BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	1,293,179	A→G	noncoding (36/132 nt)	CXP41_RS06840 ←	RtT sRNA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,293,179	0	A	G	98.7%	428.1 / NA	151	noncoding (36/132 nt)	CXP41_RS06840	RtT sRNA
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (96/53); minor base T (0/2); total (96/55)
Fisher's exact test for biased strand distribution p-value = 1.31e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 151 total aligned reads displayed.

GTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCT  >  NZ_CP025268/1293061‑1293316

gTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGAGCTGCGCGCTACGCCCATCTGGTCGTTGCCAGCGGCAACGCTCTCAAGCTGGCGCTCTAGTCGAAACTTGGTCGAAGCTTAACAACCTTccc                                                                                                                      >  1:9077593/1‑140 (MQ=11)

                                          cTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTTCGGCAACGCACACACGCATGCGCACAAGTCGAACCATGGTCGAAGAGTCTCAACCATCCCCCCATGGGCACAAAATTTGATTGCGGATTCGTTTgataaatc                                                                            >  1:6038604/1‑134 (MQ=0)

                                          cTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCGTAGTCGAAGCTTCTCAACCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTc                                                                            >  2:6524204/1‑140 (MQ=255)

                                          cTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCGGGCGCTCGAGCCGAACCGTAGTCGAAGCTTCTCATCCATCCCCCCAAGGGCCGAAAATTTTATTGCGGATTCGGTTGGGAGttg                                                                            >  1:5595843/1‑139 (MQ=11)

                                             aGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAgg                                                                         >  1:9941695/1‑140 (MQ=21)

                                              gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACTCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                                        <  1:8923211/140‑1 (MQ=255)

                                              gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                                        <  1:4954034/140‑1 (MQ=21)

                                              gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                                        <  2:4950772/140‑1 (MQ=21)

                                               cgcTGCGCGCTTCGCCCTTCGGTTCGTTGCATGCTGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGa                                                                       <  2:8502214/140‑1 (MQ=11)

                                               cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCAAGACGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGa                                                                       >  2:9447653/1‑140 (MQ=255)

                                               cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTAAGGGa                                                                       >  2:9389281/1‑140 (MQ=255)

                                                gcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGAc                                                                      >  1:4649291/1‑140 (MQ=255)

                                                gcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGAc                                                                      <  2:921580/140‑1 (MQ=255)

                                                gcTGCGCGCTTCGCCCTGCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCATCCCCGCATGGGCAGAAAATTTGATTGCGGCTTCGCTTGAGAGTTCAGGGAc                                                                      >  2:3233390/1‑140 (MQ=11)

                                                    cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCCACGCTCTCTCGCTGACGCTCGAGGCGATCCTTAGTCGAAGCTTCTCATCCCTGCCCGCATGGGCAGGAGATTTGATTGGGGATTCGCGGGCGAGTTCAGGGACgttt                                                                  >  2:1469081/1‑140 (MQ=11)

                                                    cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCCACGCTCTCTCGCTGACGCTCGAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCCTGGGCCGAATATTTGATTGCGGATTCGCTTGTGAGTTCAGGGACgttt                                                                  >  1:8673294/1‑140 (MQ=11)

                                                    cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGCCGCTCGAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGTTTGTGAGTTCAGGGACtttt                                                                  <  2:5376569/140‑1 (MQ=11)

                                                    cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCGGACGCTCGAGCCGAAGCGGAGTCGATGCATCTCCACCTTCCCCGCCGGGGCGGAAGAGTTGGTGGCGGATTCGCTTGTGAGGTCAGGGTCtggg                                                                  >  2:9897670/1‑137 (MQ=2)

                                                       gcggcGCCCCTCGGTTCGGTGCCTGCCGCACCGCTCTCTCGCTGACGCTCGAGCCGACCCCTCGTCGAAGCGTCTCCTCCTTCCCCGCATGGGCAGCATATTTGATTGCGGATTCGCTTGAGAGTTCCGGGACTTTTGaa                                                               <  2:10316824/136‑1 (MQ=11)

                                                       gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaa                                                               <  1:7925691/140‑1 (MQ=255)

                                                       gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaa                                                               <  1:7925589/140‑1 (MQ=255)

                                                       gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaa                                                               <  1:4129022/140‑1 (MQ=255)

                                                       gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaa                                                               <  2:288454/140‑1 (MQ=255)

                                                        cTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaaa                                                              <  2:7507210/140‑1 (MQ=255)

                                                        cTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaaa                                                              <  2:7626097/140‑1 (MQ=255)

                                                           cGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTg                                                           <  2:7515880‑M2/140‑2 (MQ=255)

                                                           cGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTg                                                           >  2:5805950‑M2/1‑139 (MQ=255)

                                                            gCCCTTCAGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGTCAGATTATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTga                                                          >  2:7457717‑M2/1‑138 (MQ=255)

                                                             cccTTCGGGTCGTTGCCTGCGGCATCGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgat                                                         >  1:2427303‑M2/1‑137 (MQ=255)

                                                             cccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgat                                                         >  2:4249938‑M2/1‑137 (MQ=255)

                                                             cccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgat                                                         >  2:2588026‑M2/1‑137 (MQ=255)

                                                             cccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgat                                                         >  1:7669661‑M2/1‑137 (MQ=255)

                                                             cccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgat                                                         >  1:9004185‑M2/1‑137 (MQ=255)

                                                              ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatg                                                        >  1:6590191‑M2/1‑136 (MQ=255)

                                                               cTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatgg                                                       >  1:8209411‑M2/1‑135 (MQ=255)

                                                                ttCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggt                                                      <  2:3407356‑M2/140‑7 (MQ=255)

                                                                 tCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCGCGAGCCGAACCTTAGTCGAAGCGTCTCATCCGTCCCCGCCTGGGCCGAATATTTGATTGCGGATTCGCGTGTGAGTTCAGGGACTTTTGTAAGTgatggtg                                                     <  1:1804920‑M2/140‑8 (MQ=255)

                                                                  cGGGTCGTTGCCTGCTGCTCCGCACTCTCCCACACGCTCGTTCCGAACCTTAGTCGAACCTTCTCATCCTTCCCCTCATGGGATGAATAATTGATTGCTGATTCGCTTTAGAGTTCTGGGACTTTTGAAAGTGAtggtgt                                                    <  2:8893621/140‑2 (MQ=9)

                                                                  cGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtgg                                                    >  2:4649291‑M2/1‑132 (MQ=255)

                                                                   gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggt                                                   >  1:1187332‑M2/1‑131 (MQ=255)

                                                                   gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggt                                                   >  1:7361230‑M2/1‑131 (MQ=255)

                                                                   gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggt                                                   >  1:5474503‑M2/1‑131 (MQ=255)

                                                                   gggTCGTTGCCGGCGGCTACGCTCTCTCGCTGACGCTCGAGCCGAACCTGAGTCGACGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGAGTGCGGAGTCGCTGGAGAGTTCAGGGACTTGTGAAAGTgatggtggt                                                   >  2:10196832‑M2/1‑131 (MQ=255)

                                                                   gggTCGTTGCCAGCGGCAACGCTCTCACGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCGTCCCCGCCAGGGCAGAATATTTGATTTCGGATTCGCTTGATAGTTCAGGGACTTTTGAAAGTGAtggtggt                                                   >  1:7379710/1‑140 (MQ=11)

                                                                    ggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGATTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtg                                                  >  1:2864320‑M2/1‑130 (MQ=255)

                                                                     gTCGTTGCCTGCGGCCACGCTCTCTCGCTGACGCGCGAGCCGAACCTTAGTCGAAGCTTCTCATCCATCCCCGCATGGGCCGAATATTTTATTGCGGATTCGCTTGAGAGTTCAGGGACGGTTGAAAGAGAtggtggtgg                                                 >  1:1654086/1‑140 (MQ=11)

                                                                     gTCGTTGCCGGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGAGTCGTGTGTGAGTTCAGGGTCGTTTGAAAGTGAgggtggggg                                                 >  2:8052684/1‑140 (MQ=11)

                                                                      tCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCTAGCAGTACCTTAGTCGAAGCTTCTCATCCTTCCCAGCATGGGCAGAATATTTGATTGCGGTTTCGCTTGAGAGTTCAGGGTCTTTTGAAAGTGATGGTGTTggg                                                <  2:6746794/140‑1 (MQ=11)

                                                                      tCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGACCCGAACCTGAGTCGAAGCTTCTCATCCTTCCCCGCTGGGGCAGATTCTTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtggg                                                >  2:6852697‑M2/1‑128 (MQ=255)

                                                                      gcGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTCGTCGAAGCGTCGCCTCCTTCCCCGCATGGGCAGACTATATGATTGCGGATTCGCTTGAGCGTTCAGGGACTTTTGAACGTGATGGTGGTggg                                                <  2:3960879/139‑1 (MQ=11)

                                                                        gTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCTAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCTGGGACTTTTGAAAGTgatggtggtggggg                                              >  1:7417670‑M2/1‑126 (MQ=255)

                                                                        gTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtggggg                                              >  2:2492643‑M2/1‑126 (MQ=255)

                                                                        gTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaa                                                               <  1:9491294/123‑1 (MQ=11)

                                                                        gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtggggg                                              >  1:8148085‑M2/1‑126 (MQ=255)

                                                                        gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtggggg                                              >  1:10776126‑M2/1‑126 (MQ=255)

                                                                        gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtggggg                                              >  1:3474755‑M2/1‑126 (MQ=255)

                                                                        gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtggggg                                              >  1:7417691‑M2/1‑126 (MQ=255)

                                                                        gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtggggg                                              >  1:5299481‑M2/1‑126 (MQ=255)

                                                                        gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCCAGACGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGATTTCAGGGACTTTTGAAAGTgatggtggtggggg                                              >  2:7912569‑M2/1‑126 (MQ=255)

                                                                         ttGCCTGCGGCAAAGCTCTCTCGCTGTCGCTCGAGCCGAACCGTAGTCGAAGCGTCTCATCCTTCCCCGCATGGGCAGAATATTTTAGTGCGGATTCGCTGGCGAGTTCAGGGACTTTTGAAAGTgatggtgggggggga                                             <  2:2752808‑M2/140‑16 (MQ=255)

                                                                          tGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCAGGGGCCGTATATGTGCGTGCGGCTTCGGTTGAGAGGGCTGGGACTTGTGAAAGTGATGGTGGTGGGGGag                                            >  2:7410038/1‑139 (MQ=11)

                                                                          tGCCAGCCGCAACGCTCTCTCGCTGACGCTCGAGCCCAAACTTAGTCGAAGCTTCACATCCTTCCCCCCAAGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaa                                            <  2:3403977‑M2/140‑17 (MQ=255)

                                                                           gCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCGTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaag                                           >  2:1655113‑M2/1‑123 (MQ=255)

                                                                            ccTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaagg                                          >  2:541997‑M2/1‑122 (MQ=255)

                                                                             cTGCGTCAACGCTCTCTCTCTGACGCTCGAGCCGAAACTTAGTCGTATCTTATCATCCTTCCCCGCATTGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgcgggaagga                                         >  1:5825229‑M2/1‑121 (MQ=255)

                                                                             cTGCGGCTACGCTCTCTCTCTGACGCTCGAGCCGACCCTTAGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGATTATTTGATTGCGGCTTCGATAGAGTTTTCATGGAATTTTGTAAGTGATGGTGGTGGGGGAAGGa                                         <  1:3801046/140‑1 (MQ=11)

                                                                             cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGCACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaagga                                         >  2:3482163‑M2/1‑121 (MQ=255)

                                                                             cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaagga                                         >  2:441275‑M2/1‑121 (MQ=255)

                                                                             cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaagga                                         >  2:5969771‑M2/1‑121 (MQ=255)

                                                                             cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTACCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaagga                                         >  2:9757256‑M2/1‑121 (MQ=255)

                                                                             cTGCGGCAACGCTCTCTCGCTGACGCTCGAGACGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaagga                                         >  1:10295380‑M2/1‑121 (MQ=255)

                                                                             cTGAGGCTACGGTCTCTCGCTGACGCTCGTGCCGAAACTGTTTGGAAGAGTCTCATCCGTCCCCGCTTGGGCATATTATTTGATTGCGGATTCGCTTGAGTGTTCAGGGACTTTTGTAAGTGATGGTGGTGGGGGAAGGa                                         <  2:9160177/140‑1 (MQ=2)

                                                                              tGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCATAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGATTGAGAGTTCAGGGACTTTTGAAAGTgatggtggggggggcagtaa                                        <  2:4007072‑M2/140‑21 (MQ=255)

                                                                               gCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGTTTCGCGTGAGTGTTCAGGGACGTTTGAAAGGgatggtggtgggggtaggatt                                       <  2:8235270‑M2/140‑22 (MQ=255)

                                                                                  gCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCATGGACTTTTGAAAGTgatggtggtgggggaaggattact                                    >  2:1086775‑M2/1‑116 (MQ=255)

                                                                                      cGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGTGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggcaggattactcagc                                <  1:565008‑M2/140‑29 (MQ=255)

                                                                                      cGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagc                                <  1:9571695‑M2/140‑29 (MQ=255)

                                                                                      cGCTCTCTCGCTGACGCTCGAGCCGAACCGTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactctgc                                <  2:6929219‑M2/140‑29 (MQ=255)

                                                                                          ctctcGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctg                            >  1:3407356‑M2/1‑108 (MQ=255)

                                                                                                cTGACGCTCGAGCCGAACCTTAGTCGAAGCGTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGAGTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgct                      >  1:5153436‑M2/1‑102 (MQ=255)

                                                                                                 tGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCAAGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcatcgctgcgcgcgt                     <  2:1081233‑M2/140‑40 (MQ=255)

                                                                                                  gacgctcGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTATAGAAAGTgatggtggtgggggtaggagtactcagcgctgcgcgcttc                    <  2:7100649‑M2/138‑41 (MQ=255)

                                                                                                   acgctCGAGCCGAACCTTAGTCGAAGCTTCTCATCCGTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcg                   >  1:7804379‑M2/2‑99 (MQ=255)

                                                                                                    cgcTCGAGCCGAACCTTAGTCGAAGCTTCTCCTCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgc                  >  1:5359572‑M2/1‑98 (MQ=255)

                                                                                                    cgcTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgc                  >  1:2407201‑M2/1‑98 (MQ=255)

                                                                                                     gcTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgcc                 <  1:19895‑M2/140‑44 (MQ=255)

                                                                                                      ctctAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGATATTTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACgg                <  2:10538725/140‑1 (MQ=14)

                                                                                                      cTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACgg                <  1:9848290/140‑1 (MQ=255)

                                                                                                      cTCCAGTCGAACCTTGGTCGAAGCTTCTCAGCCTTCCCCGCTTGGGCAGTCTATTTTTTTGAGGTTTAGTTGGGTAGTTCAGGGACTTTTGTAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACgg                <  1:10741003/140‑1 (MQ=9)

                                                                                                      cTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAAAATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACgg                <  1:6164565/140‑1 (MQ=14)

                                                                                                       tCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgccct               <  1:3820995‑M2/140‑46 (MQ=255)

                                                                                                       tCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgccct               <  1:6736084‑M2/140‑46 (MQ=255)

                                                                                                        caagtcGAACCTTGTTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCa              <  2:9542569/135‑1 (MQ=14)

                                                                                                        cGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgagcgcttcgccctt              >  1:10479504‑M2/1‑94 (MQ=255)

                                                                                                         gAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgcccttc             <  2:7510088‑M2/140‑48 (MQ=255)

                                                                                                           gCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgcccttcgg           <  1:9244540‑M2/140‑50 (MQ=255)

                                                                                                            ccGACCCTGAGTCGAAGCTTCTCCTCCTGCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgcccttcggg          >  2:8327400‑M2/1‑90 (MQ=255)

                                                                                                               aaCCTTAGTCGAAGCTTCTCATCCTTCCCCGCCTGGGCAGAATAATTGATTGCGGATTCGCTTGAGAGTTCCGGGACTTTTGAACGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgcccttcgggtcg       >  1:8637555‑M2/1‑87 (MQ=255)

                                                                                                               aaCCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgcccttcgggtcg       <  1:3103851‑M2/140‑54 (MQ=255)

                                                                                                                    tAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGAGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgcccttcgggtcgttgcc  <  2:7742639‑M2/140‑59 (MQ=255)

GTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCT  >  NZ_CP025268/1293061‑1293316

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`