Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0252682,233,2250TA27.0% 209.7 / 36.1 129intergenic (+125/+248)yohP/dusCsmall membrane protein YohP/tRNA dihydrouridine(16) synthase DusC
Reads supporting (aligned to +/- strand):  ref base T (44/48);  new base A (34/0);  total (80/49)
Fisher's exact test for biased strand distribution p-value = 2.94e-09
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 130 total aligned reads displayed.

AAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTG  >  NZ_CP025268/2233086‑2233363
                                                                                                                                            |                                                                                                                                          
aaGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAt                                                                                                                                            <  1:5180164/140‑1 (MQ=255)
     gatATTATAAAATTAATTAAGGTCATCAGGTCCGCAAATAACGAGAATATGTCAGTCTCTCATCCTGTTGCGCTCCGGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATcgccg                                                                                                                                       <  2:4427893/140‑1 (MQ=38)
       tatTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATcgccgcc                                                                                                                                     >  2:1530031/1‑140 (MQ=255)
       tatTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATcgccgcc                                                                                                                                     <  2:1215356/140‑1 (MQ=255)
        atTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATcgccgccg                                                                                                                                    >  1:8226112/1‑140 (MQ=255)
        atTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATcgccgccg                                                                                                                                    <  2:6266380/140‑1 (MQ=255)
          tttAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCgccgccgcc                                                                                                                                  <  2:7446988/140‑1 (MQ=255)
            tAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGcccc                                                                                                                                >  2:8019167/1‑140 (MQ=255)
                         ggTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAAACACGGGCGCACGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCggg                                                                                                                   <  1:3928286/139‑1 (MQ=255)
                             atcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGGCGGGGGGGGGCCAA‑AGCCCCCCCCCCCCGCAcccccccgcaca                                                                                                               >  1:8475172/1‑133 (MQ=37)
                             atcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCCAAAGCCCCCCCCCCCAGCACCCCCCGGctct                                                                                                               >  1:9913442/1‑140 (MQ=37)
                              tccggTCCGAAAATAACGAGAATCTTTCCGGCTCTCATCCTGTTGCGCTCCTGTCATGTGCAGTGCTTCCTAGTATCACTGGCGCGAGGAGCGC‑GCAGGGGGCGGGCCCTCGCCGCCGCCCCCGGCACCCCCGGGCGCTg                                                                                                              >  2:3678740/4‑140 (MQ=21)
                              tcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGGGGGGGGGGGCAAAAGCCCCCCCCCCCCCGACCCCCCGGcgcag                                                                                                              >  1:597375/1‑136 (MQ=255)
                                  gTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGGGGCCAAAAGCCGCCGCCCCCAGCACCCCCCGGCGCAGGCGa                                                                                                          >  2:1136370/1‑140 (MQ=25)
                                  gTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAACGCCGCCGCCCCCAGCACCCCCCGGCGCTGGCGa                                                                                                          >  1:4583319/1‑140 (MQ=255)
                                     cGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACa                                                                                                       >  2:9529544/1‑140 (MQ=255)
                                     cGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAACGCCGCCGCCCCCAGCACCCCCCGGCGCTGGCGAACa                                                                                                       >  2:3706139/1‑140 (MQ=255)
                                       aaaaTAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACaaa                                                                                                     >  2:8172508/1‑140 (MQ=255)
                                            aaCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGCGGGGGCGGGCAAAAGCCGCCCCCCCCCGCACCCCCCGGCGCTGGCGCACAAAAAcgc                                                                                                >  1:7082540/1‑140 (MQ=25)
                                            aaCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATcgc                                                                                                >  2:7424523/1‑140 (MQ=255)
                                            aaCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATagc                                                                                                >  2:10607357/1‑140 (MQ=255)
                                             aCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATcgcc                                                                                               <  2:4020717/140‑1 (MQ=255)
                                             aCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAACGCCGCCGCCCCCAGCACCCCCCGGCTCAGGCGAACAAAATagcc                                                                                               >  2:5620300/1‑140 (MQ=21)
                                                    tatTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGCGGCCCAAAGCCCCCCCCCCCACCACCCCCCGGCTCTGGCGAACCAAATAGCCGCAgcgc                                                                                        >  1:8916100/1‑140 (MQ=21)
                                                            tctctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCCCCGCCCCCAGCACCCCCGGGCTCAGGCGAACAAAATCGCCGCAGCGCGGTGccca                                                                                >  2:8803646/1‑139 (MQ=255)
                                                                tcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGCGGCCCAAAACCCCCCCCCCCACCACCCCCCGGCTCAGGCGAAAAAAAAAACCCCAGCGCGGTGCCCACGGc                                                                            >  1:10845147/1‑140 (MQ=16)
                                                                 cATCCTGTTGCGCTCCTGTCATGTGCATTGCTGCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCCATCGGCGCCGCCCCCAGCACCCACGGGCTCTGGCGTACCAAATCGGCGCTGCGGGGGGGCCTggggg                                                                           >  2:9123069/1‑138 (MQ=17)
                                                                 cATCCTGTGGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGCGGCCAATCGCAGCCGCCCCCTGCACCCCCGGGCTCTGGCGAAACAACTCGCCGCTGCGCGGTGCCCTCGGCt                                                                           >  2:6569557/1‑140 (MQ=18)
                                                                   cccTGTTGCGCTCCTGTCAATTTCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGAACCCCCGGGCTATGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTa                                                                         <  2:10500733/139‑1 (MQ=18)
                                                                        ttGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGATGGGGGCGCCAAAACCCCCCCCCCCCACCCCCCCCCCGCGCAGGCGTACAAAAAAGCCGCGGCGCGGGGGCCACGGCATATacca                                                                    >  2:103227/1‑139 (MQ=255)
                                                                        ttGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGGGGCCAAAACCCCCCCCCCCCAGCAACCCCCGGCACAGGCGAACAAAAACCCCCCGGCGCCGTGGCCACCGCGTATacca                                                                    >  1:4723040/1‑139 (MQ=12)
                                                                        ttGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATAGCCGCCGCCCCCAGCACCCCCCCGCTCTGGCGAACAAAATAGCCGCAGCGCGGTGCCCACGGCGTATccca                                                                    >  2:6785481/1‑139 (MQ=18)
                                                                        ttGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAAAGCCGCCCCCCCCAGCACCCCCCGGCGCAGGCGAACAAAAACGCCCCAGCGCGGTGCCCACCGCTTATccca                                                                    >  1:9926338/1‑139 (MQ=18)
                                                                        ttGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAAACCCCCCCCCCCCAGCACCCCCCGGCACAGGCGAACAAAAAAGCCCCAGCGCGGTGCCCACGGCGTATacca                                                                    >  2:1156827/1‑139 (MQ=18)
                                                                          gcgcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCACCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAACCCtga                                                                  >  2:9382461/1‑138 (MQ=255)
                                                                          gcgcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATAGCCGCCGCCCCCAGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCGTATCCCATa                                                                  >  2:9068817/1‑140 (MQ=255)
                                                                           cgcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTAc                                                                 <  1:5393948/140‑1 (MQ=255)
                                                                            gcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGCCGCCACACCCCCCCGCCCCCAGCACCCCCCGGCCCAGGCGAACAAAAAACCCGCGGCGCGGGGCCCAAGGCATATACCATaag                                                                >  2:5285461/1‑138 (MQ=12)
                                                                             cTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCATGGGGCGGCCCAACGCCCCCGCCCCCAGCACCCCCCGGCACAGTCGAACAAAATACCCCCGGCGCGGTGCCCACCGCGTATcccgaaccg                                                               >  2:291913/1‑134 (MQ=16)
                                                                             cTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGTGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCAGGCGAACAAAATCGCCGCTGCTCGGTGCCCACTGCTTATAACTTACgg                                                               >  2:4788190/1‑140 (MQ=18)
                                                                                     aTGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCCCCGCCCCCAGCAACCCCCGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCATACGGCTaaccgg                                                       >  2:6182145/1‑135 (MQ=17)
                                                                                      tgtgCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAGCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGt                                                      <  1:10314667/140‑1 (MQ=255)
                                                                                        tgCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGCGGCCAAACGCCGCCCCCCCCAGCACCCCCCGGCTCTGGCGAACAAAAACGCCGCTGCGCGGTGCCCACGGCATATCCCTTACGGCTACCGCGTCg                                                    >  2:9556051/1‑140 (MQ=14)
                                                                                        tgCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCg                                                    >  2:9065514/1‑140 (MQ=255)
                                                                                        tgCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCAGCACCCCCCGGCTCTGGCGAACAAAAACCCCGCAGCGCGGAGCCCTCCGCATATCCCTTACGGCTACCGGGTCg                                                    >  2:9715988/1‑140 (MQ=14)
                                                                                        tgCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAACGCCGCCCCCCCCAGCACCCCCCGGCGCAGGCGAACCAAATCCCCGCAGCGCCGTGCCCCCGGCATATCCCATACCGCAACCCGGTCg                                                    >  2:1891231/1‑140 (MQ=14)
                                                                                        tgCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAAAGCCGCCCCCCCCAGCACCCCCCGGCTCAGGCGGACAAAAACGCCGCAGAGCGGTGGCCGCGGCGTATACCCTACGGCTACCGGGGCg                                                    >  2:3084049/1‑140 (MQ=14)
                                                                                          cATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCggg                                                  <  1:7918104/140‑1 (MQ=255)
                                                                                          cATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCggg                                                  <  2:3202409/140‑1 (MQ=255)
                                                                                          cATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCggg                                                  <  1:1530031/140‑1 (MQ=255)
                                                                                           aTTGCTTCATATAATCCCTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgc                                                 <  2:2241384/140‑1 (MQ=255)
                                                                                            ttGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcg                                                <  1:3191903/140‑1 (MQ=255)
                                                                                             tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGCGGCCCAACCCCCCCCCCCCCCCCACCCCCCGGCACTGGCCACCAAAAACCCCCCAGCGCGGGGCCCGCCGCGTATCCCATAAGGCTACCCGG‑CGGTcgcg                                              >  2:1338264/1‑140 (MQ=9)
                                                                                             tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCCAAACCCCCCCCCCCCAGCAACCCCCGGCTCTTGCGCAAAAAAAAACCGCAGCGCGGGGCCCCCCGCATAAGCCATAAGGCAAACCCGTCGGgcgc                                               >  1:6514867/1‑140 (MQ=9)
                                                                                             tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATcgccgcc                                                                                                                                     <  1:10663831/54‑1 (MQ=255)
                                                                                             tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCCCCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCGCGGCTTATCCCTTACGGCGACCGGGTCGGgcgc                                               >  2:7169724/1‑140 (MQ=255)
                                                                                             tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAACGCCGCCGCCCCCTGCCCCCCCCGGCTCTGGCGAACAAAATAGCCGCAGCGCGGGGCCCACGGCGTATCCCAAACGGCTACCCGGTCGGgcgc                                               >  2:6223627/1‑140 (MQ=14)
                                                                                             tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAACGCCGCCGCCCCCAGCACCCCCGGGCTCTGGCGAACAAAATCGCCCCTGCGCGGTGCCCACGGCTTATCCCATACGGCTACCCGGTCGGgcgc                                               >  2:5667727/1‑140 (MQ=14)
                                                                                             tGCTTCAGATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGGCGCCGCCCCCTGCACCCCCGGGCTCTGGCGACCAAAATCGCCGCTGCGCGGTGCCCACGGCTTATCCCTTACGGCTCCCCGGTCGGgcgc                                               >  2:9799124/1‑140 (MQ=14)
                                                                                                ttCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCAGGCGAACAAAATCGCCGCTGCGCGGTGCCCACGGCGTATCCCATACGGCAACCCGGTCGGGCGCGAg                                            >  2:6543419/1‑140 (MQ=14)
                                                                                                    tataATCCCTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTaa                                        <  1:6785482/140‑1 (MQ=37)
                                                                                                    tataATCACTGGCGCAAGGAGCGC‑GGCGGGGGCGGCCAAAAGCCGCCCCCCCCAGCACCCCCCGGCTCTGGGGCACAAAATAGCCGCAGCGCGGTGCCCACGGCGTATACCATAAGGCGACCCGGGGGGGCGCGAGGGaa                                        >  2:4394736/1‑140 (MQ=2)
                                                                                                    tataATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAAAGCCGCCGCCCCCAGCACCCCCCGGCTCTGGCGAACCAAATCGCCCCGGCGCGGTGCCCGCGGCTGATACCGTAAGGCTACCCGGTCGGGCGCGAGGTaa                                        >  2:8693784/1‑140 (MQ=11)
                                                                                                      taATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACa                                      <  2:6514866/140‑1 (MQ=35)
                                                                                                      taATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACa                                      <  2:6853107/140‑1 (MQ=35)
                                                                                                      taATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACa                                      <  1:507117/140‑1 (MQ=35)
                                                                                                      taATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACa                                      <  1:8469085/140‑1 (MQ=35)
                                                                                                       aaTCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACAt                                     <  2:3778388/140‑1 (MQ=34)
                                                                                                         tCACTGGCGCAAGGAGCGC‑GGCGGGGGCGGCCAAACGCCGCCCCCCCCAGCACCCCCCGGCTCTGGCGCACAAAAAAGCCCCCGCGCCGGGCCCCCCGCCTATACCCAACCGCTAACCGGGCGGGCGCCAGGGAACAAcc                                   >  2:8469084/1‑140 (MQ=255)
                                                                                                         tCACTGGCGCAAGGAGCGC‑GCCGGGGGCGGCCAATCGCCCCCCCCCCCAGCCCCCCCCGGCGCTGGCGAACAAAATCCCCCCGGCGCGGTGCCCACGGCGTATACCATACGGCTACCCGGGCGGGCGCGCGGGAACAtac                                   >  2:3653327/1‑138 (MQ=2)
                                                                                                         tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCCAACGCCGCCGCCCCCAGCACCCCCGGGCTCTGGCGAACAAAATAGCCGCGGCGCGGTGCCCACGGCTTATACCATAACGCTACCCGGTCGGGCGCGAGGTAACAAcc                                   >  2:808809/1‑140 (MQ=11)
                                                                                                         tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGGCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGGAACagac                                   >  2:9080420/1‑137 (MQ=16)
                                                                                                         tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAACGCCGCCCCCCCCAGCACCCCCGGGCTAAGTCGAAAAAAAAACCCGCTGCGGGGTGCCCCCCGGATATACCTAACGGCTACCGGGTCGGGCGCGAGGGAACaaac                                   >  2:6797949/1‑137 (MQ=2)
                                                                                                         tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAAAGCCCCCCCCCCCAGCACCCCCCCGCTCAGGCGAAAAAAAAAGCCCCAGCGCGGTGCCCACGGCGTATACCATAAGGCTACCCGGGCGGGCGCGAGGTaaaaacc                                   >  1:9991258/1‑135 (MQ=2)
                                                                                                            cTGGCGCAAGGAGCGC‑GGAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCCCCCCTGCGCGGTGGCCGCGGCGTATCCCTTACGGCTACCCGGTCGGGCGCGTGGTAACCTcccag                                >  2:4528095/1‑138 (MQ=11)
                                                                                                              ggCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTa                              <  2:9926337/140‑1 (MQ=32)
                                                                                                                         cgc‑gcAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt                   <  1:5620300/140‑1 (MQ=32)
                                                                                                                         cgc‑gcAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt                   <  1:5518519/140‑1 (MQ=32)
                                                                                                                         cgc‑gcAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt                   <  1:1672862/140‑1 (MQ=32)
                                                                                                                          gc‑gcTGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTc                  <  1:951106/140‑1 (MQ=17)
                                                                                                                          gc‑gcGGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTc                  <  1:1220795/140‑1 (MQ=17)
                                                                                                                              cAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGc               <  2:1916741/140‑1 (MQ=32)
                                                                                                                              cAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGc               <  2:3960937/140‑1 (MQ=32)
                                                                                                                              cAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGc               <  1:9529545/140‑1 (MQ=32)
                                                                                                                              cAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGc               <  1:8851866/140‑1 (MQ=32)
                                                                                                                              cAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGc               <  2:4843444/140‑1 (MQ=32)
                                                                                                                               aGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGcc              <  2:4166121/140‑1 (MQ=32)
                                                                                                                                   ggcggcCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca          <  2:2875404/140‑1 (MQ=32)
                                                                                                                                   ggcggcCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca          <  2:7750260/140‑1 (MQ=32)
                                                                                                                                   ggcggcCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca          <  2:5931697/140‑1 (MQ=32)
                                                                                                                                   ggcggcCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca          <  2:1345544/140‑1 (MQ=32)
                                                                                                                                   ggcggcCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca          <  1:6909529/140‑1 (MQ=32)
                                                                                                                                   ggcggcCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca          <  1:6182145/140‑1 (MQ=32)
                                                                                                                                       gcCAATCGCCGCCGCCCCCAGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCGCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCAGTAAAACGCGCCCTCAGCCCACATCCa      >  1:7695988/1‑140 (MQ=12)
                                                                                                                                        ccAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACCTCCAt     >  1:10446240/1‑140 (MQ=17)
                                                                                                                                        ccAAACGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAt     >  1:7828420/1‑140 (MQ=17)
                                                                                                                                           aTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAATTCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAGCATCCCTGTAAATCGCGCCCTCAGCCCACATCCAtgtg  >  2:6121666/1‑140 (MQ=12)
                                                                                                                                           aTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAtgtg  >  2:1252124/1‑140 (MQ=32)
                                                                                                                                           aTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAtgtg  >  1:6201883/1‑140 (MQ=32)
                                                                                                                                           aTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAtgtg  >  1:3910344/1‑140 (MQ=32)
                                                                                                                                            |                                                                                                                                          
AAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTG  >  NZ_CP025268/2233086‑2233363

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