| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 3,864,439 | +C | pseudogene (1083/1613 nt) | CXP41_RS20140 ← | PTS sugar transporter subunit IIB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 3,864,437 | 1 | . | C | 98.3% | 969.2 / 6.7 | 297 | pseudogene (1085/1613 nt) | CXP41_RS20140 | PTS sugar transporter subunit IIB |
| Reads supporting (aligned to +/- strand): ref base . (2/3); new base C (136/153); total (138/159) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 320 total aligned reads displayed.
GCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACTTAGTCAATCAGACCTCCG‑CC‑ATGTTCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCG > NZ_CP025268/3864298‑3864571 | gAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCG‑ccc < 1:492869/140‑2 (MQ=255) aaTCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGT‑GGTAAAACCTAGTCAATCAGACCTCCG‑ccca < 2:3956852/140‑3 (MQ=255) tCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCTATGGCGATTTGCGCCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCG‑cccatg < 1:4307394/140‑5 (MQ=255) aGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGtt > 2:2913608/1‑140 (MQ=255) gtgtGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTCTTGC‑GGTAAACCCTAGTCAATCAGACCCCCG‑cccatttta > 2:2673535/1‑133 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcc > 1:3460216‑M1/1‑137 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcc < 1:5074650‑M1/140‑4 (MQ=255) tgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgccc > 1:4461016‑M1/1‑136 (MQ=255) gCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgccca < 1:2385655‑M1/140‑6 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccac < 1:636411‑M1/140‑7 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccac > 1:5119362‑M1/1‑134 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccac > 1:1198909‑M1/1‑134 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccac < 2:2750095‑M1/140‑7 (MQ=255) ggAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccacc < 2:2825798‑M1/140‑8 (MQ=255) gAAAACCACGAAGTACAGCAGGGTAAAGCACAACACAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccacca < 1:3280421‑M1/140‑9 (MQ=255) aaCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacac < 2:1795275‑M1/140‑12 (MQ=255) aaCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacac < 1:4404128‑M1/140‑12 (MQ=255) aCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacacc > 2:938810‑M1/1‑128 (MQ=255) cACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaa < 2:2431885‑M1/140‑15 (MQ=255) aCGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaa < 1:2769416‑M1/140‑16 (MQ=255) aCGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaa < 2:3055523‑M1/140‑16 (MQ=255) aCGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaa < 2:1713657‑M1/140‑16 (MQ=255) cGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaag < 1:2592865‑M1/140‑17 (MQ=255) aGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagaga < 1:4219562‑M1/140‑20 (MQ=255) cagcagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagataca < 1:2962133‑M1/140‑24 (MQ=255) cagcagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagataca < 1:316172‑M1/140‑24 (MQ=255) cagcagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagataca < 1:1668021‑M1/140‑24 (MQ=255) gcagGGTACAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacatt < 1:285166‑M1/140‑26 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacgg > 2:213040‑M1/1‑111 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacac < 2:675493‑M1/122‑12 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGAGCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacgg > 1:4118122‑M1/1‑111 (MQ=255) gTAAAGCACAGCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggt < 2:3686317‑M1/140‑31 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtc > 2:119457‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtc > 1:692683‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtc > 1:1744699‑M1/1‑109 (MQ=255) aGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgac > 1:3333632‑M1/1‑106 (MQ=255) caACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattg < 1:4082476‑M1/140‑39 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattga > 2:5148576‑M1/1‑101 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattga > 1:2288776‑M1/1‑101 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgag < 2:1645409‑M1/140‑41 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgag < 2:4514094‑M1/140‑41 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGA‑GGTAAAACCTAGTCAATCAGACCTCCGACC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgag < 2:533337‑M1/140‑41 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgagg > 2:2273585‑M1/1‑99 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgaca > 2:2624183‑M1/1‑99 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgaca < 1:2623651‑M1/134‑36 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcaacattgagg > 1:2710221‑M1/1‑99 (MQ=255) ccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggc < 1:142291‑M1/140‑43 (MQ=255) tGGCGATTTGTGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgcggccgcc > 2:3019069‑M1/1‑94 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgc > 2:3265311‑M1/1‑95 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgcc > 2:4413790‑M1/1‑94 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcc > 1:3862198‑M1/1‑94 (MQ=255) ggCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgcca < 2:4858414‑M1/140‑48 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:1148611‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:4793406‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:195257‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:2418977‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:3261063‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:4571435‑M1/140‑50 (MQ=255) gATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagca < 2:820394‑M1/140‑51 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 1:1781815‑M1/1‑89 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 1:2262395‑M1/1‑89 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 2:3633994‑M1/1‑89 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 1:4758816‑M1/1‑89 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggt < 2:223126‑M1/119‑31 (MQ=255) tcatATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GTTAAAACCTAGTCAATCACACCTCCG‑CCAATGTTgcccaccacaccaacgagttacattacggtcgacattgaggccgccagcacggcgtgtaccgca < 2:2553862‑M1/140‑65 (MQ=255) atatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaa < 2:1390114‑M1/140‑67 (MQ=255) tatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaac > 2:1451409‑M1/1‑73 (MQ=255) tatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaac > 1:100066‑M1/1‑73 (MQ=255) tatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaac > 2:1059922‑M1/1‑73 (MQ=255) cgcgTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagca < 1:334963‑M1/140‑72 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 1:3877896‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgca > 1:2336977‑M1/1‑68 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccccaccaaagagatacattccggtcgacattgaggccgccagcacggcgtgtaccgcaaaccgcacc > 1:1307011‑M1/1‑67 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaac > 2:4636137‑M1/1‑67 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaac > 2:2163679‑M1/1‑67 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaac > 2:3529966‑M1/1‑67 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacag > 1:1681254‑M1/1‑67 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacag < 2:1681254‑M1/136‑70 (MQ=255) gTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagatatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaaccgcaacg < 2:1116081‑M1/140‑75 (MQ=255) ggTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggt > 2:884761‑M1/1‑64 (MQ=255) gTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtg < 1:1626047‑M1/140‑78 (MQ=255) gTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtg < 1:4418391‑M1/140‑78 (MQ=255) tGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaa < 1:5054513‑M1/140‑80 (MQ=255) tCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg > 2:2006308‑M1/1‑52 (MQ=255) tCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg < 1:2650023‑M1/140‑89 (MQ=255) tCGGGATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg < 1:3984962‑M1/140‑89 (MQ=255) ggATCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaag > 1:4650276‑M1/1‑49 (MQ=255) tCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggta > 1:1517683‑M1/1‑46 (MQ=255) tCCAGTTTTGC‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggta > 1:207456‑M1/1‑46 (MQ=255) cAGTTTTGC‑GGTAAAACCTAGTCAATCCGACCTCCGCCC‑ATGTTgcccaccacaccacagagatacattacggtcgacattgaggccgccagcacggcgggtaccgcaaacagcaacggtgaaatgaacaggaaggtaaa > 2:4954856‑M1/1‑44 (MQ=255) c‑GGTAAAACCTAGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcg > 2:612517‑M1/1‑36 (MQ=255) aGTCAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaatt > 2:4239654‑M1/1‑25 (MQ=255) tCAATCAGACCTCCGCCC‑ATGTTgcccgccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtactgcaaacagcaacggtgaaatgaacagg > 2:3819815‑M1/1‑23 (MQ=255) cAATCAGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattccc < 2:4024702‑M1/140‑119 (MQ=255) tCAGACCTCCGCCC‑ATGTTgcccaccacaacaaagggatacattacggtcgacattggggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccacc > 2:3365859‑M1/1‑19 (MQ=255) aGACCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagtaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccag > 2:2292129‑M1/1‑17 (MQ=255) aCCTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagca < 1:3800468‑M1/140‑126 (MQ=255) cTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcatg < 2:4327833‑M1/140‑128 (MQ=255) cTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcatg < 1:921157‑M1/140‑128 (MQ=255) cTCCGCCC‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcatg < 2:1225841‑M1/140‑128 (MQ=255) | GCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGC‑GGTAAAACTTAGTCAATCAGACCTCCG‑CC‑ATGTTCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCG > NZ_CP025268/3864298‑3864571 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |