| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 3,782,939 | A→G | *397* (TAA→TAG) | lldD → | quinone‑dependent L‑lactate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 3,782,939 | 0 | A | G | 99.8% | 1861.2 / NA | 532 | *397* (TAA→TAG) | lldD | quinone‑dependent L‑lactate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (61/469); minor base T (1/0); total (62/470) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.17e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 532 total aligned reads displayed.
GAAAAAGAGATGAAAGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTG > NZ_CP025268/3782802‑3783073 | aaaGAGATGAAAGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGtt < 2:7282525/140‑1 (MQ=255) aaaGAGATGAAAGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGtt < 1:3104977/140‑1 (MQ=255) agaTGAAAGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGATATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTgcg < 1:9015174/140‑1 (MQ=255) agaTGAAAGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGACTGCGGCATAGTCGTGTgcg > 2:8125320/1‑140 (MQ=255) agaTGAAAGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTgcg > 2:239647/1‑140 (MQ=255) agaTGAAAGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTgcg < 1:7775328/140‑1 (MQ=255) agaTGAAAGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTgcg > 1:2251928/1‑140 (MQ=255) agaTGAAAGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTgcg > 2:10728110/1‑140 (MQ=255) agaTGAAAGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAAGTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTgcg < 2:9192541/140‑1 (MQ=255) aTGAAAGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑cc < 2:1652966/140‑1 (MQ=255) aaaGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCTGCATAGTCGTTTGCG‑‑ccccc < 2:3535815/140‑1 (MQ=255) aaaGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑ccccc < 1:1173956/140‑1 (MQ=255) aaGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCt < 1:194600/140‑1 (MQ=255) aaGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCt < 2:3820593/140‑1 (MQ=255) aaGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCt < 2:1473268/140‑1 (MQ=255) aaGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCt < 2:6101553/140‑1 (MQ=255) aaGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCt < 2:9785834/140‑1 (MQ=255) aaGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCt < 2:7569339/140‑1 (MQ=255) aaGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCt < 1:4319117/140‑1 (MQ=255) aaGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCt < 1:444179/140‑1 (MQ=255) aaGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCt < 1:10069955/140‑1 (MQ=255) tGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCCCAc > 1:5173796/1‑140 (MQ=255) aTGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTaa < 2:2156525/140‑1 (MQ=255) aCGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAAccc < 1:6421735/140‑1 (MQ=255) cGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCct < 1:2702347/140‑1 (MQ=255) cGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCct < 1:10000062/140‑1 (MQ=255) cGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCct < 1:6572929/140‑1 (MQ=255) cGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCct < 1:696127/140‑1 (MQ=255) cTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCctct < 2:4044243/140‑1 (MQ=255) cTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCctct < 1:1675979/140‑1 (MQ=255) cTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCctct < 2:6748279/140‑1 (MQ=255) cTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCctct < 1:7357784/140‑1 (MQ=255) aCTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTccc < 2:8373311/140‑1 (MQ=255) aCTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGAGGCACTGGCTCACATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTccc < 2:2484980/140‑1 (MQ=255) cTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCt < 2:6552280/140‑1 (MQ=255) ggCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCa < 1:128036/140‑1 (MQ=255) gcgcGAAATCGCTCAGCGAAAGTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAg < 2:8613847/140‑1 (MQ=255) gcgcGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCACCCCCGAAACCACACCCGCAg > 1:5525213/1‑140 (MQ=255) cgcgAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAgg < 2:3274404/140‑1 (MQ=255) gcgACATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCCTCACCCTAACCCTCTCCCTCAg < 1:9659523/140‑1 (MQ=255) cgAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCGCTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGga < 1:5326862/140‑1 (MQ=255) aaTCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCct < 1:6096314/125‑1 (MQ=255) gATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGa < 1:6777545/140‑1 (MQ=255) gATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGa < 1:8553743/140‑1 (MQ=255) gATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGa < 1:2498690/140‑1 (MQ=255) gATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGa < 2:8843961/140‑1 (MQ=255) gCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCTCTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGtt < 1:2869076/140‑1 (MQ=255) gCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGtt < 1:7535264/140‑1 (MQ=255) gCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGtt < 1:9242087/140‑1 (MQ=255) acttACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgc < 2:10314381/138‑1 (MQ=255) aaTTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgc < 1:2133867/140‑1 (MQ=255) aaTTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgc < 2:1317554/140‑1 (MQ=255) aaTTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgc < 1:3837122/140‑1 (MQ=255) aaTTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgc < 1:8468663/140‑1 (MQ=255) aaTTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgc < 1:3407648/140‑1 (MQ=255) aaTTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgc < 1:4802801/140‑1 (MQ=255) agtACCCAAGATTCCCTGGCGCAGGGGCTGGGAAAAGAGTTCCCACCGGCCCTGGCTCCCATGGCGAAACGGAAAGCTGCATAGTCGTTAGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCCGGGAGAGGGGACCGTTCGgcg < 2:5151332/138‑1 (MQ=255) aTTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgcg < 2:4697599/140‑1 (MQ=255) aTTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgcg < 2:5438475/140‑1 (MQ=255) aTTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgcg < 2:5684367/140‑1 (MQ=255) aTTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgcg < 1:9975866/140‑1 (MQ=255) aTTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgcg < 2:7146000/140‑1 (MQ=255) aTTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgcg < 1:8230122/140‑1 (MQ=255) aTTACGCAAGATTCCCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgcg < 1:10202262/140‑1 (MQ=255) ttACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgcgc < 1:3295250/140‑1 (MQ=255) ttACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgcgc < 2:10133510/140‑1 (MQ=255) ttACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgcgc < 1:9460219/140‑1 (MQ=255) ttACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgcgc < 2:5613565/140‑1 (MQ=255) tACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCt < 1:8071029/140‑1 (MQ=255) cGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgt < 2:302731/140‑1 (MQ=255) gCAAGACTCGCTGGTGCAGGGGCTGGGAACAGAGTTGCCTGCGGCACTGGCTCCCCTGGCGAAAGGGAATGCGTCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCACCCTCAGGGAGAGGGGACCGTTCGGCGCtgta < 2:4578529/140‑1 (MQ=255) gagtCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgtatgta < 2:7832358/137‑1 (MQ=255) cTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGTGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCt < 2:278941/140‑1 (MQ=255) cTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCt < 2:6295790/140‑1 (MQ=255) cTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCt < 1:8350048/140‑1 (MQ=255) ggggCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGa < 1:10433351/140‑1 (MQ=255) gggCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCACACCCTAACCCACACCCACAGGGAGACGGGACCGTTCGGCGCTGTATTTACTACCTCACTCTGaa > 2:9684524/1‑140 (MQ=255) gggTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCACACCCAAACCCACAACCTCACGGGGAGGGGACCCTTGGGCGCGGTTTGTACTCCCACACACTGAAAAGac > 2:5010864/1‑140 (MQ=255) aaaGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCg < 1:8740713/140‑1 (MQ=255) gagTTGCCTGCGGCACTGGCTCCCATGGCGAAATGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCAc < 2:10576321/140‑1 (MQ=255) tGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTTCG‑‑CCCCCACACCCTAAACCACTACCACCGGGAGAGGGGACCCTTCGGGGCTGTATGTACTCCCACACACTGAAACGACACCCCACACtt > 2:1858227/1‑140 (MQ=255) tGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑cccc > 2:9509304/1‑57 (MQ=255) tGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTGTGCG‑‑CCCCCTCACCCTAACCCTCTCCCACAGGGAGAGGGGACCGTTCGGCGCGGTATGGTCTCCCTCACACTGAAAAGACACCGCCCTCtt > 2:5944264/1‑140 (MQ=255) gCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCACTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCACACACTGTAACGACACCGCACTAttt > 2:9851394/1‑140 (MQ=255) gCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCttttttt < 1:10728111/140‑1 (MQ=255) cTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCt < 1:4630960/140‑1 (MQ=255) tGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCAAAACCACTCCCTCAGGGAGATGGGACCGGTCGGCGCGGTATTTACTACCTCACTAAGAAACGACACCCCCCTCATTTTTTATACCTc > 2:4482213/1‑140 (MQ=255) ggCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCACACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCg < 1:3950633/140‑1 (MQ=255) tCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGccc < 1:3641316/140‑1 (MQ=255) ccATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCt < 1:575071/140‑1 (MQ=255) cATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTc < 1:9836994/140‑1 (MQ=255) tGGCGAAAGGGAATGCGGCATAGTCGGTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCg < 2:6930027/140‑1 (MQ=255) cGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCgggg < 1:8879464/140‑1 (MQ=255) cGAAAGGGAATGCGGCATAGTCGTTTGAG‑‑CCCCCCCACCCCAAACCACTACCAGAAGGATTGGGGCCCGGTAGGGGCGGGATTTACACCCACACTCTGAAAAGACACCGCACACATTTTGTCTCCCACCCCCCACCcggg > 2:455803/1‑140 (MQ=255) gAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGga < 1:6223345/140‑1 (MQ=255) gAAAGGGAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGga < 2:5322129/140‑1 (MQ=255) gAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGc < 2:3933337/140‑1 (MQ=255) gAATGCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGc < 1:1858227/140‑1 (MQ=255) aaTGCGGCATAGTCGTTTGCG‑‑CCCCCACACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGcc < 2:8453076/140‑1 (MQ=255) gCGGCATAGTCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCggg < 2:8215390/140‑1 (MQ=255) | GAAAAAGAGATGAAAGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCG‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTG > NZ_CP025268/3782802‑3783073 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |