/1‑67 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgtggccgccagcacggcgtgtaccgcaaacagcaac > 1:5852654‑M1/1‑67 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcacc > 2:4193265‑M1/1‑67 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaac > 1:8694913‑M1/1‑67 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaac > 2:851714‑M1/1‑67 (MQ=255) gTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacg < 2:8111069‑M1/140‑75 (MQ=255) tGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc > 1:6610680‑M1/1‑65 (MQ=255) tGGTTGCTGAACATCGGGATCCAGTTTTGAGGTAAAACCTAGTCAATCAGACATCC‑G‑CAC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgactaccgcaaacagcaacgg > 1:8261480‑M1/1‑65 (MQ=255) gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAAACAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggacgacattgaggccgccagcacggcgtgtaccgcaaacagcaccggtg > 2:3339111‑M1/1‑63 (MQ=255) gCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑CTGTTgcccaccacaccaaagagatacattaaggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaa > 1:2246624‑M1/1‑60 (MQ=255) cATCGGGATCCAGTTTTGCGGTAAATCCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagataccttacggtcgacattgaggccgccagcacggcgtgtaccgaaaacagcaacggtgaaatgaaca > 2:4856400‑M1/1‑54 (MQ=255) aTCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacag > 1:2140204‑M1/1‑53 (MQ=255) tCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg > 1:1022356‑M1/1‑52 (MQ=255) tCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg > 2:10217728‑M1/1‑52 (MQ=255) tCGGGATCCAGTTTTACGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg < 2:9462281‑M1/140‑89 (MQ=255) tGCGGTAAAACCTAGTCTATCAGACCTCC‑G‑C‑CAATGTTgcccacctcaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaatgtaaattccag < 2:7773435‑M1/140‑103 (MQ=255) tGCGGTAAAACCTAGTCAATCAGACCTAC‑GCC‑C‑ATGTAgcccaccactccacagagtaacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggcaggtaaattccag < 2:740565‑M1/140‑103 (MQ=255) ggTAAAACCTAGTCAATCAGACCTCCTC‑C‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 2:4603963‑M1/140‑106 (MQ=255) ggTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 1:1258541‑M1/140‑106 (MQ=255) ggTAAAACCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 1:4033725‑M1/140‑106 (MQ=255) aaCCTAGTCAATCAGACCTCC‑GCC‑C‑ATGTTgcccaccacaccaaagagatacagtacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcgg < 1:9500730‑M1/140‑111 (MQ=255) aaCCTAGTCAATCAGACCTCC‑GCC‑C‑ATGGTgcccaccacaccaaagagatacattacgctcgacattgaggccgccagcacgtcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggaaaattccagcggttcgg < 1:4994162‑M1/140‑111 (MQ=255) | GTGCACATGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCC‑G‑C‑C‑ATGTTCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAA > NZ_CP025268/3864282‑3864554 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |