| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 2,858,752 | +T | pseudogene (395/2078 nt) | flhA → | formate hydrogenlyase transcriptional activator FlhA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 2,858,748 | 1 | . | T | 97.2% | 1604.0 / 29.0 | 428 | pseudogene (391/2078 nt) | flhA | formate hydrogenlyase transcriptional activator FlhA |
| Reads supporting (aligned to +/- strand): ref base . (8/4); new base T (212/204); total (220/208) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.83e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 490 total aligned reads displayed.
ACGCAGCATTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑A‑TT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGCGTCGTTAACAATGTCG > NZ_CP025268/2858609‑2858882 | agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑A‑tt‑tt > 2:6974437/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑A‑tt‑tt > 2:10776856/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑A‑tt‑tt > 1:5004520/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑A‑tt‑tt > 2:7784718/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑A‑tt‑tt > 1:7759291/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑A‑tt‑tt > 1:6525137/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑A‑tt‑tt > 1:1444918/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑A‑tt‑tt > 1:5715702/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACGATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑A‑tt‑tt > 2:9573023/1‑140 (MQ=255) caTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑A‑tt‑tttg < 1:3614521/140‑3 (MQ=255) tttGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑A‑TT‑Ttggtgg > 1:2336454/1‑140 (MQ=255) ttGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑Ttggtgg < 1:3989511/140‑1 (MQ=255) tggTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATATTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑Ttggtgg < 2:9396609/138‑1 (MQ=255) tGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGc > 1:2491399/1‑140 (MQ=255) tCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTAGACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCtg < 1:5996860/140‑1 (MQ=255) tCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTAGACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCtg < 1:429217/140‑1 (MQ=255) cgcCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGa > 1:9249918/1‑140 (MQ=255) cgcCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGa > 1:1502429/1‑140 (MQ=255) cccTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAG‑ATTT‑TTGGTGGCTGTGAAt > 2:6573508/1‑140 (MQ=255) tGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTa < 1:852946/140‑1 (MQ=255) gATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTAt < 2:1426161/140‑1 (MQ=255) tACGCTGCAGTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTc < 1:9683499/140‑1 (MQ=255) tGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTAt > 2:1623744/1‑140 (MQ=255) tGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTAt > 1:3693602/1‑140 (MQ=255) tGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTAt > 1:8376864/1‑140 (MQ=255) tGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTAt > 1:1802631/1‑140 (MQ=255) tGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTAt > 2:6339059/1‑140 (MQ=255) tGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTAt > 2:9198976/1‑140 (MQ=255) tGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTAt > 2:4945933/1‑140 (MQ=255) tGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑A‑tt‑tttgg > 2:2323194/1‑115 (MQ=255) tGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATGTGGTCACTATTGCCTGATGCCACGGGCGGCGGCAGGGCCTCT‑TT‑TTGGTGGCTGTGCATTTCTTCGTTAt > 2:1265970/1‑140 (MQ=255) cATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGa > 1:6232655/1‑140 (MQ=255) cATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGa < 1:6839968/140‑1 (MQ=255) gCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGAt < 1:2011029/140‑1 (MQ=255) gCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGAt < 2:2899992/140‑1 (MQ=255) aCGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGcccc > 1:8160256/1‑140 (MQ=255) gaagaaTTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTg < 1:955123/140‑1 (MQ=255) agaaTTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGa < 2:8613494/140‑1 (MQ=255) gaaTTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAg > 2:3473705/1‑140 (MQ=255) ttttGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGa > 2:2478867/1‑140 (MQ=255) ttGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGaaa < 2:8483891/140‑1 (MQ=255) aaCCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGt > 2:4362957/1‑140 (MQ=255) cTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCa < 2:5919355/140‑1 (MQ=255) gCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATc > 2:6158755/1‑140 (MQ=255) ccGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCg < 1:2241785/140‑1 (MQ=255) cTGGACGCCTGTTGGCTAAACCCCAAATGTGGTCACTAATGCCCGATGCCACGGGCGGCGGAATGGCAA‑ATTT‑TTGGTGGCTGCGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAAACGTCTGCa < 2:2754610/140‑1 (MQ=255) cTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCa < 1:10016726/140‑1 (MQ=255) cTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCa < 2:8821173/140‑1 (MQ=255) cTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCa < 1:8838503/140‑1 (MQ=255) cTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCa < 2:189547/140‑1 (MQ=255) gACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAAc > 2:677434/1‑140 (MQ=255) aGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTa > 2:1352738/1‑140 (MQ=255) gTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACg < 2:1767352/140‑1 (MQ=255) ggCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAACAAGAGTGCAATCGTCTGCAAACATTTACGCAg > 2:8234226/1‑140 (MQ=255) taCCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGt > 1:7314071/1‑140 (MQ=255) taCCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGt > 1:4115508/1‑140 (MQ=255) taCCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGt > 2:10062648/1‑140 (MQ=255) taCCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGt > 1:7400651/1‑140 (MQ=255) taCCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGt > 1:8771278/1‑140 (MQ=255) aCCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGtt < 2:3693602/140‑1 (MQ=255) cccAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGttt > 1:294940/1‑140 (MQ=255) cccAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGttt > 1:4465118/1‑140 (MQ=255) aagtaggTCACAATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑A‑TTAGTGGTGGCGCAGAATGAAAAAGTAATGAAGATCGCCCCTTGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTgtc > 2:5594266/6‑140 (MQ=255) tttGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTgtcgt < 2:10136188/140‑1 (MQ=255) ggTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCAc < 1:8651727/140‑1 (MQ=255) ggTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCAc < 2:4830393/140‑1 (MQ=255) ggTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCAc < 2:3811859/140‑1 (MQ=255) ggTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCAc < 2:9005305/140‑1 (MQ=255) ggTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCAc > 1:5445299/1‑140 (MQ=255) tCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCg < 1:9145300/140‑1 (MQ=255) cTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAAc < 1:1216412/140‑1 (MQ=255) tATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACa > 1:3309118/1‑140 (MQ=255) ccTGATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATcc > 1:10135665/1‑140 (MQ=255) gATGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCaga > 1:6137984/1‑140 (MQ=255) tGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGc > 1:1626347/1‑140 (MQ=255) tGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGc > 2:3156821/1‑140 (MQ=255) tGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGc > 1:8016576/1‑140 (MQ=255) tGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGc > 1:4850382/1‑140 (MQ=255) tGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGc > 2:8118546/1‑140 (MQ=255) tGCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGc > 1:5245115/1‑140 (MQ=255) gCCACTGGCGGCGGAAGTGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTAAGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGcc < 2:6024427/140‑1 (MQ=255) gCCACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGcc < 2:5754990/140‑1 (MQ=255) cACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCcgc < 1:3156472/140‑1 (MQ=255) cACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCcgc < 1:10776857/140‑1 (MQ=255) cACTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCcgc < 1:980004/140‑1 (MQ=255) aCTGGCGGCGGAAGGGCGT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTAGGTCGTTCGCCGGTGGAGGGAAAAAGAGGTCCATCGTCTGCAAACAGGTACGCAGATCGTTTCTGTCGTCAGCGACCAAATCGAGAGCcgcg > 2:541288/1‑140 (MQ=255) aCTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCcgcg > 1:6992390/1‑140 (MQ=255) aCTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCcgcg < 1:1940750/140‑1 (MQ=255) aCTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCcgcg > 2:7367276/1‑140 (MQ=255) aCTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCcgcg > 1:10496501/1‑140 (MQ=255) cTGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACAATTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGcgt < 2:7104993/140‑1 (MQ=255) tGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGcgtc < 1:1062172/140‑1 (MQ=255) tGGCGGCGGAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGcgtc < 2:4724307/140‑1 (MQ=255) cggcggAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGCGTCGtt > 1:5899470/1‑140 (MQ=255) ggcggAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCACACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGcgtcgtga > 2:4226296/1‑138 (MQ=255) gcggAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGCGTCGTTaa > 2:10316327/1‑140 (MQ=255) gcggAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGCGTCGTTaa < 2:9871742/140‑1 (MQ=255) cggAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGAAATGACGATCGCCCCTGGAGCGAAAAAGAGTACAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGCGTCGTTAAc < 2:4007998/140‑1 (MQ=255) gAAGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGCGTCGTTAACaa > 1:4193345/1‑140 (MQ=255) aGGGCAT‑ATTT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGCGTCGTTAACAATg < 2:5196338/140‑1 (MQ=255) | ACGCAGCATTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑A‑TT‑TTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGCGTCGTTAACAATGTCG > NZ_CP025268/2858609‑2858882 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |