BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	3,851,714	+C	pseudogene (345/1502 nt)	uhpB ←	signal transduction histidine‑protein kinase/phosphatase UhpB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	3,851,710	1	.	C	98.4%	1682.3 / 16.7	490	pseudogene (349/1502 nt)	uhpB	signal transduction histidine‑protein kinase/phosphatase UhpB
Reads supporting (aligned to +/- strand): ref base . (4/4); new base C (241/240); total (245/245)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.20e-01

Only 100 of 583 total aligned reads displayed.

GGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑G‑C‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGT  >  NZ_CP025268/3851571‑3851844

ggCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAGCTCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAAcgcc‑g                                                                                                                                          <  2:4230776/140‑1 (MQ=255)

ggCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAAcgcc‑g                                                                                                                                          <  2:3776751/140‑1 (MQ=255)

ggCGAGATAGGGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGTGCAGCGACTGCAACAAAGCCGCCGCCGTTAAcgcc‑g                                                                                                                                          <  2:8392701/140‑1 (MQ=255)

ggCCAGAAAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAACGTCAGCAACAGCGCATTCCACGACCCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAAcgcc‑g                                                                                                                                          <  1:10697565/140‑1 (MQ=255)

  cGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACgcc‑g‑c‑c                                                                                                                                      <  2:5576901/140‑1 (MQ=255)

   gagaTAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAGGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGGTAACGCC‑G‑c‑cc                                                                                                                                     >  1:7901319/1‑140 (MQ=255)

    agaTCGTGCCAGAACCCCAGACATATCGGGGCCAGCGTCAGGCCGCCAGATAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGTGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑G‑c‑ccc                                                                                                                                    <  2:7961157/140‑1 (MQ=255)

    agaTAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑G‑c‑ccc                                                                                                                                    <  2:2213068/140‑1 (MQ=255)

     gaTAGTGCCATAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTATCGTCAGCAACCGCGCAGTCCACGACTCTTTGCCGGGCCCAAGCCAGGGCAGCGACGGCAACAACGCCGCCGCCGTTAACGCC‑G‑c‑cccc                                                                                                                                   <  2:860642/140‑2 (MQ=255)

      aTAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑G‑c‑cccct                                                                                                                                  >  1:6364947/1‑138 (MQ=255)

      aTAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑G‑c‑cccct                                                                                                                                  >  2:4034745/1‑138 (MQ=255)

        aGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑G‑c‑cccctgt                                                                                                                                <  1:6995063/140‑5 (MQ=255)

        aGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑G‑c‑cccctgt                                                                                                                                <  1:10493195/140‑5 (MQ=255)

             cAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAg                                                                                                                            <  2:8145261/140‑1 (MQ=255)

               gAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCa                                                                                                                          <  1:9839074/140‑1 (MQ=255)

               gAACACCAGACAGATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCa                                                                                                                          <  2:1390451/140‑1 (MQ=255)

                aaCACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCaa                                                                                                                         >  2:3873231/1‑140 (MQ=255)

                aaCACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCaa                                                                                                                         <  1:7152473/140‑1 (MQ=255)

                     cAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTgc                                                                                                                    >  2:2157419/1‑140 (MQ=255)

                      aGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTgcg                                                                                                                   <  1:8798289/140‑1 (MQ=255)

                          atatCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAg                                                                                                               >  1:4144465/1‑140 (MQ=255)

                            atCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTc                                                                                                             >  2:10407403/1‑140 (MQ=255)

                             tCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCa                                                                                                            >  1:6716519/1‑140 (MQ=255)

                               gtggCCAGCGTCAGGCCGCCAGTTAACGACACCAACAGCGAATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGGAACCGCAAGGTGCGCCAGTCACg                                                                                                          <  2:5340776/138‑1 (MQ=255)

                               ggggCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACg                                                                                                          <  2:1848431/140‑1 (MQ=255)

                               cgggCCAGCGACAGCCCGCCAGTTAAAGTCACCAACAGCGCATACCACGACTCTTTGCCGTGCCAAAGCCACCGCACCGACTGCAACAACGCCCCCGCCGATAACGCC‑GCC‑CCCGGTAACAGCAAGGTGCGCCAGTCACg                                                                                                          <  2:5024392/139‑1 (MQ=255)

