BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	1,879,869	(C)_5→6	pseudogene (521/821 nt)	nimR ←	DNA‑binding transcriptional regulator NimR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,879,864	1	.	C	98.3%	1424.0 / 13.8	417	pseudogene (526/821 nt)	nimR	DNA‑binding transcriptional regulator NimR
Reads supporting (aligned to +/- strand): ref base . (3/4); new base C (228/180); total (232/185)
Fisher's exact test for biased strand distribution p-value = 7.05e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 473 total aligned reads displayed.

CCTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑C‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGCGGG  >  NZ_CP025268/1879726‑1879998

ccTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑c                                                                                                                                        >  1:3113362/1‑140 (MQ=255)

ccTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑c                                                                                                                                        >  1:4211513/1‑140 (MQ=255)

 cTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑c‑c                                                                                                                                      <  2:6715698/140‑1 (MQ=255)

 cTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑c‑c                                                                                                                                      <  1:4458241/140‑1 (MQ=255)

 cTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑c‑c                                                                                                                                      <  1:409353/140‑1 (MQ=255)

   ttCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑c‑ccc                                                                                                                                    >  1:897269/1‑140 (MQ=255)

     cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑c‑ccccc                                                                                                                                  >  2:6778506/1‑139 (MQ=255)

     cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑c‑ccccc                                                                                                                                  >  2:6534511/1‑139 (MQ=255)

     cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑c‑ccccc                                                                                                                                  >  1:3654403/1‑139 (MQ=255)

     cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑c‑ccccc                                                                                                                                  >  2:2345020/1‑139 (MQ=255)

     cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑c‑ccccc                                                                                                                                  >  1:9443062/1‑139 (MQ=255)

     cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑c‑ccccc                                                                                                                                  >  2:9471872/1‑139 (MQ=255)

           tCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGa                                                                                                                             >  2:10671603/1‑140 (MQ=255)

            cccTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGAc                                                                                                                            <  1:2913539/140‑1 (MQ=255)

             ccTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACa                                                                                                                           >  1:8465239/1‑140 (MQ=255)

              cTGACGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAg                                                                                                                          <  1:3992041/140‑1 (MQ=255)

                      ccATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTc                                                                                                                  >  1:7801557/1‑140 (MQ=255)

                      ccATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTc                                                                                                                  >  1:2708642/1‑140 (MQ=255)

                      ccATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTc                                                                                                                  >  1:5908830/1‑140 (MQ=255)

                      ccATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTAATATCAGTCGGGCAAGATAGCGTTCACTCATAGCAAAAAAGCCAGCCAATTGCCCAAATTC‑C‑CCCCACTCGACAGGCCCTTTc                                                                                                                  >  2:7598092/1‑140 (MQ=255)

                       cATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCg                                                                                                                 <  2:1627041/140‑1 (MQ=255)

                       cATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCg                                                                                                                 <  2:1394791/140‑1 (MQ=255)

                         tAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGcc                                                                                                               <  1:6285209/140‑1 (MQ=255)

                         tAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGcc                                                                                                               <  1:7669318/140‑1 (MQ=255)

                          aaTCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCca                                                                                                              <  1:1023239/140‑1 (MQ=255)

                          aaTCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCca                                                                                                              <  2:1038965/140‑1 (MQ=255)

                          aaTCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCca                                                                                                              <  1:1305353/140‑1 (MQ=255)

                          aaTCAGCTGTAACTGATGACGCCACTGTCGAAAACTCAACACCGTCTCTTTTACTATCAGTCGGGCAAGAGTGAGTTCAATCATCGCAAAAAAGCCAGCCAATTGCCCCAA‑TG‑CACCCCACTCGACATGCCCTTTCGCca                                                                                                              <  2:5317085/140‑1 (MQ=255)

                            tCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCcatc                                                                                                            <  1:1381433/140‑1 (MQ=255)

                            tCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCcatc                                                                                                            <  1:10807089/140‑1 (MQ=255)

                            tCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCcatc                                                                                                            <  1:3201321/140‑1 (MQ=255)

                            tCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCcatc                                                                                                            <  1:9647010/140‑1 (MQ=255)

                              aGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCcatcat                                                                                                          <  2:4553767/140‑1 (MQ=255)

                                 tGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCttt                                                                                                                   >  2:8518714/1‑128 (MQ=255)

                                    aaCTGCTGACGCCACTGGCGAAAACTCAACCCCGACTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTACGCCATCATCTccac                                                                                                    >  2:4735305/1‑140 (MQ=255)

                                     aCTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTccacc                                                                                                   >  2:3665787/1‑140 (MQ=255)

                                        gctgACGCCACTGGCGAAAACTCAAACCCGTCTATATTACTATCAGTCTGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATAGCCCCAA‑TGCC‑CCCCACTAGACAGGCCCTTTCGCCATCATCTCCACAATc                                                                                                >  2:1765259/1‑140 (MQ=255)

                                          tgACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCCCCCTCgg                                                                                              >  1:6195294/1‑139 (MQ=255)

                                          tgACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGt                                                                                              >  1:6723441/1‑140 (MQ=255)

                                          tgACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGt                                                                                              >  1:1113935/1‑140 (MQ=255)

                                          tgACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGt                                                                                              >  2:8663336/1‑140 (MQ=255)

                                          agACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGt                                                                                              >  2:10090459/2‑140 (MQ=255)

                                           gACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTg                                                                                             <  2:9134388/140‑1 (MQ=255)

                                            aCGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGc                                                                                            <  1:8321060/140‑1 (MQ=255)

                                            aCGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGc                                                                                            <  2:9239483/140‑1 (MQ=255)

                                            aCGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGc                                                                                            <  2:5976120/140‑1 (MQ=255)

