BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,292,848	0	A	T	73.4%	245.4 / 222.1	348	noncoding (11/132 nt)	CXP41_RS06830	RtT sRNA
Reads supporting (aligned to +/- strand): ref base A (53/37); new base T (66/182); total (123/225)
Fisher's exact test for biased strand distribution p-value = 8.20e-08
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 351 total aligned reads displayed.

TTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGC  >  NZ_CP025268/1292711‑1292985

ggacttttgaaagtGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATg                                                                                                                                         <  2:883642‑M1/126‑1 (MQ=255)

ggacttttgaaagtGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCACTCGCTGGCGCTCGAGACGAAACTAGGTCCAAGCTTCTCATCCTTCCCCGCATg                                                                                                                                         <  2:1970912‑M1/126‑1 (MQ=255)

  tattATGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                                                       <  2:7736891/138‑1 (MQ=255)

  attTAAGGAAGCGATGGTGGTGGGTGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                                                       <  2:10006568/140‑1 (MQ=255)

  attTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                                                       <  1:1806169/140‑1 (MQ=255)

  attTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGACCCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTggg                                                                                                                                       <  1:10670843/140‑1 (MQ=14)

  attTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTggg                                                                                                                                       <  2:4568026/140‑1 (MQ=14)

  attTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTggg                                                                                                                                       <  2:3796492/140‑1 (MQ=14)

  attTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCGGGCGCTCAAGACGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTggg                                                                                                                                       <  2:3059109/140‑1 (MQ=14)

  acttttgaaagtGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                                                       >  2:3371373‑M1/13‑140 (MQ=255)

    ttttgaaagtGATGGTGGTGGGGGTAGGATTATTGTGCGATGCGCGCGTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                                                     >  2:1654086‑M1/11‑140 (MQ=255)

    ttttgaaagtGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                                                     >  1:271250‑M1/11‑140 (MQ=255)

    ttAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCa                                                                                                                                     >  2:2011774/1‑140 (MQ=11)

    ttAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCa                                                                                                                                     <  2:429946/140‑1 (MQ=11)

      ttgaaagtGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGa                                                                                                                                   >  1:5404315‑M1/9‑140 (MQ=255)

      ttgaaagtGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGa                                                                                                                                   >  2:6736083‑M1/9‑140 (MQ=255)

           aGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACATTGGTCGAATCATCTCATCCTTACCCGCTTGGGCAGAATAtt                                                                                                                              >  2:6502051/1‑140 (MQ=11)

             cGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCa                                                                                                                                     >  2:2237798/1‑131 (MQ=11)

             cGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCGTTGTCGAAGCTTCTCATCCATACCCGCGAGGGCAGAATAATTg                                                                                                                            >  2:4853065/1‑140 (MQ=11)

             cGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTAGCACGCTGGCGCTACAGTCGCACCTTGGTCGAATATTAAAATACATACCCCCATGGGCAGGATAgttt                                                                                                                            >  1:5096713/1‑139 (MQ=2)

              GATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAAACATTGTCGAAGCATATCATACATACCCGCAAGGGGAGAAaatttaa                                                                                                                           <  1:5500465‑M1/140‑3 (MQ=255)

              GATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGAGGCAACGCTCTCTCGCTGGCGCTCGATTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCCAATGGGGCGAAaatttaa                                                                                                                           <  1:1193834‑M1/140‑3 (MQ=255)

               ATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCGCGAATCGAACCTTGGTCGAAGCTTATCAACCATCCCCGCATGGGCCGaacattaaat                                                                                                                          <  1:6895342‑M1/140‑5 (MQ=255)

                TGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGAtt                                                                                                                         >  1:1756712‑M1/1‑140 (MQ=255)

                TGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCGTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGAtt                                                                                                                         >  2:8985482‑M1/1‑140 (MQ=255)

                    GGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCgg                                                                                                                     >  1:5904785‑M1/1‑140 (MQ=255)

                    GGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCgg                                                                                                                     >  1:10358265‑M1/1‑140 (MQ=255)

                    GGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCgg                                                                                                                     >  1:2155057‑M1/1‑140 (MQ=255)

                    GGTGGGGGAAGGATTACCCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCgg                                                                                                                     >  1:5998765‑M1/1‑140 (MQ=255)

                      TGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGAt                                                                                                                   >  1:4446375‑M1/1‑140 (MQ=255)

                      TGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCAGGCGCTCAATTCGAACCTTTGTCGTACCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGAt                                                                                                                   <  2:1486457‑M1/140‑1 (MQ=255)

                        GGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCGGCGGCAACGCTCTCTCGCTGACGCTCGAGGCGAACCGTAGTCGAAGCTTCACATCCATCCCCGCCTGGGCCGACTATTTGTTTGCGGATTc                                                                                                                 <  2:3496525‑M1/140‑1 (MQ=255)

                          GGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTCCCTTCGGCACAGCTCACTCGGTGTCGGTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGTATTTTTGATTGGGGATTcgg                                                                                                               <  2:5218424‑M1/140‑2 (MQ=255)

                            AAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCtt                                                                                                             >  2:1339257‑M1/1‑140 (MQ=255)

                            AAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCACTCTCGCGGGCGCTCAAGGCGAACCTTGGTCGAAGCTTCTCATCCTTCACCGGTTGGGCAGAATATTTGAGTgcggattgggtg                                                                                                             <  1:6156831‑M1/140‑6 (MQ=255)

                             AGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCACAACCTTACCCCCATGGGCCGAATATTTAATTGCGGgttcggtgg                                                                                                            <  1:487669‑M1/140‑5 (MQ=255)

                             AGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATAGTTGGTTGCGGCTTCGTTTg                                                                                                            <  2:4087325‑M1/140‑1 (MQ=255)

                             AGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTg                                                                                                            <  2:8209410‑M1/140‑1 (MQ=255)

                               GATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGGGGATTCGCTTgag                                                                                                          <  1:2599241‑M1/140‑1 (MQ=255)

                               GATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGTTTgag                                                                                                          >  2:10336842‑M1/1‑140 (MQ=255)

                                    cTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTc                                                                                                     >  1:8010971/1‑140 (MQ=11)

                                    cTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCGGCGGCAACGCACACTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCATCCCCCCATGGGCAGAATATTTGTTTGCGGATTCGGTTGAGAAtta                                                                                                     >  1:7626098/1‑139 (MQ=11)

                                        gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCggg                                                                                                 <  2:8087567/140‑1 (MQ=11)

                                         cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCgggg                                                                                                >  2:10677604/1‑140 (MQ=11)

                                         cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCAgggg                                                                                                >  2:4129022/1‑140 (MQ=11)

                                               gcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTg                                                                                          <  1:5177824/140‑1 (MQ=11)

                                               gcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTg                                                                                          <  2:3654577/140‑1 (MQ=11)

                                                 gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGaa                                                                                        <  1:4707093/140‑1 (MQ=11)

                                                 gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGaa                                                                                        <  1:8905955/140‑1 (MQ=11)

                                                 gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGaa                                                                                        <  2:7117751/140‑1 (MQ=11)

                                                 gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCGGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGaa                                                                                        <  2:6197793/140‑1 (MQ=11)

                                                     cGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGGGGTCAAGTATAAACTTGGTCGAAGCTTCTCATACTTACCCGGTTTGGCAGTATATTTGATTGCGGATTGGTTTGTGAATTACGGGGCTTTTGTAAGTg                                                                                    >  2:9231169/1‑140 (MQ=2)

                                                      gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGa                                                                                   <  1:9206834/140‑1 (MQ=11)

                                                      gCCCTTCGGGTCGTTGCCGGCGGCAACGCGCTCTCGCGGGCGCTCAAGTCGAACCGTGGTCGAAGCGTCTCATCCGTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGGGTTTGTAAGTGa                                                                                   >  1:9579361/1‑140 (MQ=11)

                                                      gCCCTACGGGTCGTTGCCTGCGGCAACGCTCTCACGCTGGCGCTCAAGTCGATCCTTGGTCGAAGCTACTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGACAgaga                                                                                   <  2:2842773/140‑1 (MQ=11)

                                                        ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCGTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCCGAATATTTGATTGCGGATTCGTTGGGGAGGTCCGGGGCTTTTGAAAGTGTtg                                                                                 >  2:7920776/1‑140 (MQ=11)

                                                         cTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGAtgg                                                                                <  1:1419767/140‑1 (MQ=11)

                                                          ttCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGAtggt                                                                               <  1:1106666/140‑1 (MQ=11)

                                                          ggcGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGAtggt                                                                               <  2:6066602/138‑1 (MQ=11)

                                                             gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGAtggtggt                                                                            <  1:7272775/140‑1 (MQ=11)

                                                             gggTCGTTGCCTGCGGCAACGCTCTCACGCTGGCGCTCAAGTCGAACCTTGGTCTAAGCTTCTCATCCTTCCCCGCTTGGGCAGATTATTTGATTGCGGATTCGTTTGAGAATTCCGTGGCTTTTGAAAGTGAtggtggt                                                                            <  1:7764897/140‑1 (MQ=11)

                                                                  gTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTggggg                                                                       <  2:943081/140‑1 (MQ=11)

                                                                  gTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTggggg                                                                       <  1:1976975/140‑1 (MQ=11)

                                                                  gTTGCCTGCGGCAACGCTCTCTCGCGGGCGCTCAAGTCGAAGCTTTGTCGAAGCTTCTCATCCTTAACCGCTTTGGCATAAAATTTGATTTCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGAtggtgctgtgtc                                                                       >  2:5375032/1‑136 (MQ=11)

                                                                       cTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGa                                                                  <  1:3719187/140‑1 (MQ=11)

                                                                       cTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGa                                                                  <  1:4971824/140‑1 (MQ=11)

                                                                       cTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGa                                                                  <  2:1762845/140‑1 (MQ=11)

                                                                       cTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGa                                                                  <  1:4087325/140‑1 (MQ=11)

                                                                       cTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGa                                                                  <  1:4569248/140‑1 (MQ=11)

                                                                       cTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGAGGTGGGGGAAGGa                                                                  <  2:3175044/140‑1 (MQ=11)

                                                                           ggCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCG‑AGCTTCTCATCCTTCCCCGCTTGGGCAGAATAATTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACt                                                             <  1:1230735/140‑1 (MQ=14)

                                                                            gCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACt                                                             <  1:10059896/140‑1 (MQ=14)

                                                                              taCGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGTTCGTAGCTTCTCATCCTTCCCCGATTGGTCTGATTATTTGATTGCGGAGTCGTTTGAGAATTCCGGGGCTTTTGTAAGTGATGGTGGTGGGGGAAGGATTACTCa                                                           <  2:3558416/139‑1 (MQ=14)

                                                                              aaCGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCa                                                           <  1:2969691/140‑1 (MQ=14)

                                                                              aaCGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCa                                                           <  2:4794200/140‑1 (MQ=14)

                                                                                   tctctcGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCt                                                      <  1:2476579/140‑1 (MQ=14)

                                                                                   tctctcGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCt                                                      <  1:8075179/140‑1 (MQ=14)

                                                                                   ccgctcGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCGTCCCCGCTTGGGCAGAATATTTGACTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGTTTACTCAGCGCt                                                      <  2:7426754/137‑1 (MQ=14)

                                                                                     tctcGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCgggg                                                                                                >  1:2838577/1‑96 (MQ=11)

                                                                                        ctcTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATACTTACACGATTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCTGGGCTTTTGAAAGTTATGGTGGTGGGGGAAGGATTACTCAGCGCTgcgcg                                                 <  1:6795374/138‑1 (MQ=14)

                                                                                          cTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGAGCTGCGCGCt                                               >  1:8502215/1‑140 (MQ=14)

                                                                                            ggCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCGTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTc                                             <  2:9702449/140‑1 (MQ=14)

                                                                                             gcgcTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCg                                            <  1:9709496/140‑1 (MQ=14)

                                                                                             gcgcTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCg                                            <  2:5608457/140‑1 (MQ=14)

                                                                                              cgcTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGc                                           <  1:228051/140‑1 (MQ=14)

                                                                                               gcTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCAGCATGGGCAGAATCTTTGATTGCGGATTCGTTAGAGAATTCCGGGGCTGTGGAAAGTGATGGGGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGcc                                          >  2:6962896/1‑140 (MQ=14)

                                                                                                   gAGCCGACCCGTCGTCGAAGCTTCGCATCCTTCCCCGCTTGGGCAGCATAGTTTATTGCGGAGGCGCTTGAGTGTTCAGGGCCTTTTGAAAGTGCTGGTGGTGGGGGAAGGATTACTCAGCGCTGGGCGCTTCGGCCTTc                                      <  2:8420697/140‑1 (MQ=2)

                                                                                                   aagtcGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGCTTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTc                                      <  1:4388598/136‑1 (MQ=14)

                                                                                                           ccttggtCGAAGCGTCTCCTCCGTCCCCGCTTGGGCAGATTCTTTGATTGCGGATTCGTTTGAGCATTCCGGGGCTTTTGCAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGtt                              <  2:3773433/134‑1 (MQ=14)

                                                                                                              tggtCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGcc                           <  1:4258706/137‑1 (MQ=255)

                                                                                                                gtCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTc                                      <  1:3418998/126‑1 (MQ=255)

                                                                                                                     aGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGGTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATAAAAAACCGCTGCGCGCATCGCCCATCGGGGCGTTGCCTGCGGCa                    >  2:2427303/1‑140 (MQ=14)

                                                                                                                      gCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCaa                   <  1:9362269/140‑1 (MQ=255)

                                                                                                                          ctcATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGct               <  1:1413950/140‑1 (MQ=255)

                                                                                                                               ccTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGACTTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCtctctc          >  2:5835129/1‑140 (MQ=255)

                                                                                                                                 ttCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGc        >  2:271250/1‑140 (MQ=255)

                                                                                                                                  tCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCt       >  1:7079663/1‑140 (MQ=255)

                                                                                                                                  tCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGAGGGTGGTGGGGGAAGGATTACCCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCt       >  2:5998765/1‑140 (MQ=255)

                                                                                                                                   ccccGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGaa                                                                                        >  1:6566111/1‑58 (MQ=17)

                                                                                                                                    cccGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACAAAGAGCTACGCGCATGACGCATCGTGTCGTTGCATGCGCCTAAGGTCGCTCGCTGa     >  2:6635848/1‑140 (MQ=9)

TTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGC  >  NZ_CP025268/1292711‑1292985

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`