                                  gCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTg                                                                                                       >  1:2858696/1‑140 (MQ=255)

                                      gCGTCAGGCCGCCAGTTAAAGTCAGCAACAACGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATgg                                                                                                   >  1:6024771/1‑140 (MQ=255)

                                       cGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAg                                                                                                                        >  2:2704098/1‑118 (MQ=255)

                                       cGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAg                                                                                                                        <  1:2704098/118‑1 (MQ=255)

                                       cGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGTTGGc                                                                                                  >  2:9668967/1‑140 (MQ=255)

                                       cGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGc                                                                                                  >  1:5727364/1‑140 (MQ=255)

                                       cGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGc                                                                                                  >  1:2588923/1‑140 (MQ=255)

                                          cAGGCCGCCAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGAt                                                                                               <  2:6797626/140‑1 (MQ=255)

                                             gccgccAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAgc                                                                                            >  2:3329951/1‑140 (MQ=255)

                                             gccgccAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAgc                                                                                            >  1:5659317/1‑140 (MQ=255)

                                                 ccAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCga                                                                                        >  1:865852/1‑140 (MQ=255)

                                                 ccAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCga                                                                                        >  1:9749238/1‑140 (MQ=255)

                                                 ccAGTTAAAGTCAGCAACAGCGCAGTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCga                                                                                        <  2:1125033/140‑1 (MQ=255)

                                                  cAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCgag                                                                                       <  2:452359/140‑1 (MQ=255)

                                                    gTTAAATTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGAt                                                                                     <  1:7381289/140‑1 (MQ=255)

                                                    gTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGAt                                                                                     <  2:6358838/140‑1 (MQ=255)

                                                     atAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATc                                                                                    <  2:9047117/139‑1 (MQ=255)

                                                        aaGTCATCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAgc                                                                                 <  1:5323960/140‑1 (MQ=255)

                                                        aaGTCAGCCACAGCGCATTCCACGACTCTTTGCAGTGCCAAAGCCAGGGCAGAGACTGCATCAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGACAGGTTCGCCAGTCACGCTGATTGCGATAGCTCGAGATCAgc                                                                                 <  2:6522404/140‑1 (MQ=255)

                                                           tCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCt                                                                              <  1:10830856/140‑1 (MQ=255)

                                                           tCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCt                                                                              <  2:6113674/140‑1 (MQ=255)

                                                             aGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTAc                                                                            <  1:6529188/140‑1 (MQ=255)

                                                             aGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTAc                                                                            >  1:1581809/1‑140 (MQ=255)

                                                              gCAACAGCGCATTCCCCGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACg                                                                           <  2:2003401/140‑1 (MQ=255)

                                                              gCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACg                                                                           >  2:7821552/1‑140 (MQ=255)

                                                               cAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTg                                                                                                                     <  1:2289115/97‑1 (MQ=255)

                                                                  cAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCa                                                                       <  1:8238958/140‑1 (MQ=255)

                                                                   aGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAg                                                                      >  1:7734731/1‑140 (MQ=255)

                                                                    gcgcATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCACGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGt                                                                     <  2:3010450/140‑1 (MQ=255)

                                                                    gcgcATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGt                                                                     <  1:6956718/140‑1 (MQ=255)

                                                                    gcgcATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGt                                                                     >  1:4617177/1‑140 (MQ=255)

                                                                    gcgcATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGt                                                                     <  1:4192493/140‑1 (MQ=255)

                                                                       cATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTAc                                                                            >  2:9554768/1‑130 (MQ=255)

                                                                       cATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTAc                                                                            <  1:9554769/130‑1 (MQ=255)

                                                                       cATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAAc                                                                  >  1:389609/1‑140 (MQ=255)

                                                                         ttCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGt                                                                <  1:9033130/140‑1 (MQ=255)

                                                                         ttCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGt                                                                <  2:2850426/140‑1 (MQ=255)

                                                                           ccACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCa                                                              <  2:10746358/140‑1 (MQ=255)

                                                                              cGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTa                                                           <  2:4854361/140‑1 (MQ=255)

                                                                              cGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GAC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTa                                                           <  2:5160878/140‑1 (MQ=255)

                                                                               gACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTaa                                                          >  2:7520013/1‑140 (MQ=255)

                                                                                    tttGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGt                                                                     <  2:5662947/124‑1 (MQ=255)

                                                                                    tttGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTAc                                                     >  2:5912515/1‑140 (MQ=255)

                                                                                    tttGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTAc                                                     >  1:6772258/1‑140 (MQ=255)

                                                                                    tttGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTAc                                                     >  2:8480808/1‑140 (MQ=255)

                                                                                    tttGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTAc                                                     >  1:3248666/1‑140 (MQ=255)

                                                                                    tttGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTAc                                                     >  1:10007511/1‑140 (MQ=255)

                                                                                     ttGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTAcc                                                    <  2:9827881/140‑1 (MQ=255)

                                                                                      tGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCg                                                   >  1:1289262/1‑140 (MQ=255)

                                                                                           tGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGatcat                                              >  1:8032813/1‑140 (MQ=255)

                                                                                              cAAAGCCAGGGCAGCGACCGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCaa                                           <  2:1533886/140‑1 (MQ=255)

                                                                                                  gCCAGAGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAAc                                       >  2:1033699/1‑140 (MQ=255)

                                                                                                   ccAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAATCTACCGATCATCAATAACg                                      <  2:10107906/140‑1 (MQ=255)

                                                                                                   ccAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAACg                                      <  1:3523240/140‑1 (MQ=255)

                                                                                                      gggCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAACGGaa                                   >  1:5070960/1‑140 (MQ=255)

                                                                                                      gggCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAACGGaa                                   >  1:2044308/1‑140 (MQ=255)

                                                                                                       ggCAGCGACTTCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAACGGaaa                                  <  2:10203277/140‑1 (MQ=255)

                                                                                                       ggCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACCACCGATCATCAATAACGGaaa                                  <  2:5789045/140‑1 (MQ=255)

                                                                                                       ggCAGCGACAGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACGACCGATCATCAATAACGGaaa                                  <  2:1750387/140‑1 (MQ=255)

                                                                                                             gACTGCAACAACGCCGCCGCCGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAACGGAAAATGGGt                            >  1:10208838/1‑140 (MQ=255)

                                                                                                                        cgccgccgcCGTTAACGCC‑G‑CAACCTGAAACAGCAACGAGAGACAGTCACGCTGATCGCGATAGCGCGAGATAAGCGCTACGTGCAGAAACGACAGTAAACTACCGATCATCAGAAACGGAAAATTGGATAAcccgacag                 >  2:7012964/1‑138 (MQ=255)

                                                                                                                         gccgccgccGTTAACGCCTC‑C‑CCCTGTAACAGCATGGTGCGCCAGTCACGCTGATGGCGATAGCGCGTGATCAGCGCTACGGGCAGTATCGTCAGTATACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGc                <  1:1464071/140‑1 (MQ=255)

                                                                                                                         gccgccgccGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGc                <  1:9294933/140‑1 (MQ=255)

                                                                                                                         gccgccgccGTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGc                <  2:9117921/140‑1 (MQ=255)

                                                                                                                          ccgccgccgTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGcc               >  2:4402511/1‑140 (MQ=255)

                                                                                                                          ccgccgccgTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGcc               >  2:3595723/1‑140 (MQ=255)

                                                                                                                             ccgccgTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGc            >  1:5525210/1‑140 (MQ=255)

                                                                                                                              cgccgTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCg           <  1:243410/140‑1 (MQ=255)

                                                                                                                              cgccgTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCg           >  2:8896594/1‑140 (MQ=255)

                                                                                                                              cgccgTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCg           <  2:9450249/140‑1 (MQ=255)

                                                                                                                                 cgTTAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTa        <  2:2515788/140‑1 (MQ=255)

                                                                                                                                   ttAACGCC‑GCC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGc      >  1:4938093/1‑140 (MQ=255)

                                                                                                                                       cgcc‑gcC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGt  <  1:7507539/140‑1 (MQ=255)

                                                                                                                                       cgcc‑gcC‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGt  >  2:4636854/1‑140 (MQ=255)

GGCGAGATAGTGCCAGAACACCAGACATATCGGGGCCAGCGTCAGGCCGCCAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCC‑G‑C‑CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGT  >  NZ_CP025268/3851571‑3851844

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`