                                             cGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCg                                                                                           <  1:8142032/140‑1 (MQ=255)

                                             cGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCg                                                                                           >  2:5463381/1‑140 (MQ=255)

                                                            cTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATgaga                                                                            >  2:8737649/1‑140 (MQ=255)

                                                              cAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGagaag                                                                          <  2:2182912/140‑1 (MQ=255)

                                                               aaCCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCNAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGagaaga                                                                         >  1:5811278/1‑140 (MQ=255)

                                                                      tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGc                                                                  <  1:9052239/140‑1 (MQ=255)

                                                                      tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGc                                                                  <  1:6534512/140‑1 (MQ=255)

                                                                           tttACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTg                                                             >  2:1019779/1‑140 (MQ=255)

                                                                            ttACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGc                                                            <  2:6968887/140‑1 (MQ=255)

                                                                                 aTCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTATCGCCATCATCTCCACCATCGTGAGGATTTTAGGATGAGAAGAAAGGGGCAGGTGCAGCtg                                                       >  2:8077851/1‑140 (MQ=255)

                                                                                  tCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCCTCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgt                                                      >  2:9834964/1‑140 (MQ=255)

                                                                                  tCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgt                                                      >  1:9852458/1‑140 (MQ=255)

                                                                                  tCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgt                                                      >  2:6239811/1‑140 (MQ=255)

                                                                                    aGTCGGGCAAGATTGCGTTCACTCATCGCACAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTGTCGCCATCATCTCCACCATCGTGCGGATGTGAGGATGAGAAGAAACGGGCAGGTGCAGCtgttg                                                    >  2:7851608/1‑140 (MQ=255)

                                                                                    aGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttg                                                    >  2:6122755/1‑140 (MQ=255)

                                                                                    aGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttg                                                    >  2:4291336/1‑140 (MQ=255)

                                                                                     gTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAC‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttgt                                                   <  2:3975948/140‑1 (MQ=255)

                                                                                     gTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttgt                                                   <  2:4884938/140‑1 (MQ=255)

                                                                                      tCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttgtt                                                  >  1:2283537/1‑140 (MQ=255)

                                                                                      tCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttgtt                                                  >  2:3337767/1‑140 (MQ=255)

                                                                                         ggCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTtgtg                                               >  1:9980111/1‑140 (MQ=255)

                                                                                         ggCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTtgtg                                               <  2:5098679/140‑1 (MQ=255)

                                                                                         ggCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTtgtg                                               <  2:3097791/140‑1 (MQ=255)

                                                                                         ggCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTtgtg                                               <  1:1684613/140‑1 (MQ=255)

                                                                                          gCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTgg                                              >  1:7370463/1‑140 (MQ=255)

                                                                                             aGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGgctg                                           <  1:4998750/140‑1 (MQ=255)

                                                                                              gATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCCTCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGgctgc                                          <  2:3490327/140‑1 (MQ=255)

                                                                                              gATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGgctgc                                          >  2:9316317/1‑140 (MQ=255)

                                                                                               aTTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTg                                                             <  2:1847102/120‑1 (MQ=255)

                                                                                                ttGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGctgctg                                        <  2:1970031/140‑1 (MQ=255)

                                                                                                 tGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGa                                       <  1:10026795/140‑1 (MQ=255)

                                                                                                   cGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAgg                                     <  1:7191949/140‑1 (MQ=255)

                                                                                                   cGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAgg                                     >  1:2127942/1‑140 (MQ=255)

                                                                                                     ttCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGa                                   <  1:1487437/140‑1 (MQ=255)

                                                                                                     ttCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGa                                   <  1:5195361/140‑1 (MQ=255)

                                                                                                     ttCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGa                                   <  2:7503748/140‑1 (MQ=255)

                                                                                                     ttCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCAATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGa                                   <  2:3753476/140‑1 (MQ=255)

                                                                                                        aCTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGACGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGtt                                >  1:9196326/1‑140 (MQ=255)

                                                                                                        aCTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGtt                                >  1:3374251/1‑140 (MQ=255)

                                                                                                             tCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTtcatca                           >  2:7066301/1‑140 (MQ=255)

                                                                                                                cAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAAc                        <  1:4799357/140‑1 (MQ=255)

                                                                                                                     aaGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGAc                   <  1:8779920/140‑1 (MQ=255)

                                                                                                                        ccagccCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTg                >  1:5297931/1‑140 (MQ=255)

                                                                                                                        ccagccCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTg                >  1:7514884/1‑140 (MQ=255)

                                                                                                                        ccagccCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTg                >  1:6978244/1‑140 (MQ=255)

                                                                                                                           gccCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAAt             >  2:3817169/1‑140 (MQ=255)

                                                                                                                               aTTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAAt         >  1:1986006/1‑140 (MQ=255)

                                                                                                                                  gCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTg      <  2:2672011/140‑1 (MQ=255)

                                                                                                                                  gCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTg      <  1:10568081/140‑1 (MQ=255)

                                                                                                                                   ccccAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCCCCATCGTGAGGATTTTAGGTTGAGACGATACGTGCAGGTTCAGCTGTTGTTGGTTCTGCTGAGTGTGTTCTTCAATCAGGACCTGAATTAATCTGc     <  2:5686428/140‑1 (MQ=255)

                                                                                                                                   ccccAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGc     <  1:3440179/140‑1 (MQ=255)

                                                                                                                                   ccccAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGc     <  2:1109869/140‑1 (MQ=255)

                                                                                                                                   ccccAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGAGGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGc     <  1:10395369/140‑1 (MQ=255)

                                                                                                                                      cAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGCggg  >  1:2509887/1‑140 (MQ=255)

CCTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑C‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGCGGG  >  NZ_CP025268/1879726‑1879998

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`