| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 2,204,490 | (A)7→8 | pseudogene (175/3632 nt) | CXP41_RS11705 → | DUF4132 domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 2,204,483 | 1 | . | A | 96.4% | 997.1 / 23.2 | 275 | pseudogene (168/3632 nt) | CXP41_RS11705 | DUF4132 domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base . (3/7); new base A (122/142); total (126/149) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.54e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 288 total aligned reads displayed.
AACGCCCAACTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAG‑AA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGCCTGTATCGCG > NZ_CP025268/2204346‑2204617 | aaCGCCCAACTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAgaag‑aa > 1:1174837/1‑140 (MQ=255) cGCCCAACTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAG‑aa‑aa > 1:5175557/1‑140 (MQ=255) cccAACTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAG‑aa‑aaaa > 2:3355708/1‑140 (MQ=255) aCTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAG‑aa‑aaaaaaca < 1:1434524/140‑4 (MQ=255) aaCTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTc > 1:567587/1‑140 (MQ=255) taAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATg > 1:2254146/1‑140 (MQ=255) taAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTCTCTGGCGTTATg > 2:103123/1‑140 (MQ=255) aaaaGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATgaga > 2:1372150/1‑140 (MQ=255) gCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAAtttt > 1:489163/1‑140 (MQ=255) gCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAAtttt > 1:490105/1‑140 (MQ=255) aaCGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCAc < 1:2337130/140‑1 (MQ=255) aaCGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAG‑AACAAAAACATTGTCTGGCGTTATGAGAATTTTTCAc < 1:2898193/140‑1 (MQ=255) gcTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGt < 1:4021980/140‑1 (MQ=255) agccATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCCGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCa < 2:89721/137‑1 (MQ=255) ccttgtcgCTGGGCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAATCTGAGATGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTc < 2:738147/136‑1 (MQ=255) cATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACTTTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTc < 1:3711230/140‑1 (MQ=255) cATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGGATTTTTCACTGGAGTGGCAGTc < 2:5022640/140‑1 (MQ=255) cATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTc < 2:5041049/140‑1 (MQ=255) gtcgCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGcc > 1:4274395/1‑140 (MQ=255) gCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATc > 1:3397077/1‑140 (MQ=255) gCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATc > 1:3089795/1‑140 (MQ=255) tGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCAc > 1:897085/1‑140 (MQ=255) ccGGGCGAACCAGTGTCCTTTATCACTGGAAGTCACATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCa < 2:3264167/140‑1 (MQ=255) ccGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCa < 1:4442865/140‑1 (MQ=255) ggCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGc > 1:4381577/1‑140 (MQ=255) gCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGcc < 2:495123/140‑1 (MQ=255) gCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTAAAAAAAGCTGACAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGcc < 2:1659090/140‑1 (MQ=255) aaCCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATc < 1:4982656/140‑1 (MQ=255) tgtCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTg > 1:4222355/1‑140 (MQ=255) tgtCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGGCGGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCAGCAAGTTg > 1:1393184/1‑140 (MQ=255) tCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGAt > 1:674787/1‑140 (MQ=255) tATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCg < 1:1708797/140‑1 (MQ=255) tATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCg > 2:4819709/1‑140 (MQ=255) tATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCg < 2:2008994/140‑1 (MQ=255) cACTGGAAGTCTCATCCAGACATTGGGTGATGAATTTCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAAATTGATCGGCGAac > 2:4503239/1‑140 (MQ=255) tGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAAcaca < 1:2967117/140‑1 (MQ=255) ggAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACaa < 2:2273827/140‑1 (MQ=255) ggAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACaa < 1:1661839/140‑1 (MQ=255) ggAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACaa < 1:1661696/140‑1 (MQ=255) ggAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACaa < 1:2407362/140‑1 (MQ=255) ggAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACaa < 2:479383/140‑1 (MQ=255) ggAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACaa > 1:3682819/1‑140 (MQ=255) ggAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACaa > 1:2762361/1‑140 (MQ=255) ggAAGTCTCATCCAGACATTGGGTGACGAATTGCTACAAAAAGCTGAGGAGCAA‑AAAAACATTTTCTGGAGTTATGAGAAATTTTTGCTGGAGTGGCAGGTCGTCATCACGCAGGACCTCTAATTGATCCGCGAACACaa > 2:1086129/1‑140 (MQ=255) gAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACaaa < 2:5182344/140‑1 (MQ=255) tctcATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCt > 2:3066095/1‑140 (MQ=255) tctcATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCt < 1:1575221/140‑1 (MQ=255) tctcATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCt < 2:1577732/140‑1 (MQ=255) tctcATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCt < 2:1577363/140‑1 (MQ=255) tctcATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCt > 2:568702/1‑140 (MQ=255) tctcATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCt > 2:1765898/1‑140 (MQ=255) tctcATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCt > 1:3160530/1‑140 (MQ=255) tctcATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCt < 1:2667688/140‑1 (MQ=255) tctcATCCAGACATTGGGTGATGAATTGCCACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCt < 2:2754266/140‑1 (MQ=255) tcATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCa > 1:1108380/1‑140 (MQ=255) aTCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAAt > 2:612040/1‑140 (MQ=255) aTCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAAt > 1:5064976/1‑140 (MQ=255) aTCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCACCAACTTGATCGGCGAACACAAACCCTCAAt > 2:3524856/1‑140 (MQ=255) tCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATc < 1:1019068/140‑1 (MQ=255) tCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATc < 1:356577/140‑1 (MQ=255) ccAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATcc > 2:4983487/1‑140 (MQ=255) cATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATcccggcc < 2:1230700/140‑1 (MQ=255) tGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATcccggcccgg > 1:161566/1‑140 (MQ=255) tGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTGTTCACTGGAGTGGCAGGCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATaccggcccgg > 2:2665759/1‑140 (MQ=255) gttgatgaATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGAc > 2:2576535/3‑140 (MQ=255) gTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACa < 1:2137527/140‑1 (MQ=255) gatgaATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAGTTTTTCACTGGAGTGGCAGTCCGCCATCACGAAGGGCATCAACTTGATCGGCGAACACAAACCCTCAAGCCCGGCCGGGACaag > 2:2541180/1‑139 (MQ=255) atgaATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTGACTGGTGTGGCAGTCCGCCATCACGCAGGCCATCAACTGGATCGGCAAACACAAACCCTCAAACCCGGCCCGGACAATg > 2:4318412/1‑140 (MQ=255) atgaATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATg > 1:4613724/1‑140 (MQ=255) atgaATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATg > 1:218142/1‑140 (MQ=255) atgaATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATg > 1:2583008/1‑140 (MQ=255) tgaATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATgg < 2:4010655/140‑1 (MQ=255) tgaATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATgg < 2:3853344/140‑1 (MQ=255) tgaATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATgg < 1:4864681/140‑1 (MQ=255) tgaATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATgg < 2:1460436/140‑1 (MQ=255) tgaATTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATgg < 1:790730/140‑1 (MQ=255) aTTGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATggcgg > 1:736251/1‑140 (MQ=255) tcttACAAAAAGATGAGACT‑AACAAAAGCATTCTCTGGCGTTATGTGTACTTTTCACTGCCGTGGCCGTCCCCCATCGCGAAGGCCATCAACTTGATCGGCGAACCCGAACCCTCTATCCCGGCCCGGACAATGgcggcg < 2:2438943/137‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:3446978/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:325252/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:3226742/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:4233769/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:1062571/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:1175479/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:3893588/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:4502291/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:3225345/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:4068016/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:1978592/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:2026142/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:1875536/140‑1 (MQ=255) tGCTACAAAAAGCGGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:5213260/140‑1 (MQ=255) tGCTACAAAAAGATGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:3656442/140‑1 (MQ=255) ggCTACAAAAAGCGGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGAGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCCATCCCGGCCCGGACAATGgcggcg < 2:2454159/139‑1 (MQ=255) tatacaaaGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACCTGACCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTa < 2:2175006/135‑1 (MQ=255) cAAAAAGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGc < 2:3160530/140‑1 (MQ=255) aaaaGCTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGCCt > 2:2834066/1‑140 (MQ=255) cTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCAGCACGCAGGCCATCAACTTGATCGGCGAACACAAACTCTCAATCCCGGGCCGGACAATGGCGGCGCTAGCCtagagc > 2:4592260/1‑135 (MQ=255) cTGAGAAGAAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGGGGCAGGCCACCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACATGGTCGGCGCTAGCCTGTATc > 2:1472108/1‑140 (MQ=255) agaagaAA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGCCTGTATcgcg < 2:4183754/140‑1 (MQ=255) | AACGCCCAACTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAG‑AA‑AAAAACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGCCTGTATCGCG > NZ_CP025268/2204346‑2204617 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |