| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 3,743,290 | +C | intergenic (‑66/‑116) | yiaJ ← / → galK | IclR family transcriptional regulator YiaJ/galactokinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 3,743,289 | 1 | . | C | 98.1% | 345.8 / ‑0.4 | 107 | intergenic (‑65/‑117) | yiaJ/galK | IclR family transcriptional regulator YiaJ/galactokinase |
| Reads supporting (aligned to +/- strand): ref base . (0/2); new base C (60/45); total (60/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.91e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 114 total aligned reads displayed.
CTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑A‑CAATTGATTTTTATGTCTTTTGAAATTCATCAATCCTGTTGACAATTAATCATCGGCATAGTATATCGGCATAGTATAATACGACAAGGTGAGGAACTAAACCCAGGAGGCAGATCATGAGTCTGAAAGAAAAA > NZ_CP025268/3743151‑3743423 | ctctGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑A‑c < 2:432225/140‑1 (MQ=255) tGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑A‑ccaa < 2:1001339/140‑4 (MQ=255) ggCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑A‑ccaat < 1:2551188/140‑5 (MQ=255) ggCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTCATGGTAGCGCACAGTGTGCCGTAGTTCACGATCTCGACCGATAATTTAT‑C‑A‑ccaat < 2:3726028/140‑5 (MQ=255) ggCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTGCTTTCCCCATTTTGTCGCGTCCTGATTGTCGCGCAAAGTGGGCCGTAGTTCACGCTCTCGACAGATAATTTAT‑A‑A‑ccaat > 2:3122230/1‑136 (MQ=255) ccGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGAtt > 1:4732977/1‑140 (MQ=255) ggCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCCTCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAC‑A‑ACCAATTGAtttt > 1:416916/1‑140 (MQ=255) ggCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGAtttt > 1:416956/1‑140 (MQ=255) ggCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGAtttt > 1:416698/1‑140 (MQ=255) ggACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATg < 2:4824287/140‑1 (MQ=255) gACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGt > 2:2968453/1‑140 (MQ=255) aCGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTc < 1:2968453/140‑1 (MQ=255) tctTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCtttt > 2:2847436/1‑140 (MQ=255) ttttCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGCTTTTTATGTCTTTTGaa < 1:421231/140‑1 (MQ=255) ttttCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGaa < 1:3300455/140‑1 (MQ=255) tcgcCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTTAGGATGGTAGCGTAAAGTATGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTGTGTCTTGTGAAATtcatc > 2:2603043/2‑140 (MQ=255) gcgcCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATtcatc > 2:1073101/1‑140 (MQ=255) tctcGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTGGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATCGATTTTTATGTCTTTGGAAATTCATCAATCag > 2:3495727‑M1/1‑138 (MQ=255) tctcGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCag > 1:4072774‑M1/1‑138 (MQ=255) ctcGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGGGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTTATTTTTATGTCTTTTGAAATTCATCAATCaga < 2:2981075‑M1/140‑4 (MQ=255) ttCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgc > 2:375154‑M1/1‑133 (MQ=255) tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACCGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 2:4448069‑M1/140‑9 (MQ=255) tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑ACC‑CAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 2:1436871‑M1/140‑9 (MQ=255) tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGACATTCATCAATCagattgcc < 2:306434‑M1/140‑9 (MQ=255) tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 2:420815‑M1/140‑9 (MQ=255) tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 1:273409‑M1/140‑9 (MQ=255) tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 1:1688417‑M1/140‑9 (MQ=255) tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 1:273120‑M1/140‑9 (MQ=255) tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 1:3886608‑M1/140‑9 (MQ=255) tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 2:420743‑M1/140‑9 (MQ=255) tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 1:3488619‑M1/140‑9 (MQ=255) tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 1:3732944‑M1/140‑9 (MQ=255) tctcTTTGTTTCCCCTCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTTGTTCACGATCTCGACAGATAATTTAT‑A‑ACCTTTTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 2:1204587‑M1/140‑9 (MQ=255) tttttttCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgt > 2:1315024‑M1/1‑128 (MQ=255) tttttttCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgt > 2:1315811‑M1/1‑128 (MQ=255) tttttttCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgt > 1:1180148‑M1/1‑128 (MQ=255) tttCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaa < 2:1016377‑M1/140‑17 (MQ=255) tttCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaa < 2:1016475‑M1/140‑17 (MQ=255) tCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaa < 1:441859‑M1/140‑19 (MQ=255) aTCACTTCTTTCCCCATTTTGTCGCCTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtga > 2:4661711‑M1/1‑118 (MQ=255) tCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgat < 1:2830690‑M1/140‑24 (MQ=255) tCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgat < 2:4046293‑M1/140‑24 (MQ=255) tCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgat < 2:4046337‑M1/140‑24 (MQ=255) tCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgat < 2:2820630‑M1/140‑24 (MQ=255) tCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgat < 1:2112725‑M1/140‑24 (MQ=255) aTTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGCTTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgctcgatatatttgaaa > 2:3312452‑M1/1‑103 (MQ=255) aTTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaa > 1:649955‑M1/1‑103 (MQ=255) aTTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATGTTTATGTCTTTTGAAATTCATCAATAagattcccttgttaaaaattgatcgatatatttgaaa > 1:4041084‑M1/1‑103 (MQ=255) tttGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatg > 1:2694878‑M1/1‑101 (MQ=255) ttGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatca > 2:4942961‑M1/1‑100 (MQ=255) gTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgtgaaaaagtgatcgatatatttgaaatcaag > 1:2453829‑M1/1‑98 (MQ=255) cgcgTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtt < 2:2187975‑M1/140‑45 (MQ=255) cgcgTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtt > 1:2351203‑M1/1‑96 (MQ=255) tCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgc > 2:96708‑M1/1‑92 (MQ=255) tCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgc > 1:4344292‑M1/1‑92 (MQ=255) aTGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatatt > 1:37497‑M1/1‑87 (MQ=255) tAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaa > 1:563441‑M1/1‑83 (MQ=255) tAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaa > 1:563890‑M1/1‑83 (MQ=255) aGCGCAAAGTGTGCCGTAGTTCACGATGTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtggtcgatatatttgaaatcaagtttcgcatattgaaat > 2:1094931‑M1/1‑82 (MQ=255) aGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgtcttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaat > 2:1567510‑M1/1‑82 (MQ=255) gcgcAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaatt > 2:3083021‑M1/1‑81 (MQ=255) gcgcAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaatt > 1:1642672‑M1/1‑81 (MQ=255) gcgcAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaatt > 1:2546050‑M1/1‑81 (MQ=255) gcgcAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaatt > 1:3192332‑M1/1‑81 (MQ=255) cgcAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattt > 1:1457406‑M1/1‑80 (MQ=255) cgcAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattt > 1:858152‑M1/1‑80 (MQ=255) cgcAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 2:2365037‑M1/88‑9 (MQ=255) cgcAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc > 1:2365037‑M1/1‑80 (MQ=255) ccaagtGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgctgtatttgaaatcaagtttcgcatattgaaatttta < 1:4537782‑M1/138‑63 (MQ=255) tgtgCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagcca > 2:431082‑M1/1‑73 (MQ=255) tgCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaa > 1:1003319‑M1/1‑71 (MQ=255) tgCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaa > 1:1003321‑M1/1‑71 (MQ=255) tgCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgaatattgaaattttaagccaaa > 1:1299919‑M1/1‑71 (MQ=255) ccGTAGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaa > 2:1924998‑M1/1‑69 (MQ=255) aGTTCACGATCTCGCCAGATAATTTAT‑A‑TCCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcg < 2:1190528‑M1/140‑76 (MQ=255) aGTTCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcg > 2:4861725‑M1/1‑65 (MQ=255) aGTGCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcg < 1:3508970‑M1/140‑76 (MQ=255) ttCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCGTCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgat > 2:96021‑M1/1‑63 (MQ=255) ttCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATTagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgat > 1:4864162‑M1/1‑63 (MQ=255) ttCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgat > 2:1215783‑M1/1‑63 (MQ=255) ttCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgat > 2:4599313‑M1/1‑63 (MQ=255) tCACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatc < 2:2546050‑M1/140‑79 (MQ=255) cACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatca > 2:1161162‑M1/1‑61 (MQ=255) cACGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTATGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccgaaaaagcgatca > 1:4438899‑M1/1‑61 (MQ=255) aagagctcgacagATAATTTATAA‑A‑CAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatctttgaaatcaagtttcgcatattgaaattttaagccaaaaaagctatcaa < 2:2396417‑M1/135‑81 (MQ=255) aCGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaa < 1:3808801‑M1/140‑81 (MQ=255) aCGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaa < 1:1294604‑M1/140‑81 (MQ=255) aCGATCTCGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGACTTTTGAAATTCATCAATCagattgcattgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaa < 2:2396716‑M1/140‑81 (MQ=255) tctcGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagcttgccttgttaaaaagtgatcgatatatttgaaatcaactttcgcatattgaaattgtatgccaaaaaaacgatcaaaaaa > 2:1044114‑M1/1‑56 (MQ=255) tctcGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaa > 2:1042103‑M1/1‑56 (MQ=255) tctcGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc > 1:1857655‑M1/1‑56 (MQ=255) cGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaaca > 2:1410831‑M1/1‑53 (MQ=255) cGACAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaaca > 1:4883645‑M1/1‑53 (MQ=255) aCAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaag < 1:2802346‑M1/140‑90 (MQ=255) aCAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaag < 1:723161‑M1/140‑90 (MQ=255) aCAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgagcaaaaaaacaag < 2:5131939‑M1/140‑90 (MQ=255) cAGATAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaagg < 2:352558‑M1/140‑91 (MQ=255) aTAATTTAT‑A‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatattttaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaaggaag > 2:5041577‑M1/1‑47 (MQ=255) aaTTTAT‑A‑ACCAATTGCTTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttacaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaaggaagac < 1:2887128‑M1/140‑96 (MQ=255) tat‑a‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaaggaagcctggg < 1:730072‑M1/140‑100 (MQ=255) | CTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑A‑A‑CAATTGATTTTTATGTCTTTTGAAATTCATCAATCCTGTTGACAATTAATCATCGGCATAGTATATCGGCATAGTATAATACGACAAGGTGAGGAACTAAACCCAGGAGGCAGATCATGAGTCTGAAAGAAAAA > NZ_CP025268/3743151‑3743423 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |