New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP025268 = 780065431 (0.700)28 (0.060) 18/192 7.9 10.6% intergenic (+98/‑52) CXP41_RS04095/CXP41_RS04100 tRNA‑Lys/tRNA‑Val
?NZ_CP025268 780858 = 160 (0.360)intergenic (+1/‑276) CXP41_RS04120/nadA RtT sRNA/quinolinate synthase NadA
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 365 total aligned reads displayed.

AGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGACGCATCCTGC  >  NZ_CP025268/780721‑780997
                                                                                                                                           |                                                                                                                                           
  gcgcTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTa                                                                                                                                         >  2:4581722/1‑140 (MQ=32)
    gcTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTGGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTaaa                                                                                                                                       >  1:10848616/1‑140 (MQ=17)
     cTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAATGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTaaaa                                                                                                                                      >  1:2151342/1‑140 (MQ=17)
     cTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTaaaa                                                                                                                                      >  1:8665719/1‑140 (MQ=32)
     cTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTaaaa                                                                                                                                      >  1:1546516/1‑140 (MQ=32)
       tttttGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTGGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTaaaaaa                                                                                                                                    >  2:2104774/1‑140 (MQ=17)
           tGCTATTTGCTATACTCAATGTTTCGAACCTGCAGCTGGTTTGAGTTGTGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAgcgc                                                                                                                                <  1:6664116/140‑1 (MQ=11)
           tGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAgcgc                                                                                                                                <  2:7151702/140‑1 (MQ=31)
           tGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAgcgc                                                                                                                                <  2:1598815/140‑1 (MQ=31)
                                    gAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCa                                                                                                       >  2:5573815/1‑140 (MQ=32)
                                          gcagcaGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATc                                                                                                 <  2:623055/140‑1 (MQ=37)
                                          gcagcaGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATc                                                                                                 >  2:3042752/1‑140 (MQ=37)
                                           cagcagGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATcc                                                                                                >  1:9147149/1‑140 (MQ=38)
                                                  tttGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAAtgt                                                                                         >  2:10386293/1‑138 (MQ=255)
                                                    tgatttgagCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCa                                                                                       <  1:5566131/140‑1 (MQ=255)
                                                    tgacttgagCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCa                                                                                       <  2:7829103/140‑1 (MQ=255)
                                                           agCGCAGCGACACAACGTAGTCGCTCGTGGAGTCGTCCCGCAGTGGGTT‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTa                                                                                <  2:1335428/140‑1 (MQ=17)
                                                           agCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGTCCCTAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTACAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTa                                                                                <  2:1005956/140‑1 (MQ=255)
                                                           agCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGACG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTa                                                                                <  1:1355496/140‑1 (MQ=255)
                                                           agCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGTGTCATCCTGCACGACCCACCAATGTAAAATAGCGCCCTAAAGGCGCTTGTTTGCTATTCAGGCATCCTCAATTTCACTGTGTa                                                                                >  2:581358/1‑140 (MQ=255)
                                                           agCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTa                                                                                >  1:2935478/1‑140 (MQ=255)
                                                           agCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTa                                                                                >  1:2328273/1‑140 (MQ=255)
                                                             cgcAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTaaa                                                                              >  1:3626014/1‑140 (MQ=255)
                                                              gcAGCTAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAAc                                                                             <  1:748548/140‑1 (MQ=255)
                                                                aGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCt                                                                           >  1:4645708/1‑140 (MQ=255)
                                                                   gAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCtgat                                                                        <  2:251853/140‑1 (MQ=255)
                                                                      acaacGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGAc                                                                     <  1:4380374/140‑1 (MQ=255)
                                                                          cGGAGCCGCTCGCGGCGACGGCCCGACGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAACGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCg                                                                 <  1:8296170/140‑1 (MQ=255)
                                                                            gAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTc                                                               >  2:511049/1‑140 (MQ=255)
                                                                            gAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTc                                                               <  2:3345038/140‑1 (MQ=255)
                                                                               ccGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACAt                                                                   <  1:600387/133‑1 (MQ=255)
                                                                               ccGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACAt                                                                   >  2:601930/1‑133 (MQ=255)
                                                                               ccGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCaga                                                            >  2:9680285/1‑140 (MQ=255)
                                                                                  cTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAACGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCt                                                         <  1:1960334/140‑1 (MQ=255)
                                                                                  cTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCt                                                         <  1:7880824/140‑1 (MQ=255)
                                                                                   tCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCtt                                                        <  1:7567584/140‑1 (MQ=255)
                                                                                   cgtccgcgACGGCCCGTCGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCtt                                                        <  2:5949556/135‑1 (MQ=255)
                                                                                    ctcggcgCCGCCCCGACGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTa                                                       <  2:9028763/138‑1 (MQ=255)
                                                                                    ccccgctaCGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAATGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTa                                                       <  1:8111016/133‑1 (MQ=255)
                                                                                           aCGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTgca                                                <  1:2788655/140‑1 (MQ=255)
                                                                                           aCGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTgca                                                >  2:7037889/1‑140 (MQ=255)
                                                                                             ggCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTgcaag                                              <  1:9767313/140‑1 (MQ=255)
                                                                                              tcccGCAGGGGGCG‑CGAAG‑CGAGTGATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTgcaagc                                             <  2:9792887/139‑1 (MQ=255)
                                                                                              gCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTgcaagc                                             <  1:9680286/140‑1 (MQ=255)
                                                                                               cccGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTgcaag                                              >  1:10287411/1‑140 (MQ=255)
                                                                                               cccGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTgcaagca                                            >  1:6767875/1‑140 (MQ=255)
                                                                                                ccGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTgcaagcaa                                           <  2:4527810/140‑1 (MQ=255)
                                                                                                ccGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTgcaagcaa                                           <  2:423929/140‑1 (MQ=255)
                                                                                                      ggCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTAt                                     <  1:10589899/140‑1 (MQ=255)
                                                                                                        cgag‑cgaAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTa                                                       <  1:1781739/120‑1 (MQ=255)
                                                                                                        cgag‑cgaAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTa                                                       >  2:1781739/1‑120 (MQ=255)
                                                                                                        cgag‑cgaAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGt                                   >  1:3331534/1‑140 (MQ=255)
                                                                                                          ag‑cgaag‑cgaGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCg                                 >  2:1165596/1‑140 (MQ=255)
                                                                                                              gaag‑cgaGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTCAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTNAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTg                              <  1:10052211/140‑1 (MQ=255)
                                                                                                              gaag‑cgaGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTg                              <  2:1460984/140‑1 (MQ=255)
                                                                                                                    gaGTCATCCTGCACTACCCACCAATGTAAAAAAGCGCCCTACAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAAtt                         <  2:7237419/140‑1 (MQ=255)
                                                                                                                             tGCACGACCCACCACTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCCCTATGTAAACCTGATGACATCGTCAGAGCTAACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTaaa                <  2:8710763/140‑1 (MQ=255)
                                                                                                                             tGCACGACCCACCAATGTAAAAAAGCGCCCTACAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTaaa                <  2:6767763/140‑1 (MQ=255)
                                                                                                                             tGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTaaa                <  2:7933786/140‑1 (MQ=255)
                                                                                                                               cACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTc                                                               <  2:570403/91‑1 (MQ=255)
                                                                                                                               cACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTc                                                               >  1:570403/1‑91 (MQ=255)
                                                                                                                               cACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTa                                                       >  1:4265838/1‑99 (MQ=255)
                                                                                                                               cACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAAt              >  2:858321/1‑140 (MQ=255)
                                                                                                                               cACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAAt              >  2:9063006/1‑140 (MQ=255)
                                                                                                                                aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATg             >  2:8302376/1‑140 (MQ=255)
                                                                                                                                aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATg             >  1:10401200/1‑140 (MQ=255)
                                                                                                                                  gACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGAc           <  1:6397239/140‑1 (MQ=255)
                                                                                                                                  gACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGAc           <  1:3571933/140‑1 (MQ=255)
                                                                                                                                  gACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGAc           <  1:9521366/140‑1 (MQ=255)
                                                                                                                                  gACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGAc           <  2:8642634/140‑1 (MQ=255)
                                                                                                                                  gACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGAc           <  2:8412723/140‑1 (MQ=255)
                                                                                                                                  gACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGAc           <  1:6112550/140‑1 (MQ=255)
                                                                                                                                    cccACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTTCTATTCAGGCATCCACAAATTCACGTTGTAAACCTGATTACAACCTAAGAGCATACAGTGCAACCAACTCTAATTCGGTGGAAATAGGCGTAAAATGACGc         >  1:1222887/1‑140 (MQ=25)
                                                                                                                                    cccACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTa                                                       >  1:4497154/1‑94 (MQ=255)
                                                                                                                                    cccACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACtgt                                                   >  2:4775931/1‑98 (MQ=255)
                                                                                                                                    cccACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACtgt                                                   <  1:4776038/98‑1 (MQ=255)
                                                                                                                                    cccACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTgcaagcaa                                           >  2:5753666/1‑106 (MQ=255)
                                                                                                                                    cccACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTgcaagcaa                                           <  1:5753666/106‑1 (MQ=255)
                                                                                                                                    cccACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTgcaagcaa                                           >  1:5338767/1‑106 (MQ=255)
                                                                                                                                    cccACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTgcaag                                              <  1:8065229/103‑1 (MQ=255)
                                                                                                                                    cccACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTgcaag                                              >  2:8065228/1‑103 (MQ=255)
                                                                                                                                    cccACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTgcaag                                              >  2:10697000/1‑103 (MQ=255)
                                                                                                                                    cccACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTgcaag                                              >  2:5343261/1‑103 (MQ=255)
                                                                                                                                    cccACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGt                                   <  1:7332018/114‑1 (MQ=255)
                                                                                                                                    cccACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGACGc         >  2:3701698/1‑140 (MQ=255)
                                                                                                                                    cccACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGACGc         >  1:4922423/1‑140 (MQ=255)
                                                                                                                                    cccACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGACGc         >  2:7597321/1‑140 (MQ=255)
                                                                                                                                    cccACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGACGc         >  1:5286369/1‑140 (MQ=255)
                                                                                                                                     ccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTa                                                       >  1:10134272/1‑93 (MQ=255)
                                                                                                                                     ccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGACGCa        <  2:4345970/140‑1 (MQ=255)
                                                                                                                                     ccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGACGCa        <  1:6869463/140‑1 (MQ=255)
                                                                                                                                      caccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGACGCAt       >  2:10601651/1‑140 (MQ=255)
                                                                                                                                       accaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTa                                                       >  2:2425985/1‑91 (MQ=255)
                                                                                                                                         caATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGACGCATCCt    <  2:4005711/140‑1 (MQ=255)
                                                                                                                                          caTGTCACAAAGCGCCCTACAGGCGCATTTTTGCGATTCAGGCATCCTCACTTACACTTTGTACACCTGAGGCCATCGTCAGAGCTTACTGTGCAAGCAACTCGATGTCGGTGGACTTAGGCGTAAAAGGACGCAACCTg   <  2:9132871/139‑1 (MQ=255)
                                                                                                                                          aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGACGCATCCTg   <  1:8548732/140‑1 (MQ=255)
                                                                                                                                          aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGACGCATCCTg   <  1:9009082/140‑1 (MQ=255)
                                                                                                                                          aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGACGCATCCTg   <  2:9380759/140‑1 (MQ=255)
                                                                                                                                          aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGACGCATCCTg   <  1:2496560/140‑1 (MQ=255)
                                                                                                                                           aTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGACGCATCCTGc  <  2:6767983/140‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                           
AGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGACGCATCCTGC  >  NZ_CP025268/780721‑780997

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.