BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	1,534,757	A→G	pseudogene (2037/2037 nt)	CXP41_RS08125 →	RHS repeat protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,534,757	0	A	G	99.7%	2370.3 / NA	678	pseudogene (2037/2037 nt)	CXP41_RS08125	RHS repeat protein
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (183/493); minor base T (0/2); total (183/495)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 680 total aligned reads displayed.

GTGGCGATTTTTCTGCCAAATGTAGCGATGCATGTATTGAAAAATATAACACTGGGCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAAAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCAAAGAGCGTTGAGATATATCTTT  >  NZ_CP025268/1534621‑1534885

 tgGCGATTTTTCTGCCAAATGTAGCGATGCATGTATTGAAAAATATAACACTGGGCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGc                                                                                                                              <  1:1376038/140‑1 (MQ=255)

 tgGCGATTTTTCTGCCAAATGTAGCGATGCATGTATTGAAAAATATAACACTGGGCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGc                                                                                                                              <  2:948565/140‑1 (MQ=255)

  ggCGATTTTTCTGCCAAATGTAGCGATGCATGTATTGAAAAATATAACACTGGGCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCa                                                                                                                             >  1:4266413/1‑140 (MQ=255)

               ccAAATGTAGCGATGCATGTATTGAAAAATATAACACTGGGCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCAtttt                                                                                                                <  2:6118469/140‑1 (MQ=255)

               ccAAATGTAGCGATGCATGTATTGAAAAATATAACACTGGGCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCAtttt                                                                                                                <  1:5050244/140‑1 (MQ=255)

               ccAAATGTAGCGATGCATGTATTGAAAAATATAACACTGGGCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCAtttt                                                                                                                <  1:8493112/140‑1 (MQ=255)

               ccAAATGTAGCGATGCATGTATTGAAAAATATAACACTGGGCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCAtttt                                                                                                                <  1:5641/140‑1 (MQ=255)

                cAAATGTAGCGATGAATGTATTGAAAAAAATAACCCTGGGCAC‑‑CTCTTCGGGTTAGATGGTATAAAAGCATATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGAGGC‑TCAAATTATTAGAGGCAAACTTGTCAtttttt                                                                                                              <  1:5222236/140‑1 (MQ=255)

                    tGTAGCGATGCATGTATTGAAAAATATAACACTGGGCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTaa                                                                                                           <  1:6251731/140‑1 (MQ=255)

                     gTAGCGATGCATGTATTGAAAAATATAACACTGGGCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAAt                                                                                                          <  2:2090807/140‑1 (MQ=255)

                     gTAGCGATGCATGTATTGAAAAATATAACACTGGGCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAAt                                                                                                          <  1:8647763/140‑1 (MQ=255)

                       aGCGATGCATGTATTGAAAAATATAACACTGGGCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTa                                                                                                        <  2:89938/140‑1 (MQ=255)

                         cGATGCATGTATTGAAAAATATAACACTGGTCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTAcc                                                                                                      <  2:244648/140‑1 (MQ=255)

                           aTGCATGTATTGAAAAATATAACACTGGGCAA‑‑CTCTTCTGCTTAGATGGTATAAAATCAGATAATCCAATCAAAGCCAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGCCAAACTTGTCATTTTTTTAATTACCCt                                                                                                    <  2:696007/140‑1 (MQ=255)

                           aTGCATGTATTGAAAAATATAACACTGGGCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAATTTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCt                                                                                                    <  1:2453135/140‑1 (MQ=255)

                           aTGCATGTATTGAAAAATATAACACTGGGCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCt                                                                                                    <  2:3772739/140‑1 (MQ=255)

                           aTGCATGTATTGAAAAATATAACACTGGGCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCt                                                                                                    <  1:7849611/140‑1 (MQ=255)

                           aTGCATGTATTGAAAAATATAACACTGGGCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCt                                                                                                    <  1:8912815/140‑1 (MQ=255)

                           aTGCATGTATTGAAAAATATAACACTGGGCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCt                                                                                                    <  2:4510688/140‑1 (MQ=255)

                           aTGCATGTATTGAAAAATATAACACTGGGCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCt                                                                                                    <  1:1548885/140‑1 (MQ=255)

                            ttcATGTATTGAAAAATATAACACTGGGCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCtt                                                                                                   <  2:8493376/138‑1 (MQ=255)

                             gCATGTATTGAAAAATATAACACTGGGCAACTCTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCt                                                                                                    <  1:4738430/140‑1 (MQ=255)

                              cATGTATTGAAAAATATAACACTGGGCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTaa                                                                                                           <  1:2014041/130‑1 (MQ=255)

                                  tATTGAAAAATATAACACTGGGCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTa                                                                                             >  2:6794013/1‑140 (MQ=255)

                                   aTTGAAAAATATAACACTGGGCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTc                                                                                                                     >  2:5222871/1‑115 (MQ=255)

                                   aTTGAAAAATATAACACTGGGCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTAt                                                                                            <  1:6973405/140‑1 (MQ=255)

                                     tGAAAAATATAACACTGGGCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTAttt                                                                                          >  1:9597031/1‑140 (MQ=255)

                                       aaaaaTATAACACTGGGCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCt                                                                                                    <  2:10352696/128‑1 (MQ=255)

                                         aaaTATAACACTGGGCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATttgttg                                                                                      >  2:2350889/1‑140 (MQ=255)

                                         aaaTATAACACTGGGCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATttgttg                                                                                      <  1:7317720/140‑1 (MQ=255)

                                           atatAACACTGGGCAA‑‑CTCTTCGGGTTAGATTGTATAAAAGCATATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTgttgtt                                                                                    <  2:1447108/140‑1 (MQ=255)

                                                acacTGGGCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCt                                                                               <  2:4076861/140‑1 (MQ=255)

                                                acacTGGGCAA‑‑CTCGTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTAccg                                                                               <  2:7472708/140‑2 (MQ=255)

                                                 cacTGGGCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTAcc                                                                                >  1:6455263/1‑138 (MQ=255)

                                                 cacTGGGCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCtt                                                                              >  1:10319565/1‑140 (MQ=255)

                                                  acTGGGCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTg                                                                             <  1:404985/140‑1 (MQ=255)

                                                      ggCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTaa                                                                                                           <  1:4813701/106‑1 (MQ=255)

                                                      ggCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTgttgtt                                                                                    >  2:6655832/1‑129 (MQ=255)

                                                      ggCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGtt                                                                         >  2:1896784/1‑140 (MQ=255)

                                                      ggCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGtt                                                                         >  2:966648/1‑140 (MQ=255)

                                                          a‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGAt                                                                     <  1:3189620/140‑1 (MQ=255)

                                                          a‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATACAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGAt                                                                     <  2:5812993/140‑1 (MQ=255)

                                                               ctTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAAc                                                                  <  1:5582024/140‑1 (MQ=255)

                                                                         gATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAAtt                                                        <  1:4452598/140‑1 (MQ=255)

                                                                          aTGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTc                                                       <  2:119746/140‑1 (MQ=255)

                                                                              tataAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTg                                                                             >  2:5536873/1‑114 (MQ=255)

                                                                               ataAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACa                                                  >  1:10561308/1‑140 (MQ=255)

                                                                               ataAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCCTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACa                                                  <  1:10046377/140‑1 (MQ=255)

                                                                                 aaaaGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATc                                                <  1:8133857/140‑1 (MQ=255)

                                                                                 aaaaGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATc                                                <  1:1739600/140‑1 (MQ=255)

                                                                                    aGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAgg                                                                                                                               >  1:2895947/1‑58 (MQ=255)

                                                                                    aGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCt                                                                               >  1:1641279/1‑106 (MQ=255)

                                                                                    aGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCt                                                                               <  2:1641279/106‑1 (MQ=255)

                                                                                        gATAATCCAATAATAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGt                                                                                                                      >  1:9328135/1‑63 (MQ=255)

                                                                                        gATAATCCAATAAAAGCAAAGCAAGGGATTTCAGATGCTTCAAATTATTAGAGTCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTAACTTGGGTTTGATAACAATTCAAATTCTGACATCGTAtttt                                         <  1:3846823/140‑1 (MQ=255)

                                                                                        gATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCAtt                                                                                                                  >  2:6334981/1‑67 (MQ=255)

                                                                                        gATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAAt                                                                                                          <  1:10086831/75‑1 (MQ=255)

                                                                                        gATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCtt                                                                                                   <  2:1699821/82‑1 (MQ=255)

                                                                                        gATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCt                                                                                                    >  2:10827739/1‑81 (MQ=255)

                                                                                        gATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCt                                                                                                    >  2:10625390/1‑81 (MQ=255)

                                                                                        gATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTg                                                                                                 >  1:1128023/1‑84 (MQ=255)

                                                                                        gATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTAtt                                                                                           <  1:5346267/90‑1 (MQ=255)

                                                                                        gATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATttg                                                                                         <  1:6551731/92‑1 (MQ=255)

                                                                                        gATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTtgttgt                                                                                     >  2:5023520/1‑96 (MQ=255)

                                                                                        gATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTc                                                       <  2:8760277/126‑1 (MQ=255)

                                                                                        gATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACAt                                                 >  2:8024994/1‑132 (MQ=255)

                                                                                        gATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACAt                                                 >  2:9782627/1‑132 (MQ=255)

                                                                                        gATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATc                                                >  2:9246565/1‑133 (MQ=255)

                                                                                        gATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTAtttt                                         >  2:3917991/1‑140 (MQ=255)

                                                                                        gATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTAtttt                                         >  1:3635740/1‑140 (MQ=255)

                                                                                            aTCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATgg                                     <  1:2707774/140‑1 (MQ=255)

                                                                                             tCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTAcc                                                                                <  1:9097395/96‑1 (MQ=255)

                                                                                               cAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACa                                  <  2:6480735/140‑1 (MQ=255)

                                                                                                 aTAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATa                                <  1:966648/140‑1 (MQ=255)

                                                                                                 aTAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTAATAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATa                                <  2:10198086/140‑1 (MQ=255)

                                                                                                   aaaaGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATaaa                              <  1:9936764/140‑1 (MQ=255)

                                                                                                    aaagcaaagcAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATaaaa                             <  2:8222595/140‑1 (MQ=255)

                                                                                                     aagcaaagcaAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAac                            <  2:4266177/140‑1 (MQ=255)

                                                                                                     aagcaaagcaAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAac                            >  2:8605064/1‑140 (MQ=255)

                                                                                                           agcaaGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCaaa                      <  2:3294303/140‑1 (MQ=255)

                                                                                                           agcaaGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCaaa                      <  1:3145938/140‑1 (MQ=255)

                                                                                                           agcaaGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCaaa                      <  2:7643787/140‑1 (MQ=255)

                                                                                                              aaGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCAAagag                   <  1:2350889/140‑1 (MQ=255)

                                                                                                                gggAGTTCAGATGCTTCTAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCAAAGAGCg                 <  2:2765898/140‑1 (MQ=255)

                                                                                                                gggAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCAAAGAGCg                 <  2:5604191/140‑1 (MQ=255)

                                                                                                                 ggAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCAAAGAGCGt                <  1:10834471/140‑1 (MQ=255)

                                                                                                                 ggAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCAAAGAGCGt                <  2:339026/140‑1 (MQ=255)

                                                                                                                 ggAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCAAAGAGCGt                <  2:7154985/140‑1 (MQ=255)

                                                                                                                 ggAGTTCAGATGCTTCAAAATATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCAAAGAGCGt                <  2:300389/140‑1 (MQ=255)

                                                                                                                 ggAGTTCAGAGGCTTCAAATTATTAGAGGCAAACTTGTCATTTTATTAATTACCCTTGGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCAAAGAGCGt                <  2:10064737/140‑1 (MQ=255)

                                                                                                                 ggAGTACAGATGCTTCAAATTTTTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACATTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCAAGGAGCGt                <  1:6035987/140‑1 (MQ=255)

                                                                                                                     ttCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCa                                                            <  1:79254/92‑1 (MQ=255)

                                                                                                                     ttCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCAAAGAGCGTTgag            <  2:2637090/140‑1 (MQ=255)

                                                                                                                             cTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCGAATTCTGACATCGTATTTTAt                                       <  1:8288336/105‑1 (MQ=255)

                                                                                                                             cTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCaaa                      <  1:9803386/122‑1 (MQ=255)

                                                                                                                              ttCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCt                                                                               >  2:1286881/1‑64 (MQ=255)

                                                                                                                               tCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATa                                <  1:6834922/110‑1 (MQ=255)

                                                                                                                               tCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCAAag                     <  2:5865938/121‑1 (MQ=255)

                                                                                                                               tCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCAAag                     >  1:5865938/1‑121 (MQ=255)

                                                                                                                                       ttaGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTg                                                                             <  1:7565892/57‑1 (MQ=255)

GTGGCGATTTTTCTGCCAAATGTAGCGATGCATGTATTGAAAAATATAACACTGGGCAA‑‑CTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAAAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCAAAGAGCGTTGAGATATATCTTT  >  NZ_CP025268/1534621‑1534885

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`