Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0252682,233,2300GC21.5% 244.1 / 23.8 121intergenic (+130/+243)yohP/dusCsmall membrane protein YohP/tRNA dihydrouridine(16) synthase DusC
Reads supporting (aligned to +/- strand):  ref base G (51/44);  new base C (26/0);  total (77/44)
Fisher's exact test for biased strand distribution p-value = 1.41e-06
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 131 total aligned reads displayed.

GATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGG  >  NZ_CP025268/2233091‑2233365
                                                                                                                                            |                                                                                                                                       
  tatTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATcgccgcc                                                                                                                                       <  2:1215356/140‑1 (MQ=255)
  tatTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATcgccgcc                                                                                                                                       >  2:1530031/1‑140 (MQ=255)
   atTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATcgccgccg                                                                                                                                      <  2:6266380/140‑1 (MQ=255)
   atTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATcgccgccg                                                                                                                                      >  1:8226112/1‑140 (MQ=255)
     tttAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCgccgccgcc                                                                                                                                    <  2:7446988/140‑1 (MQ=255)
       tAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGcccc                                                                                                                                  >  2:8019167/1‑140 (MQ=255)
                 taatGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCAccccc                                                                                                                        <  2:5500518/140‑1 (MQ=255)
                    ggTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAAACACGGGCGCACGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCggg                                                                                                                     <  1:3928286/139‑1 (MQ=255)
                        atcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGGCGGGGGGGGGCCAA‑AGCCCCCCCCCCCCGCAcccccccgcaca                                                                                                                 >  1:8475172/1‑133 (MQ=37)
                        atcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCCAAAGCCCCCCCCCCCAGCACCCCCCGGctct                                                                                                                 >  1:9913442/1‑140 (MQ=37)
                         tcaGGTCCGAAAAAAACGAGAATATTTCAGTCTCTCTTCGTGTTGCGCTCCTGTCATGAGCATTGCTTAATATAATCACTGGAGCAAGGAGCGC‑GCAGGGGGGTGCCAATGGCCCGCGGCCCCTGCACACCCGGGCGCTg                                                                                                                >  2:6756223/1‑140 (MQ=25)
                             gTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGGGGCCAAAAGCCGCCGCCCCCAGCACCCCCCGGCGCAGGCGa                                                                                                            >  2:1136370/1‑140 (MQ=25)
                             gTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAACGCCGCCGCCCCCAGCACCCCCCGGCGCTGGCGa                                                                                                            >  1:4583319/1‑140 (MQ=255)
                                cGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACa                                                                                                         >  2:9529544/1‑140 (MQ=255)
                                cGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCAGCACCCCCGGGCTCAGGCGAACa                                                                                                         >  2:3707303/1‑140 (MQ=255)
                                cGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAACGCCGCCGCCCCCAGCACCCCCCGGCGCTGGCGAACa                                                                                                         >  2:3706139/1‑140 (MQ=255)
                                  aaaaTAACGAGAATATTTCAGTCTCTCCTCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCAGCACCCCCGGGCTCTGGCGcacaca                                                                                                       >  2:8851865/1‑138 (MQ=255)
                                  aaaaTAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACaaa                                                                                                       >  2:8172508/1‑140 (MQ=255)
                                       aaCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGCGGGGGCGGGCAAAAGCCGCCCCCCCCCGCACCCCCCGGCGCTGGCGCACAAAAAcgc                                                                                                  >  1:7082540/1‑140 (MQ=25)
                                       aaCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATcgc                                                                                                  >  2:7424523/1‑140 (MQ=255)
                                       aaCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATagc                                                                                                  >  2:10607357/1‑140 (MQ=255)
                                        aCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGGGGCCAATGGCCCCCGCCCCCACCACCCCCCGGGTCTGGCGAACaaaaaagcc                                                                                                 >  2:1306273/1‑135 (MQ=21)
                                        aCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAACGCCGCCGCCCCCAGCACCCCCCGGCTCAGGCGAACAAAATagcc                                                                                                 >  2:5620300/1‑140 (MQ=21)
                                               tatTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGCGGCCCAAAGCCCCCCCCCCCACCACCCCCCGGCTCTGGCGAACCAAATAGCCGCAgcgc                                                                                          >  1:8916100/1‑140 (MQ=21)
                                                       tctctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCCCCGCCCCCAGCACCCCCGGGCTCAGGCGAACAAAATCGCCGCAGCGCGGTGccca                                                                                  >  2:8803646/1‑139 (MQ=255)
                                                         tctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGAGGGGGCGGCCCATAGCCCCCGCCCCCAGAACCCCCCGGCACTTGCGAACAAAATCGCCGCGGCGCGGGGCCcgcg                                                                                >  1:5680480/1‑140 (MQ=18)
                                                         tctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCACGGGGCGGCCAAAAGCCCCCGCCCCCAGCACCCCCCGGCACAGGCGAAAAAAAAAGCCCCAGCGCCGTGCCCACg                                                                                >  2:3503441/1‑140 (MQ=18)
                                                           tcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGCGGCCCAAAACCCCCCCCCCCACCACCCCCCGGCTCAGGCGAAAAAAAAAACCCCAGCGCGGTGCCCACGGc                                                                              >  1:10845147/1‑140 (MQ=16)
                                                            cATCCTGTTGCGCTCCTGTCATGTGCATTGCTGCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCCATCGGCGCCGCCCCCAGCACCCACGGGCTCTGGCGTACCAAATCGGCGCTGCGGGGGGGCCTggggg                                                                             >  2:9123069/1‑138 (MQ=17)
                                                            cATCCTGTGGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGCGGCCAATCGCAGCCGCCCCCTGCACCCCCGGGCTCTGGCGAAACAACTCGCCGCTGCGCGGTGCCCTCGGCt                                                                             >  2:6569557/1‑140 (MQ=18)
                                                              cccTGTTGCGCTCCTGTCAATTTCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGAACCCCCGGGCTATGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTa                                                                           <  2:10500733/139‑1 (MQ=18)
                                                                   ttGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGATGGGGGCGCCAAAACCCCCCCCCCCCACCCCCCCCCCGCGCAGGCGTACAAAAAAGCCGCGGCGCGGGGGCCACGGCATATacca                                                                      >  2:103227/1‑139 (MQ=255)
                                                                   ttGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGGGGCCAAAACCCCCCCCCCCCAGCAACCCCCGGCACAGGCGAACAAAAACCCCCCGGCGCCGTGGCCACCGCGTATacca                                                                      >  1:4723040/1‑139 (MQ=12)
                                                                   ttGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAAAGCCGCCCCCCCCAGCACCCCCCGGCGCAGGCGAACAAAAACGCCCCAGCGCGGTGCCCACCGCTTATccca                                                                      >  1:9926338/1‑139 (MQ=18)
                                                                   ttGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAAACCCCCCCCCCCCAGCACCCCCCGGCACAGGCGAACAAAAAAGCCCCAGCGCGGTGCCCACGGCGTATacca                                                                      >  2:1156827/1‑139 (MQ=18)
                                                                     gcgcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTa                                                                    <  2:2621875/140‑1 (MQ=255)
                                                                     gcgcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCACCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAACCCtga                                                                    >  2:9382461/1‑138 (MQ=255)
                                                                     gcgcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATAGCCGCCGCCCCCAGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCGTATCCCATa                                                                    >  2:9068817/1‑140 (MQ=255)
                                                                      cgcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTAc                                                                   <  1:5393948/140‑1 (MQ=255)
                                                                       gcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGCCGCCACACCCCCCCGCCCCCAGCACCCCCCGGCCCAGGCGAACAAAAAACCCGCGGCGCGGGGCCCAAGGCATATACCATaag                                                                  >  2:5285461/1‑138 (MQ=12)
                                                                        cTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCATGGGGCGGCCCAACGCCCCCGCCCCCAGCACCCCCCGGCACAGTCGAACAAAATACCCCCGGCGCGGTGCCCACCGCGTATcccgaaccg                                                                 >  2:291913/1‑134 (MQ=16)
                                                                        cTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGTGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCAGGCGAACAAAATCGCCGCTGCTCGGTGCCCACTGCTTATAACTTACgg                                                                 >  2:4788190/1‑140 (MQ=18)
                                                                        cTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAACACCCCCCCCCCCAGCACCCCCCGGCACTTGCCAACAAAAACGCCGCGGCCCGGGGGCCACGGCGTATACCATaacg                                                                 >  2:4033319/1‑137 (MQ=12)
                                                                        cTCATGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCCCCCCCAGCACCCCCGGGCACAGGCGAACAAAAACGCCGCAGCGCGCTGCCCTCGGCATATAACATACgg                                                                 >  2:4787928/1‑140 (MQ=17)
                                                                           cTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCCATCGCCGCCGCCCCCAGCACCCCCCGGCTCAGGCGAACAAAAACGCCGCGGCGCGGTGCCCTCGGCATATCCCATACGGCTa                                                              >  2:7124645/1‑140 (MQ=17)
                                                                                aTGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCCCCGCCCCCAGCAACCCCCGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCATACGGCTaaccgg                                                         >  2:6182145/1‑135 (MQ=17)
                                                                                 tgtgCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAGCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGt                                                        <  1:10314667/140‑1 (MQ=255)
                                                                                   tgCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGCGGCCAAACGCCGCCCCCCCCAGCACCCCCCGGCTCTGGCGAACAAAAACGCCGCTGCGCGGTGCCCACGGCATATCCCTTACGGCTACCGCGTCg                                                      >  2:9556051/1‑140 (MQ=14)
                                                                                   tgCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGGGGCCCATCCCCCCCCCCCCCGGCACCCCCCGGCTCTTGCGAACAAAAAACCCCCAGCGCGGTGCCCACCGCGGAACCCATACCGCTAACCGGTCg                                                      >  2:610776/1‑140 (MQ=9)
                                                                                   tgCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCAGCACCCCCCGGCTCTGGCGAACAAAAACCCCGCAGCGCGGAGCCCTCCGCATATCCCTTACGGCTACCGGGTCg                                                      >  2:9715988/1‑140 (MQ=14)
                                                                                   tgCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAACGCCGCCCCCCCCAGCACCCCCCGGCGCAGGCGAACCAAATCCCCGCAGCGCCGTGCCCCCGGCATATCCCATACCGCAACCCGGTCg                                                      >  2:1891231/1‑140 (MQ=14)
                                                                                     cATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCggg                                                    <  1:1530031/140‑1 (MQ=255)
                                                                                     cATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCggg                                                    <  2:3202409/140‑1 (MQ=255)
                                                                                     cATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCggg                                                    <  1:7918104/140‑1 (MQ=255)
                                                                                      aTTGCTTCATATAATCCCTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgc                                                   <  2:2241384/140‑1 (MQ=255)
                                                                                       ttGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcg                                                  <  1:3191903/140‑1 (MQ=255)
                                                                                        tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGCGGCCCAACCCCCCCCCCCCCCCCACCCCCCGGCACTGGCCACCAAAAACCCCCCAGCGCGGGGCCCGCCGCGTATCCCATAAGGCTACCCGG‑CGGTcgcg                                                >  2:1338264/1‑140 (MQ=9)
                                                                                        tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATcgccgcc                                                                                                                                       <  1:10663831/54‑1 (MQ=255)
                                                                                        tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAACGCCGCCGCCCCCTGCCCCCCCCGGCTCTGGCGAACAAAATAGCCGCAGCGCGGGGCCCACGGCGTATCCCAAACGGCTACCCGGTCGGgcgc                                                 >  2:6223627/1‑140 (MQ=14)
                                                                                        tGCTTCAGATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGGCGCCGCCCCCTGCACCCCCGGGCTCTGGCGACCAAAATCGCCGCTGCGCGGTGCCCACGGCTTATCCCTTACGGCTCCCCGGTCGGgcgc                                                 >  2:9799124/1‑140 (MQ=14)
                                                                                           ttCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCAGGCGAACAAAATCGCCGCTGCGCGGTGCCCACGGCGTATCCCATACGGCAACCCGGTCGGGCGCGAg                                              >  2:6543419/1‑140 (MQ=14)
                                                                                               tataATCCCTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTaa                                          <  1:6785482/140‑1 (MQ=37)
                                                                                               tataATCACTGGCGCAAGGAGCGC‑GGCGGGGGCGGCCAAAAGCCGCCCCCCCCAGCACCCCCCGGCTCTGGGGCACAAAATAGCCGCAGCGCGGTGCCCACGGCGTATACCATAAGGCGACCCGGGGGGGCGCGAGGGaa                                          >  2:4394736/1‑140 (MQ=2)
                                                                                               tataATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCAGCCCCCTGCACACCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTAACGGGTCGGGCGCGAGGTaa                                          <  1:624283/140‑1 (MQ=255)
                                                                                               tataATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAAAGCCGCCGCCCCCAGCACCCCCCGGCTCTGGCGAACCAAATCGCCCCGGCGCGGTGCCCGCGGCTGATACCGTAAGGCTACCCGGTCGGGCGCGAGGTaa                                          >  2:8693784/1‑140 (MQ=11)
                                                                                               tataATCACTGGCGCAAGGAGCGC‑GACAGTGGCGGGCAAACTCCCCCCCCCCCATCACCCCCGGGCTCTGGCGAAAAAAAAAGCCCGAGCGCGGTTGCCTCGGCTGTTCCCATACGGCTACACGGTCGGGCGCGAGGTaa                                          >  2:8428590/1‑140 (MQ=2)
                                                                                                 taATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACa                                        <  1:507117/140‑1 (MQ=35)
                                                                                                 taATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACa                                        <  2:6853107/140‑1 (MQ=35)
                                                                                                 taATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACa                                        <  1:8469085/140‑1 (MQ=35)
                                                                                                  aaTCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACAt                                       <  2:3778388/140‑1 (MQ=34)
                                                                                                  aaTCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACAt                                       <  1:8693785/140‑1 (MQ=34)
                                                                                                    tCACTGGCGCAAGGAGCGC‑GCCGGGGGCGGCCAATCGCCCCCCCCCCCAGCCCCCCCCGGCGCTGGCGAACAAAATCCCCCCGGCGCGGTGCCCACGGCGTATACCATACGGCTACCCGGGCGGGCGCGCGGGAACAtac                                     >  2:3653327/1‑138 (MQ=2)
                                                                                                    tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCCAACGCCGCCGCCCCCAGCACCCCCGGGCTCTGGCGAACAAAATAGCCGCGGCGCGGTGCCCACGGCTTATACCATAACGCTACCCGGTCGGGCGCGAGGTAACAAcc                                     >  2:808809/1‑140 (MQ=11)
                                                                                                    tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGGCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGGAACagac                                     >  2:9080420/1‑137 (MQ=16)
                                                                                                    tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCAGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTAAGGCTACCGGGTCGGGCGCGAGGGAACATcc                                     >  2:6449900/1‑140 (MQ=16)
                                                                                                    tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAACGCCGCCCCCCCCAGCACCCCCGGGCTAAGTCGAAAAAAAAACCCGCTGCGGGGTGCCCCCCGGATATACCTAACGGCTACCGGGTCGGGCGCGAGGGAACaaac                                     >  2:6797949/1‑137 (MQ=2)
                                                                                                    tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAAAGCCCCCCCCCCCAGCACCCCCCCGCTCAGGCGAAAAAAAAAGCCCCAGCGCGGTGCCCACGGCGTATACCATAAGGCTACCCGGGCGGGCGCGAGGTaaaaacc                                     >  1:9991258/1‑135 (MQ=2)
                                                                                                       cTGGCGCAAGGAGCGC‑GGAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCCCCCCTGCGCGGTGGCCGCGGCGTATCCCTTACGGCTACCCGGTCGGGCGCGTGGTAACCTcccag                                  >  2:4528095/1‑138 (MQ=11)
                                                                                                         ggCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTa                                <  2:9926337/140‑1 (MQ=32)
                                                                                                                    cgc‑gcAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt                     <  1:5620300/140‑1 (MQ=32)
                                                                                                                    cgc‑gcAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt                     <  1:5518519/140‑1 (MQ=32)
                                                                                                                    cgc‑gcAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt                     <  1:1672862/140‑1 (MQ=32)
                                                                                                                     gc‑gcTGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTc                    <  1:951106/140‑1 (MQ=17)
                                                                                                                     gc‑gcGGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTc                    <  1:1220795/140‑1 (MQ=17)
                                                                                                                         cAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGc                 <  2:3960937/140‑1 (MQ=32)
                                                                                                                         cAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGc                 <  2:1916741/140‑1 (MQ=32)
                                                                                                                         cAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGc                 <  1:9529545/140‑1 (MQ=32)
                                                                                                                          aGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGcc                <  2:4166121/140‑1 (MQ=32)
                                                                                                                              ggcggcCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca            <  2:2875404/140‑1 (MQ=32)
                                                                                                                              ggcggcCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca            <  2:7750260/140‑1 (MQ=32)
                                                                                                                              ggcggcCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca            <  2:5931697/140‑1 (MQ=32)
                                                                                                                              ggcggcCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca            <  2:1345544/140‑1 (MQ=32)
                                                                                                                              ggcggcCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca            <  1:6909529/140‑1 (MQ=32)
                                                                                                                              ggcggcCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca            <  1:6182145/140‑1 (MQ=32)
                                                                                                                                  gcCAATCGCCGCCGCCCCCAGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCGCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCAGTAAAACGCGCCCTCAGCCCACATCCa        >  1:7695988/1‑140 (MQ=12)
                                                                                                                                   ccAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACCTCCAt       >  1:10446240/1‑140 (MQ=17)
                                                                                                                                   ccAAACGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAt       >  1:7828420/1‑140 (MQ=17)
                                                                                                                                      aTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAtgtg    >  1:6201883/1‑140 (MQ=32)
                                                                                                                                      aTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAtgtg    >  1:3910344/1‑140 (MQ=32)
                                                                                                                                        cgccgccgcCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGGAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTggg  <  2:607627/140‑1 (MQ=17)
                                                                                                                                            |                                                                                                                                       
GATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGG  >  NZ_CP025268/2233091‑2233365

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